Wall clock time and date at job start Tue Mar 31 2020 13:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.51515 * 2 1 4 4 C 1.53296 * 109.51234 * 239.89702 * 2 1 3 5 5 N 1.47153 * 108.38401 * 292.32924 * 4 2 1 6 6 C 1.34778 * 120.98154 * 129.44999 * 5 4 2 7 7 O 1.21591 * 119.99591 * 175.26320 * 6 5 4 8 8 N 1.34773 * 120.00140 * 355.25313 * 6 5 4 9 9 C 1.39952 * 120.00282 * 184.69087 * 8 6 5 10 10 C 1.39291 * 119.94441 * 323.86860 * 9 8 6 11 11 C 1.38486 * 120.43028 * 179.71869 * 10 9 8 12 12 C 1.37687 * 120.31674 * 0.55858 * 11 10 9 13 13 C 1.40737 * 119.88677 * 359.72148 * 12 11 10 14 14 C 1.41406 * 120.21117 * 179.97438 * 13 12 11 15 15 H 1.07991 * 120.00289 * 28.98523 * 14 13 12 16 16 C 1.39934 * 119.99910 * 208.98020 * 14 13 12 17 17 N 1.30831 * 120.00215 * 10.29240 * 16 14 13 18 18 Si 1.86801 * 120.00121 * 190.29014 * 16 14 13 19 19 H 1.48502 * 109.47057 * 60.00214 * 18 16 14 20 20 H 1.48500 * 109.47113 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47263 * 300.00307 * 18 16 14 22 22 C 1.38228 * 119.94763 * 144.14451 * 9 8 6 23 23 C 1.47158 * 118.03614 * 309.46210 * 5 4 2 24 24 C 1.53293 * 108.38098 * 50.53900 * 23 5 4 25 25 H 1.09002 * 109.51418 * 67.62031 * 24 23 5 26 26 C 1.53001 * 109.51044 * 187.77501 * 24 23 5 27 27 O 1.42905 * 109.47317 * 185.00203 * 26 24 23 28 28 O 1.42960 * 109.55136 * 120.12787 * 2 1 3 29 29 H 1.09006 * 109.46896 * 180.10005 * 1 2 3 30 30 H 1.08999 * 109.47200 * 300.10499 * 1 2 3 31 31 H 1.09003 * 109.46992 * 60.10803 * 1 2 3 32 32 H 1.08999 * 109.67752 * 172.60854 * 4 2 1 33 33 H 1.08992 * 109.71258 * 52.07018 * 4 2 1 34 34 H 0.97005 * 119.99771 * 4.69209 * 8 6 5 35 35 H 1.08004 * 119.78757 * 359.97438 * 10 9 8 36 36 H 1.07997 * 119.84593 * 180.25946 * 11 10 9 37 37 H 1.07996 * 120.05828 * 179.74255 * 12 11 10 38 38 H 0.96996 * 120.00221 * 179.97438 * 17 16 14 39 39 H 1.07998 * 120.16339 * 359.97438 * 22 9 8 40 40 H 1.08998 * 109.68292 * 170.26136 * 23 5 4 41 41 H 1.09003 * 109.68189 * 290.81972 * 23 5 4 42 42 H 1.09003 * 109.47334 * 304.99513 * 26 24 23 43 43 H 1.08995 * 109.47389 * 64.99689 * 26 24 23 44 44 H 0.96696 * 114.00369 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0420 -0.7247 -1.2500 5 7 1.6970 -2.1505 -1.1339 6 6 1.0720 -2.7970 -2.1378 7 8 0.8723 -3.9938 -2.0589 8 7 0.6682 -2.1170 -3.2291 9 6 -0.0668 -2.7675 -4.2268 10 6 0.2146 -4.0942 -4.5444 11 6 -0.5103 -4.7494 -5.5258 12 6 -1.5103 -4.0921 -6.2068 13 6 -1.8019 -2.7497 -5.9007 14 6 -2.8271 -2.0679 -6.5962 15 1 -3.6688 -2.6169 -6.9916 16 6 -2.7511 -0.6817 -6.7718 17 7 -1.6476 -0.0443 -6.4757 18 14 -4.2251 0.2587 -7.4293 19 1 -5.3782 0.0762 -6.5114 20 1 -3.8902 1.7025 -7.5214 21 1 -4.5791 -0.2549 -8.7769 22 6 -1.0669 -2.0906 -4.8993 23 6 2.0542 -2.8495 0.1108 24 6 1.5416 -2.0212 1.2945 25 1 0.4516 -2.0293 1.2996 26 6 2.0643 -2.6202 2.6017 27 8 1.4932 -1.9196 3.7087 28 8 2.0084 -0.6762 1.1652 29 1 -0.3633 -1.0277 0.0018 30 1 -0.3633 0.5155 0.8890 31 1 -0.3633 0.5122 -0.8910 32 1 3.1240 -0.6135 -1.3214 33 1 1.5704 -0.3040 -2.1380 34 1 0.8870 -1.1767 -3.3231 35 1 1.0004 -4.6166 -4.0190 36 1 -0.2869 -5.7794 -5.7616 37 1 -2.0701 -4.6058 -6.9742 38 1 -1.5948 0.9165 -6.5979 39 1 -1.2831 -1.0607 -4.6566 40 1 1.5900 -3.8356 0.1243 41 1 3.1374 -2.9520 0.1763 42 1 1.7867 -3.6728 2.6558 43 1 3.1499 -2.5286 2.6348 44 1 1.7813 -2.2464 4.5719 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455911253.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:40 Heat of formation + Delta-G solvation = -108.067243 kcal Electronic energy + Delta-G solvation = -27469.271846 eV Core-core repulsion = 23579.095495 eV Total energy + Delta-G solvation = -3890.176351 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.01596 -40.39083 -38.99559 -37.62605 -36.08245 -35.88803 -35.02420 -33.74828 -31.45499 -31.06913 -29.96268 -27.84124 -27.17023 -26.54706 -23.78370 -23.15097 -22.88508 -21.58348 -20.46670 -19.60327 -19.21081 -18.41022 -17.87532 -17.48833 -17.16960 -16.77712 -16.50475 -16.43191 -15.91711 -15.80830 -15.43175 -15.20250 -14.97420 -14.61566 -14.47373 -14.28580 -14.14400 -13.54434 -13.51282 -13.21403 -13.03355 -12.95624 -12.79892 -12.62678 -12.44977 -12.35164 -12.20396 -11.85764 -11.61141 -11.57871 -11.28261 -11.21067 -11.00822 -10.90761 -10.74977 -9.67988 -9.26859 -8.81708 -8.48785 -6.35503 0.88890 1.06970 1.40365 1.41359 1.51450 1.54672 2.05919 2.24364 2.59790 2.77253 2.82160 3.17241 3.61366 3.71724 3.84522 3.89245 3.95679 4.16206 4.23591 4.26891 4.35295 4.46235 4.48319 4.55155 4.62109 4.76410 4.78534 4.83056 4.85497 4.92619 5.09797 5.14203 5.16751 5.18122 5.29663 5.39887 5.66724 5.80699 5.95765 6.08699 6.09760 6.11898 6.38179 6.67230 6.84643 6.92134 6.96627 7.00880 7.45096 8.40168 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016881 B = 0.003354 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.308296 B = 8346.843920 C = 9423.115753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.078 3.922 3 H 0.144 0.856 4 C 0.075 3.925 5 N -0.625 5.625 6 C 0.704 3.296 7 O -0.610 6.610 8 N -0.671 5.671 9 C 0.163 3.837 10 C -0.233 4.233 11 C -0.088 4.088 12 C -0.244 4.244 13 C 0.092 3.908 14 C -0.499 4.499 15 H 0.074 0.926 16 C 0.036 3.964 17 N -0.829 5.829 18 Si 0.982 3.018 19 H -0.264 1.264 20 H -0.266 1.266 21 H -0.263 1.263 22 C -0.193 4.193 23 C 0.106 3.894 24 C 0.075 3.925 25 H 0.053 0.947 26 C 0.090 3.910 27 O -0.588 6.588 28 O -0.370 6.370 29 H 0.036 0.964 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.409 0.591 35 H 0.106 0.894 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.287 0.713 39 H 0.115 0.885 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.153 3.501 15.617 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.020 3.980 3 H 0.161 0.839 4 C -0.047 4.047 5 N -0.363 5.363 6 C 0.407 3.593 7 O -0.490 6.490 8 N -0.320 5.320 9 C 0.069 3.931 10 C -0.255 4.255 11 C -0.107 4.107 12 C -0.264 4.264 13 C 0.089 3.911 14 C -0.529 4.529 15 H 0.093 0.907 16 C -0.178 4.178 17 N -0.456 5.456 18 Si 0.803 3.197 19 H -0.188 1.188 20 H -0.190 1.190 21 H -0.187 1.187 22 C -0.215 4.215 23 C -0.017 4.017 24 C 0.016 3.984 25 H 0.071 0.929 26 C 0.012 3.988 27 O -0.397 6.397 28 O -0.289 6.289 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.119 0.881 33 H 0.111 0.889 34 H 0.248 0.752 35 H 0.124 0.876 36 H 0.137 0.863 37 H 0.120 0.880 38 H 0.097 0.903 39 H 0.133 0.867 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 8.988 3.316 15.376 18.116 hybrid contribution -0.526 0.274 -0.389 0.710 sum 8.462 3.590 14.987 17.581 Atomic orbital electron populations 1.22359 0.96556 1.01615 1.03372 1.22713 0.93552 0.97651 0.84086 0.83883 1.22662 1.02682 0.79510 0.99869 1.47203 1.61853 1.11533 1.15700 1.15926 0.78364 0.84776 0.80245 1.90872 1.62977 1.14196 1.80907 1.42574 1.56526 1.13915 1.19023 1.17481 0.92921 0.92836 0.89851 1.20636 1.05904 0.95089 1.03835 1.20748 0.95675 0.98756 0.95477 1.21272 1.03349 0.96921 1.04853 1.17752 0.91880 0.91690 0.89801 1.19735 1.06820 0.93291 1.33098 0.90738 1.26650 0.99150 0.98290 0.93681 1.69816 1.26846 1.10866 1.38035 0.85252 0.77985 0.77113 0.79314 1.18848 1.19046 1.18721 1.21028 0.99031 1.01026 1.00414 1.22082 1.01840 0.96533 0.81231 1.22502 0.98545 0.83141 0.94248 0.92881 1.22079 0.98043 0.94923 0.83804 1.86472 1.72789 1.62537 1.17917 1.88041 1.71873 1.25179 1.43759 0.94439 0.91166 0.90793 0.88074 0.88901 0.75192 0.87558 0.86276 0.87996 0.90252 0.86715 0.89113 0.88641 0.90045 0.90881 0.74916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.11 8.81 71.98 0.63 -3.47 16 2 C 0.08 1.51 3.93 30.69 0.12 1.63 16 3 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 4 C 0.08 1.55 6.01 86.35 0.52 2.06 16 5 N -0.62 -17.20 2.54 -835.34 -2.12 -19.32 16 6 C 0.70 26.41 8.15 179.06 1.46 27.87 16 7 O -0.61 -27.42 13.32 -4.00 -0.05 -27.47 16 8 N -0.67 -26.12 5.25 -317.33 -1.66 -27.79 16 9 C 0.16 7.82 6.27 38.10 0.24 8.06 16 10 C -0.23 -11.39 8.70 22.58 0.20 -11.20 16 11 C -0.09 -4.17 10.02 22.20 0.22 -3.95 16 12 C -0.24 -12.43 9.79 22.75 0.22 -12.20 16 13 C 0.09 5.01 5.55 -21.31 -0.12 4.89 16 14 C -0.50 -26.89 9.06 23.46 0.21 -26.68 16 15 H 0.07 3.88 7.87 -2.92 -0.02 3.86 16 16 C 0.04 1.79 5.26 85.25 0.45 2.24 16 17 N -0.83 -41.62 10.83 21.82 0.24 -41.38 16 18 Si 0.98 37.74 29.57 68.60 2.03 39.77 16 19 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 20 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 21 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 22 C -0.19 -10.08 8.57 22.85 0.20 -9.88 16 23 C 0.11 2.47 5.91 86.35 0.51 2.98 16 24 C 0.07 1.62 2.67 30.69 0.08 1.70 16 25 H 0.05 1.39 6.25 -2.39 -0.01 1.38 16 26 C 0.09 1.41 6.71 71.98 0.48 1.89 16 27 O -0.59 -10.31 13.63 -144.71 -1.97 -12.28 16 28 O -0.37 -8.22 10.19 -144.71 -1.48 -9.70 16 29 H 0.04 1.04 6.11 -2.38 -0.01 1.02 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.09 1.85 5.66 -2.39 -0.01 1.84 16 34 H 0.41 13.52 6.33 -92.70 -0.59 12.93 16 35 H 0.11 5.19 6.28 -2.91 -0.02 5.17 16 36 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 37 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 38 H 0.29 12.98 8.30 -92.71 -0.77 12.21 16 39 H 0.12 6.07 6.22 -2.91 -0.02 6.06 16 40 H 0.09 2.38 7.12 -2.39 -0.02 2.36 16 41 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.40 2.81 9.12 -74.06 -0.68 2.13 16 Total: -1.00 -70.81 354.42 0.19 -70.62 By element: Atomic # 1 Polarization: 41.82 SS G_CDS: -0.21 Total: 41.61 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 5.43 Total: -14.06 kcal Atomic # 7 Polarization: -84.94 SS G_CDS: -3.55 Total: -88.49 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: -3.50 Total: -49.45 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Total: -70.81 0.19 -70.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455911253.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.446 kcal (2) G-P(sol) polarization free energy of solvation -70.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds