Wall clock time and date at job start Tue Mar 31 2020 13:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.55542 * 2 1 4 4 C 1.53304 * 109.51302 * 239.87534 * 2 1 3 5 5 N 1.47146 * 108.38587 * 187.77346 * 4 2 1 6 6 C 1.34775 * 120.98409 * 230.55456 * 5 4 2 7 7 O 1.21587 * 119.99945 * 174.60511 * 6 5 4 8 8 N 1.34774 * 119.99927 * 354.60006 * 6 5 4 9 9 C 1.39954 * 119.99986 * 187.21099 * 8 6 5 10 10 C 1.39282 * 119.94581 * 33.46086 * 9 8 6 11 11 C 1.38495 * 120.42671 * 179.97438 * 10 9 8 12 12 C 1.37679 * 120.32505 * 0.02562 * 11 10 9 13 13 C 1.40740 * 119.87978 * 359.97438 * 12 11 10 14 14 C 1.41410 * 120.20834 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99959 * 30.25533 * 14 13 12 16 16 C 1.39932 * 119.99805 * 210.25680 * 14 13 12 17 17 N 1.30829 * 120.00352 * 11.16208 * 16 14 13 18 18 Si 1.86805 * 119.99637 * 191.15562 * 16 14 13 19 19 H 1.48493 * 109.47381 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46811 * 120.00168 * 18 16 14 21 21 H 1.48502 * 109.46850 * 239.99765 * 18 16 14 22 22 C 1.38238 * 119.94608 * 213.18205 * 9 8 6 23 23 C 1.47161 * 118.03697 * 50.53244 * 5 4 2 24 24 C 1.53296 * 108.38152 * 309.47021 * 23 5 4 25 25 H 1.09001 * 109.50745 * 292.36838 * 24 23 5 26 26 C 1.53000 * 109.51025 * 172.27883 * 24 23 5 27 27 O 1.42897 * 109.47232 * 174.99766 * 26 24 23 28 28 O 1.42951 * 109.22810 * 52.29962 * 24 23 5 29 29 H 1.08991 * 109.47330 * 180.12532 * 1 2 3 30 30 H 1.09001 * 109.47105 * 300.13256 * 1 2 3 31 31 H 1.09007 * 109.46969 * 60.12776 * 1 2 3 32 32 H 1.09003 * 109.68335 * 68.04931 * 4 2 1 33 33 H 1.09001 * 109.67605 * 307.49973 * 4 2 1 34 34 H 0.97004 * 119.99793 * 7.21974 * 8 6 5 35 35 H 1.08000 * 119.78925 * 359.97061 * 10 9 8 36 36 H 1.08000 * 119.83414 * 180.02562 * 11 10 9 37 37 H 1.07997 * 120.06024 * 180.02562 * 12 11 10 38 38 H 0.96997 * 119.99956 * 180.02562 * 17 16 14 39 39 H 1.07995 * 120.16267 * 0.02562 * 22 9 8 40 40 H 1.09007 * 109.67590 * 69.18649 * 23 5 4 41 41 H 1.08992 * 109.68343 * 189.73928 * 23 5 4 42 42 H 1.09000 * 109.46911 * 294.99137 * 26 24 23 43 43 H 1.08994 * 109.47417 * 54.99116 * 26 24 23 44 44 H 0.96699 * 114.00276 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0420 -0.7252 -1.2498 5 7 3.5011 -0.8762 -1.1337 6 6 4.3193 -0.5034 -2.1377 7 8 5.5250 -0.5440 -1.9863 8 7 3.8010 -0.0857 -3.3096 9 6 4.6434 0.1570 -4.4005 10 6 5.7892 -0.6145 -4.5792 11 6 6.6296 -0.3832 -5.6555 12 6 6.3414 0.6130 -6.5610 13 6 5.1871 1.4006 -6.3932 14 6 4.8841 2.4253 -7.3194 15 1 5.1875 2.3276 -8.3513 16 6 4.1913 3.5661 -6.8987 17 7 4.0151 3.7908 -5.6220 18 14 3.5183 4.7681 -8.1603 19 1 3.8485 4.2886 -9.5264 20 1 2.0437 4.8658 -8.0135 21 1 4.1269 6.1053 -7.9439 22 6 4.3339 1.1582 -5.3021 23 6 4.0407 -1.4458 0.1113 24 6 3.4312 -0.6855 1.2947 25 1 3.8030 0.3391 1.2994 26 6 3.8223 -1.3770 2.6023 27 8 3.3527 -0.6042 3.7088 28 8 2.0075 -0.6764 1.1654 29 1 -0.3633 -1.0276 0.0022 30 1 -0.3633 0.5159 0.8888 31 1 -0.3633 0.5119 -0.8912 32 1 1.8030 -0.1399 -2.1377 33 1 1.5757 -1.7079 -1.3209 34 1 2.8440 0.0468 -3.3969 35 1 6.0240 -1.3980 -3.8740 36 1 7.5153 -0.9875 -5.7851 37 1 6.9995 0.7894 -7.3990 38 1 3.5346 4.5813 -5.3305 39 1 3.4436 1.7541 -5.1666 40 1 3.7756 -2.5011 0.1772 41 1 5.1251 -1.3377 0.1247 42 1 3.3740 -2.3699 2.6364 43 1 4.9072 -1.4662 2.6558 44 1 3.5659 -0.9836 4.5723 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455911250.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:34 Heat of formation + Delta-G solvation = -89.664543 kcal Electronic energy + Delta-G solvation = -27142.027123 eV Core-core repulsion = 23252.648773 eV Total energy + Delta-G solvation = -3889.378350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.63529 -39.03233 -37.30278 -36.86828 -34.65585 -34.42746 -33.41663 -33.02531 -30.03295 -29.50559 -28.31633 -26.76610 -25.45562 -25.17974 -22.19894 -21.75095 -21.19726 -20.73461 -19.35433 -18.15779 -17.67209 -17.41545 -17.04111 -16.05626 -15.76833 -15.42764 -15.21637 -14.82247 -14.64422 -14.48749 -14.22148 -14.16254 -13.54493 -13.02002 -12.99849 -12.76071 -12.73596 -12.49003 -12.35376 -12.16115 -11.78035 -11.67288 -11.25188 -11.24413 -11.06851 -10.87310 -10.70710 -10.46224 -10.38483 -10.16112 -9.99630 -9.89882 -9.54235 -9.31554 -8.95865 -8.55008 -7.31801 -6.92017 -6.66146 -4.37261 2.59223 2.76680 2.89468 3.08681 3.14156 3.21700 3.35006 3.61231 3.88504 3.96371 4.12833 4.52734 4.67152 4.69152 4.80785 4.85603 4.96474 4.98604 5.12618 5.19109 5.27542 5.39091 5.45982 5.64709 5.65752 5.68385 5.78863 5.93880 6.20058 6.33723 6.64444 6.69547 6.75756 6.96260 6.99006 7.08188 7.19828 7.32405 7.34725 7.63879 7.79743 7.95095 8.04467 8.24693 8.37752 8.61139 8.89985 8.91562 9.00485 10.27102 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016303 B = 0.003197 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.017285 B = 8754.845361 C = 9827.079280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.074 3.926 3 H 0.065 0.935 4 C 0.082 3.918 5 N -0.636 5.636 6 C 0.707 3.293 7 O -0.568 6.568 8 N -0.676 5.676 9 C 0.160 3.840 10 C -0.221 4.221 11 C -0.088 4.088 12 C -0.224 4.224 13 C 0.122 3.878 14 C -0.467 4.467 15 H 0.078 0.922 16 C 0.074 3.926 17 N -0.805 5.805 18 Si 0.908 3.092 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.276 1.276 22 C -0.177 4.177 23 C 0.106 3.894 24 C 0.078 3.922 25 H 0.071 0.929 26 C 0.088 3.912 27 O -0.565 6.565 28 O -0.366 6.366 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.395 0.605 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.277 0.723 39 H 0.120 0.880 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.435 -8.453 13.717 17.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.015 3.985 3 H 0.083 0.917 4 C -0.042 4.042 5 N -0.376 5.376 6 C 0.410 3.590 7 O -0.444 6.444 8 N -0.323 5.323 9 C 0.068 3.932 10 C -0.243 4.243 11 C -0.107 4.107 12 C -0.244 4.244 13 C 0.119 3.881 14 C -0.497 4.497 15 H 0.096 0.904 16 C -0.142 4.142 17 N -0.432 5.432 18 Si 0.733 3.267 19 H -0.185 1.185 20 H -0.199 1.199 21 H -0.201 1.201 22 C -0.199 4.199 23 C -0.018 4.018 24 C 0.019 3.981 25 H 0.089 0.911 26 C 0.009 3.991 27 O -0.370 6.370 28 O -0.285 6.285 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.231 0.769 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.138 0.862 40 H 0.091 0.909 41 H 0.124 0.876 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -6.984 -8.034 13.625 17.291 hybrid contribution -0.430 0.545 -0.227 0.731 sum -7.414 -7.489 13.398 17.045 Atomic orbital electron populations 1.21725 0.92041 1.03182 1.03045 1.22480 0.95576 0.95626 0.84803 0.91694 1.22398 0.80909 1.01733 0.99189 1.47241 1.05772 1.68056 1.16523 1.15784 0.85022 0.78232 0.80005 1.90924 1.12280 1.60100 1.81119 1.42739 1.10144 1.69663 1.09782 1.17434 0.92441 0.96312 0.87046 1.20326 0.98627 1.04202 1.01096 1.20425 0.97675 0.97711 0.94886 1.21094 0.99234 1.02142 1.01905 1.17356 0.88868 0.90591 0.91241 1.19528 1.32189 1.01293 0.96721 0.90402 1.25856 0.93994 0.98663 0.95656 1.69818 1.32366 1.25794 1.15218 0.86261 0.78987 0.79832 0.81585 1.18528 1.19928 1.20104 1.20999 1.02633 0.97323 0.98907 1.21940 1.01017 0.96822 0.81997 1.22480 0.82262 1.00165 0.93226 0.91097 1.22056 0.97801 0.94048 0.85150 1.86540 1.81944 1.52031 1.16513 1.87977 1.20143 1.77296 1.43122 0.91558 0.91343 0.90569 0.89324 0.90430 0.76877 0.88055 0.88991 0.88775 0.91230 0.86222 0.90892 0.87606 0.92501 0.91647 0.77371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.57 37.16 0.36 -0.86 16 2 C 0.07 0.83 3.40 -26.58 -0.09 0.74 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 4 C 0.08 0.94 5.87 -3.53 -0.02 0.92 16 5 N -0.64 -9.37 3.02 -178.00 -0.54 -9.91 16 6 C 0.71 13.66 8.01 -86.92 -0.70 12.96 16 7 O -0.57 -13.05 13.58 5.29 0.07 -12.98 16 8 N -0.68 -13.26 5.25 -14.27 -0.07 -13.33 16 9 C 0.16 3.80 6.25 -83.76 -0.52 3.28 16 10 C -0.22 -5.34 8.66 -39.10 -0.34 -5.68 16 11 C -0.09 -2.08 10.02 -39.69 -0.40 -2.48 16 12 C -0.22 -5.59 9.79 -38.84 -0.38 -5.97 16 13 C 0.12 3.27 5.52 -106.85 -0.59 2.68 16 14 C -0.47 -12.34 9.05 -37.74 -0.34 -12.68 16 15 H 0.08 1.98 7.87 -52.48 -0.41 1.57 16 16 C 0.07 1.86 5.23 -17.34 -0.09 1.77 16 17 N -0.81 -20.90 10.99 55.55 0.61 -20.29 16 18 Si 0.91 18.69 29.57 -169.99 -5.03 13.66 16 19 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 22 C -0.18 -4.52 8.55 -38.68 -0.33 -4.85 16 23 C 0.11 1.33 5.94 -3.53 -0.02 1.31 16 24 C 0.08 0.92 3.06 -26.58 -0.08 0.84 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 C 0.09 0.79 6.71 37.16 0.25 1.04 16 27 O -0.57 -5.57 13.63 -39.66 -0.54 -6.12 16 28 O -0.37 -4.59 10.00 -39.66 -0.40 -4.98 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.96 5.77 -51.93 -0.30 0.66 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.40 6.47 6.37 -40.82 -0.26 6.21 16 35 H 0.10 2.43 6.47 -52.49 -0.34 2.09 16 36 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 37 H 0.09 2.20 8.06 -52.49 -0.42 1.77 16 38 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 39 H 0.12 3.10 6.37 -52.49 -0.33 2.76 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.11 1.43 7.06 -51.93 -0.37 1.07 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.38 1.77 9.12 45.56 0.42 2.19 16 LS Contribution 359.71 15.07 5.42 5.42 Total: -1.00 -33.49 359.71 -9.15 -42.64 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -5.38 Total: 12.88 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -3.30 Total: -7.00 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.00 Total: -43.53 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.87 Total: -24.08 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.49 -9.15 -42.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455911250.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.022 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds