Wall clock time and date at job start Tue Mar 31 2020 13:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99788 * 2 1 4 4 H 1.08996 * 109.44008 * 29.91180 * 3 2 1 5 5 C 1.53071 * 109.43420 * 269.99355 * 3 2 1 6 6 C 1.53412 * 108.28079 * 191.66706 * 5 3 2 7 7 O 1.42823 * 108.36782 * 64.68603 * 6 5 3 8 8 C 1.35921 * 117.87843 * 310.98524 * 7 6 5 9 9 C 1.39720 * 118.48811 * 196.71848 * 8 7 6 10 10 N 1.40171 * 119.94763 * 0.19986 * 9 8 7 11 11 C 1.34775 * 119.99563 * 204.60491 * 10 9 8 12 12 O 1.21590 * 120.00434 * 5.63538 * 11 10 9 13 13 N 1.34780 * 119.99720 * 185.63113 * 11 10 9 14 14 C 1.46500 * 119.99741 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47362 * 35.00538 * 14 13 11 16 16 C 1.52994 * 109.47350 * 275.00104 * 14 13 11 17 17 C 1.50705 * 109.47066 * 154.99998 * 14 13 11 18 18 H 1.08000 * 119.99733 * 0.02562 * 17 14 13 19 19 C 1.37874 * 120.00121 * 179.97438 * 17 14 13 20 20 N 1.31514 * 119.99963 * 0.02562 * 19 17 14 21 21 Si 1.86797 * 119.99938 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.47000 * 90.00287 * 21 19 17 23 23 H 1.48500 * 109.47483 * 210.00335 * 21 19 17 24 24 H 1.48506 * 109.47657 * 330.00456 * 21 19 17 25 25 C 1.38514 * 120.09994 * 179.97438 * 9 8 7 26 26 C 1.38248 * 119.87341 * 0.40772 * 25 9 8 27 27 C 1.38079 * 120.03987 * 359.73025 * 26 25 9 28 28 C 1.38158 * 121.85049 * 17.00396 * 8 7 6 29 29 H 1.09004 * 109.46989 * 60.00109 * 1 2 3 30 30 H 1.09004 * 109.47142 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47016 * 300.00603 * 1 2 3 32 32 H 1.09007 * 109.69994 * 71.97595 * 5 3 2 33 33 H 1.08993 * 109.73919 * 311.38866 * 5 3 2 34 34 H 1.09007 * 109.68370 * 304.96833 * 6 5 3 35 35 H 1.08997 * 109.71646 * 184.42897 * 6 5 3 36 36 H 0.97002 * 120.00186 * 24.61457 * 10 9 8 37 37 H 0.96999 * 120.00202 * 0.02562 * 13 11 10 38 38 H 1.09002 * 109.47450 * 180.02562 * 16 14 13 39 39 H 1.09009 * 109.46998 * 299.99884 * 16 14 13 40 40 H 1.09001 * 109.47448 * 59.99908 * 16 14 13 41 41 H 0.97004 * 119.99564 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.06116 * 180.23728 * 25 9 8 43 43 H 1.07997 * 119.97934 * 179.74688 * 26 25 9 44 44 H 1.08006 * 119.77271 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3438 1.9992 0.5125 5 6 2.2175 1.7707 -1.4435 6 6 3.0989 3.0262 -1.4226 7 8 4.3860 2.6642 -0.9206 8 6 4.4394 1.9385 0.2275 9 6 5.6508 1.8763 0.9209 10 7 6.7736 2.5570 0.4303 11 6 8.0119 2.1396 0.7601 12 8 8.1584 1.1146 1.3976 13 7 9.0880 2.8584 0.3833 14 6 10.4340 2.4044 0.7414 15 1 10.4682 1.3152 0.7187 16 6 10.7809 2.8964 2.1479 17 6 11.4300 2.9587 -0.2446 18 1 11.0939 3.5867 -1.0564 19 6 12.7703 2.6650 -0.1096 20 7 13.1796 1.9006 0.8793 21 14 14.0046 3.3514 -1.3321 22 1 14.4990 4.6665 -0.8508 23 1 15.1465 2.4113 -1.4635 24 1 13.3496 3.5225 -2.6539 25 6 5.7426 1.1469 2.0948 26 6 4.6352 0.4730 2.5752 27 6 3.4386 0.5320 1.8886 28 6 3.3368 1.2639 0.7155 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.2539 2.0057 -1.8958 33 1 2.7104 0.9852 -2.0162 34 1 2.6503 3.7789 -0.7742 35 1 3.1971 3.4234 -2.4329 36 1 6.6594 3.3285 -0.1465 37 1 8.9712 3.6763 -0.1249 38 1 11.7826 2.5590 2.4141 39 1 10.7469 3.9857 2.1705 40 1 10.0606 2.4955 2.8610 41 1 14.1226 1.6937 0.9740 42 1 6.6782 1.1023 2.6323 43 1 4.7059 -0.0996 3.4881 44 1 2.5762 0.0035 2.2676 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448051507.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:48 Heat of formation + Delta-G solvation = -102.266477 kcal Electronic energy + Delta-G solvation = -26974.366484 eV Core-core repulsion = 23084.441673 eV Total energy + Delta-G solvation = -3889.924811 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.13502 -40.99144 -38.85004 -38.49744 -36.86881 -35.73463 -34.38518 -33.48708 -31.62063 -31.17856 -29.53842 -27.78411 -27.33088 -25.82509 -24.83604 -24.15931 -22.54901 -21.79825 -21.06946 -19.73088 -19.07560 -18.60222 -17.84144 -17.66885 -17.10236 -16.95862 -16.48592 -16.30020 -16.04653 -15.83377 -15.56446 -15.48323 -15.12892 -14.61785 -14.38987 -14.26348 -13.91314 -13.76771 -13.57724 -13.20595 -13.02132 -12.89176 -12.85852 -12.69104 -12.64290 -12.27963 -12.12866 -11.89422 -11.84286 -11.70551 -11.49057 -11.10054 -10.99184 -10.61191 -10.57769 -9.85480 -9.39404 -8.72912 -8.17210 -6.34474 0.26204 0.37441 1.45284 1.46638 1.56731 1.71421 2.14181 2.26910 2.42604 2.63860 3.00734 3.13247 3.41051 3.58480 3.68889 3.80293 4.04114 4.14269 4.26952 4.37995 4.41420 4.48198 4.57236 4.60749 4.65828 4.68538 4.76270 4.91542 4.93562 4.96397 5.04781 5.09049 5.10833 5.33475 5.39243 5.53055 5.56402 5.62448 5.66670 5.84653 5.86981 6.09567 6.22447 6.25748 6.43474 6.72811 7.20681 7.33905 7.65501 8.89430 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025969 B = 0.002683 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.968926 B =10434.797492 C =11152.062644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.398 6.398 3 C 0.141 3.859 4 H 0.097 0.903 5 C -0.177 4.177 6 C 0.059 3.941 7 O -0.330 6.330 8 C 0.106 3.894 9 C 0.125 3.875 10 N -0.668 5.668 11 C 0.693 3.307 12 O -0.621 6.621 13 N -0.714 5.714 14 C 0.289 3.711 15 H -0.001 1.001 16 C -0.134 4.134 17 C -0.547 4.547 18 H 0.073 0.927 19 C 0.014 3.986 20 N -0.917 5.917 21 Si 0.975 3.025 22 H -0.270 1.270 23 H -0.286 1.286 24 H -0.265 1.265 25 C -0.121 4.121 26 C -0.134 4.134 27 C -0.086 4.086 28 C -0.156 4.156 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.116 0.884 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.134 0.866 36 H 0.419 0.581 37 H 0.403 0.597 38 H 0.069 0.931 39 H 0.040 0.960 40 H 0.012 0.988 41 H 0.266 0.734 42 H 0.127 0.873 43 H 0.144 0.856 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.406 3.918 -3.330 28.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.317 6.317 3 C 0.083 3.917 4 H 0.115 0.885 5 C -0.215 4.215 6 C -0.016 4.016 7 O -0.245 6.245 8 C 0.058 3.942 9 C 0.029 3.971 10 N -0.315 5.315 11 C 0.393 3.607 12 O -0.502 6.502 13 N -0.366 5.366 14 C 0.185 3.815 15 H 0.017 0.983 16 C -0.193 4.193 17 C -0.585 4.585 18 H 0.091 0.909 19 C -0.186 4.186 20 N -0.555 5.555 21 Si 0.800 3.200 22 H -0.195 1.195 23 H -0.212 1.212 24 H -0.189 1.189 25 C -0.142 4.142 26 C -0.152 4.152 27 C -0.105 4.105 28 C -0.157 4.157 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.134 0.866 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.152 0.848 36 H 0.256 0.744 37 H 0.238 0.762 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.031 0.969 41 H 0.075 0.925 42 H 0.145 0.855 43 H 0.162 0.838 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -27.740 2.876 -2.827 28.031 hybrid contribution 0.715 0.742 -0.731 1.264 sum -27.025 3.618 -3.558 27.497 Atomic orbital electron populations 1.23045 0.79082 1.03981 1.01316 1.87993 1.21667 1.26996 1.95079 1.20742 0.90510 0.85790 0.94630 0.88514 1.22721 1.03002 0.98689 0.97083 1.23294 0.80384 0.96016 1.01865 1.85938 1.33550 1.68391 1.36618 1.18211 0.92619 0.96447 0.86909 1.17285 0.85323 1.00473 0.94001 1.42313 1.02290 1.33714 1.53220 1.16219 0.80952 0.83215 0.80266 1.90809 1.85575 1.26927 1.46932 1.45477 1.05392 1.27395 1.58338 1.18278 0.76654 0.93586 0.92980 0.98263 1.21919 1.01202 0.99002 0.97128 1.21523 0.92141 1.32504 1.12345 0.90870 1.25807 1.00273 0.95034 0.97498 1.70057 1.16381 1.37170 1.31889 0.85302 0.77756 0.78062 0.78930 1.19504 1.21205 1.18944 1.21340 1.00292 0.98174 0.94409 1.21159 0.91937 1.00590 1.01557 1.21016 0.98148 0.97614 0.93725 1.19753 0.95055 1.02355 0.98568 0.92532 0.88753 0.92600 0.86611 0.91466 0.89883 0.84798 0.74388 0.76235 0.91276 0.94097 0.96852 0.92488 0.85549 0.83819 0.83556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.82 113.37 1.23 1.43 16 2 O -0.40 -7.26 9.64 -148.98 -1.44 -8.69 16 3 C 0.14 2.37 2.73 29.90 0.08 2.45 16 4 H 0.10 1.15 7.78 -2.39 -0.02 1.13 16 5 C -0.18 -2.44 5.81 30.76 0.18 -2.27 16 6 C 0.06 0.81 7.03 72.12 0.51 1.32 16 7 O -0.33 -7.94 9.58 -92.66 -0.89 -8.83 16 8 C 0.11 2.99 6.49 22.61 0.15 3.14 16 9 C 0.13 4.28 6.45 38.23 0.25 4.53 16 10 N -0.67 -23.33 5.27 -316.61 -1.67 -25.00 16 11 C 0.69 30.49 8.33 179.05 1.49 31.98 16 12 O -0.62 -32.39 13.17 -4.00 -0.05 -32.45 16 13 N -0.71 -31.30 5.07 -461.40 -2.34 -33.64 16 14 C 0.29 15.42 2.56 44.24 0.11 15.53 16 15 H 0.00 -0.03 7.58 -2.39 -0.02 -0.05 16 16 C -0.13 -6.93 9.26 71.98 0.67 -6.27 16 17 C -0.55 -29.45 8.73 25.60 0.22 -29.22 16 18 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16 19 C 0.01 0.76 5.30 84.65 0.45 1.21 16 20 N -0.92 -53.18 11.32 21.45 0.24 -52.93 16 21 Si 0.98 42.45 29.54 68.60 2.03 44.47 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 23 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 25 C -0.12 -4.29 8.71 22.34 0.19 -4.10 16 26 C -0.13 -3.75 10.04 22.23 0.22 -3.53 16 27 C -0.09 -2.09 9.30 22.33 0.21 -1.88 16 28 C -0.16 -3.79 5.58 -19.76 -0.11 -3.90 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.06 0.40 8.08 -2.39 -0.02 0.38 16 32 H 0.12 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.42 11.95 8.27 -92.71 -0.77 11.18 16 37 H 0.40 14.81 8.56 -92.71 -0.79 14.01 16 38 H 0.07 3.89 6.07 -2.39 -0.01 3.88 16 39 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.01 0.64 8.14 -2.39 -0.02 0.63 16 41 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 42 H 0.13 5.27 5.78 -2.91 -0.02 5.25 16 43 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 44 H 0.15 2.83 7.75 -2.91 -0.02 2.81 16 Total: -1.00 -73.44 361.16 1.21 -72.23 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: -0.52 Total: 34.41 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 5.85 Total: 10.42 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -3.77 Total: -111.58 kcal Atomic # 8 Polarization: -47.59 SS G_CDS: -2.38 Total: -49.97 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -73.44 1.21 -72.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448051507.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.034 kcal (2) G-P(sol) polarization free energy of solvation -73.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds