Wall clock time and date at job start Tue Mar 31 2020 13:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.51253 * 2 1 4 4 C 1.52878 * 109.40775 * 120.11777 * 2 1 3 5 5 N 1.47158 * 108.60770 * 67.84513 * 4 2 1 6 6 C 1.34775 * 120.98098 * 230.50120 * 5 4 2 7 7 O 1.21590 * 120.00219 * 184.97234 * 6 5 4 8 8 N 1.34779 * 119.99959 * 4.97512 * 6 5 4 9 9 C 1.39960 * 119.99763 * 184.37751 * 8 6 5 10 10 C 1.39284 * 119.94673 * 144.79810 * 9 8 6 11 11 C 1.38488 * 120.43099 * 180.02562 * 10 9 8 12 12 C 1.37688 * 120.32192 * 0.02562 * 11 10 9 13 13 C 1.40743 * 119.88022 * 359.97438 * 12 11 10 14 14 C 1.41405 * 120.20919 * 180.02562 * 13 12 11 15 15 H 1.08005 * 120.00008 * 214.70094 * 14 13 12 16 16 C 1.39931 * 119.99999 * 34.69457 * 14 13 12 17 17 N 1.30827 * 120.00522 * 355.67919 * 16 14 13 18 18 Si 1.86804 * 119.99848 * 175.67428 * 16 14 13 19 19 H 1.48499 * 109.47107 * 90.00417 * 18 16 14 20 20 H 1.48503 * 109.47140 * 210.00146 * 18 16 14 21 21 H 1.48498 * 109.47473 * 330.00261 * 18 16 14 22 22 C 1.38236 * 119.94936 * 324.52095 * 9 8 6 23 23 C 1.47145 * 118.03587 * 50.22443 * 5 4 2 24 24 C 1.53293 * 108.38681 * 309.72159 * 23 5 4 25 25 H 1.09008 * 109.50867 * 292.37427 * 24 23 5 26 26 C 1.52997 * 109.51539 * 172.22569 * 24 23 5 27 27 O 1.42893 * 109.47446 * 174.99725 * 26 24 23 28 28 O 1.42958 * 109.22726 * 52.29675 * 24 23 5 29 29 H 1.09001 * 109.46774 * 180.10099 * 1 2 3 30 30 H 1.08992 * 109.47379 * 300.10771 * 1 2 3 31 31 H 1.09005 * 109.47215 * 60.10854 * 1 2 3 32 32 H 1.09004 * 109.62091 * 308.02494 * 4 2 1 33 33 H 1.08999 * 109.53003 * 187.60756 * 4 2 1 34 34 H 0.96996 * 120.00186 * 4.65228 * 8 6 5 35 35 H 1.08004 * 119.78730 * 359.97438 * 10 9 8 36 36 H 1.08005 * 119.84343 * 180.02562 * 11 10 9 37 37 H 1.07995 * 120.05955 * 179.97438 * 12 11 10 38 38 H 0.96994 * 120.00749 * 179.97438 * 17 16 14 39 39 H 1.08000 * 120.15738 * 359.97438 * 22 9 8 40 40 H 1.09005 * 109.68090 * 69.44139 * 23 5 4 41 41 H 1.08997 * 109.68305 * 189.99081 * 23 5 4 42 42 H 1.08997 * 109.47417 * 294.99925 * 26 24 23 43 43 H 1.09006 * 109.46956 * 54.99582 * 26 24 23 44 44 H 0.96700 * 114.00228 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0380 -0.7235 1.2472 5 7 1.6980 -2.1507 1.1334 6 6 1.0737 -2.7975 2.1376 7 8 0.8820 -3.9958 2.0626 8 7 0.6618 -2.1158 3.2249 9 6 0.0964 -2.8001 4.3070 10 6 0.3285 -2.3578 5.6072 11 6 -0.2256 -3.0276 6.6854 12 6 -1.0123 -4.1394 6.4833 13 6 -1.2555 -4.5979 5.1751 14 6 -2.0628 -5.7386 4.9596 15 1 -1.8378 -6.4137 4.1471 16 6 -3.1531 -5.9930 5.7990 17 7 -3.3758 -5.2235 6.8333 18 14 -4.2906 -7.4312 5.4427 19 1 -3.7894 -8.6431 6.1392 20 1 -5.6581 -7.1124 5.9262 21 1 -4.3289 -7.6815 3.9794 22 6 -0.6962 -3.9104 4.0834 23 6 2.0541 -2.8494 -0.1117 24 6 1.5406 -2.0209 -1.2949 25 1 0.4506 -2.0291 -1.2992 26 6 2.0623 -2.6196 -2.6027 27 8 1.4904 -1.9189 -3.7089 28 8 2.0075 -0.6759 -1.1657 29 1 -0.3633 -1.0277 0.0018 30 1 -0.3634 0.5155 0.8889 31 1 -0.3634 0.5122 -0.8910 32 1 1.5631 -0.3026 2.1335 33 1 3.1195 -0.6086 1.3201 34 1 0.7536 -1.1507 3.2559 35 1 0.9452 -1.4874 5.7758 36 1 -0.0398 -2.6761 7.6896 37 1 -1.4419 -4.6587 7.3272 38 1 -4.1318 -5.3995 7.4150 39 1 -0.8807 -4.2512 3.0754 40 1 3.1373 -2.9520 -0.1781 41 1 1.5900 -3.8355 -0.1250 42 1 3.1479 -2.5280 -2.6366 43 1 1.7847 -3.6723 -2.6566 44 1 1.7772 -2.2461 -4.5725 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455911255.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:44 Heat of formation + Delta-G solvation = -82.900040 kcal Electronic energy + Delta-G solvation = -27322.068364 eV Core-core repulsion = 23432.983345 eV Total energy + Delta-G solvation = -3889.085020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.81793 -39.14362 -37.28135 -36.87452 -34.68894 -34.53225 -33.17526 -32.66287 -30.05303 -29.76056 -28.12108 -26.95098 -25.51292 -25.18105 -22.94133 -21.67687 -20.87022 -20.31202 -19.21769 -18.37798 -17.72479 -17.38953 -16.90552 -16.10430 -15.75613 -15.45652 -15.05467 -14.95930 -14.63063 -14.49720 -14.34440 -14.06453 -13.65754 -13.46040 -13.03029 -12.83608 -12.74839 -12.19963 -12.16828 -12.11351 -11.65261 -11.57113 -11.43959 -11.15759 -11.08556 -10.93318 -10.71717 -10.43653 -10.37477 -10.19277 -10.10748 -9.70057 -9.41627 -9.21131 -8.88337 -8.54939 -7.34058 -6.86938 -6.53017 -4.33473 2.55915 2.79736 2.95459 3.13694 3.16604 3.25157 3.38974 3.58494 3.90493 4.02109 4.07391 4.46558 4.68782 4.70884 4.75678 4.80752 4.95100 4.97752 5.07253 5.17666 5.24609 5.34713 5.45486 5.64213 5.68098 5.70999 5.74469 6.02599 6.22906 6.29286 6.38057 6.74717 6.77673 6.93297 7.06813 7.15558 7.24243 7.33823 7.37599 7.69483 7.79718 8.01088 8.17520 8.27778 8.37452 8.73528 8.89326 9.02605 9.03976 10.36311 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017006 B = 0.003178 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.054857 B = 8808.622176 C = 9844.728855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.075 3.925 3 H 0.114 0.886 4 C 0.081 3.919 5 N -0.633 5.633 6 C 0.705 3.295 7 O -0.561 6.561 8 N -0.678 5.678 9 C 0.155 3.845 10 C -0.250 4.250 11 C -0.099 4.099 12 C -0.160 4.160 13 C 0.113 3.887 14 C -0.461 4.461 15 H 0.076 0.924 16 C 0.070 3.930 17 N -0.814 5.814 18 Si 0.914 3.086 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.197 4.197 23 C 0.107 3.893 24 C 0.072 3.928 25 H 0.076 0.924 26 C 0.087 3.913 27 O -0.565 6.565 28 O -0.363 6.363 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.392 0.608 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.129 0.871 38 H 0.276 0.724 39 H 0.113 0.887 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.462 9.422 -14.011 19.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.016 3.984 3 H 0.132 0.868 4 C -0.043 4.043 5 N -0.373 5.373 6 C 0.407 3.593 7 O -0.437 6.437 8 N -0.326 5.326 9 C 0.063 3.937 10 C -0.271 4.271 11 C -0.119 4.119 12 C -0.180 4.180 13 C 0.111 3.889 14 C -0.492 4.492 15 H 0.094 0.906 16 C -0.144 4.144 17 N -0.442 5.442 18 Si 0.739 3.261 19 H -0.195 1.195 20 H -0.204 1.204 21 H -0.188 1.188 22 C -0.218 4.218 23 C -0.017 4.017 24 C 0.013 3.987 25 H 0.094 0.906 26 C 0.009 3.991 27 O -0.370 6.370 28 O -0.282 6.282 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.228 0.772 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.147 0.853 38 H 0.087 0.913 39 H 0.131 0.869 40 H 0.091 0.909 41 H 0.124 0.876 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 8.999 8.959 -13.520 18.549 hybrid contribution -0.376 -0.332 -0.245 0.558 sum 8.623 8.628 -13.765 18.392 Atomic orbital electron populations 1.22404 0.95606 1.03332 1.02975 1.22507 0.94406 0.96478 0.84974 0.86816 1.22276 1.01290 0.81638 0.99046 1.47189 1.63465 1.10129 1.16551 1.15812 0.78384 0.85165 0.79922 1.90966 1.61141 1.12447 1.79106 1.42693 1.63974 1.09480 1.16479 1.17271 0.96290 0.95634 0.84497 1.20095 1.10777 1.05182 0.91091 1.20529 0.98619 0.96703 0.96000 1.21642 1.00037 0.97993 0.98336 1.17563 0.89135 0.91824 0.90419 1.19520 1.09674 1.07578 1.12410 0.90622 1.25846 0.98279 0.96616 0.93645 1.69756 1.26992 1.35275 1.12163 0.86219 0.78976 0.81092 0.79809 1.19538 1.20360 1.18753 1.21298 1.03439 0.97867 0.99209 1.21934 1.00742 0.97208 0.81839 1.22526 0.99721 0.83184 0.93220 0.90621 1.22061 0.97329 0.94576 0.85175 1.86530 1.72242 1.61744 1.16526 1.88043 1.71957 1.25060 1.43136 0.91750 0.91248 0.91452 0.89457 0.90458 0.77173 0.89362 0.88952 0.85307 0.91278 0.86907 0.90885 0.87646 0.92529 0.91643 0.77353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.92 8.80 37.16 0.33 -1.59 16 2 C 0.07 0.73 3.92 -26.79 -0.11 0.62 16 3 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.08 0.83 5.99 -3.75 -0.02 0.81 16 5 N -0.63 -8.73 2.55 -178.26 -0.45 -9.19 16 6 C 0.70 13.05 8.15 -86.92 -0.71 12.34 16 7 O -0.56 -12.86 13.30 5.29 0.07 -12.79 16 8 N -0.68 -12.34 5.24 -14.27 -0.07 -12.41 16 9 C 0.16 3.54 6.29 -83.76 -0.53 3.01 16 10 C -0.25 -5.49 9.97 -39.10 -0.39 -5.88 16 11 C -0.10 -2.33 10.02 -39.69 -0.40 -2.72 16 12 C -0.16 -4.24 8.67 -38.84 -0.34 -4.58 16 13 C 0.11 3.15 5.55 -106.85 -0.59 2.56 16 14 C -0.46 -12.87 9.04 -37.74 -0.34 -13.21 16 15 H 0.08 2.09 7.85 -52.48 -0.41 1.68 16 16 C 0.07 1.84 5.42 -17.35 -0.09 1.75 16 17 N -0.81 -21.61 10.60 55.55 0.59 -21.02 16 18 Si 0.91 19.66 29.56 -169.99 -5.03 14.64 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 21 H -0.26 -5.67 7.11 56.52 0.40 -5.26 16 22 C -0.20 -5.16 8.43 -38.69 -0.33 -5.49 16 23 C 0.11 1.30 5.91 -3.54 -0.02 1.27 16 24 C 0.07 0.81 2.67 -26.58 -0.07 0.74 16 25 H 0.08 0.96 6.25 -51.92 -0.32 0.63 16 26 C 0.09 0.76 6.71 37.16 0.25 1.01 16 27 O -0.57 -5.38 13.63 -39.72 -0.54 -5.92 16 28 O -0.36 -4.22 10.19 -39.72 -0.40 -4.63 16 29 H 0.06 0.81 6.12 -51.93 -0.32 0.50 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.79 5.64 -51.93 -0.29 0.50 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.39 5.62 6.35 -40.82 -0.26 5.37 16 35 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 36 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 37 H 0.13 3.53 6.13 -52.49 -0.32 3.21 16 38 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 39 H 0.11 3.08 6.25 -52.49 -0.33 2.75 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.11 1.42 7.12 -51.93 -0.37 1.05 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.38 1.69 9.12 45.56 0.42 2.11 16 LS Contribution 354.16 15.07 5.34 5.34 Total: -1.00 -33.85 354.16 -9.01 -42.86 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -5.15 Total: 12.47 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -3.36 Total: -9.36 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 0.06 Total: -42.61 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.88 Total: -23.33 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.85 -9.01 -42.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455911255.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.039 kcal (2) G-P(sol) polarization free energy of solvation -33.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds