Wall clock time and date at job start Tue Mar 31 2020 12:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47270 * 2 1 4 4 O 1.45199 * 109.46945 * 120.00028 * 2 1 3 5 5 C 1.34236 * 116.99987 * 90.00026 * 4 2 1 6 6 O 1.20822 * 119.99997 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99778 * 180.02562 * 5 4 2 8 8 C 1.52994 * 109.47018 * 179.97438 * 7 5 4 9 9 N 1.46494 * 109.47395 * 179.97438 * 8 7 5 10 10 C 1.34779 * 120.00343 * 179.97438 * 9 8 7 11 11 O 1.21588 * 120.00022 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99980 * 179.97438 * 10 9 8 13 13 C 1.39959 * 119.99583 * 174.29043 * 12 10 9 14 14 C 1.39290 * 119.94307 * 145.42670 * 13 12 10 15 15 C 1.38488 * 120.42403 * 179.97438 * 14 13 12 16 16 C 1.37683 * 120.32542 * 0.29743 * 15 14 13 17 17 C 1.40749 * 119.87885 * 359.43258 * 16 15 14 18 18 C 1.41410 * 120.20531 * 180.31234 * 17 16 15 19 19 H 1.08000 * 119.99443 * 214.42379 * 18 17 16 20 20 C 1.39932 * 120.00288 * 34.42826 * 18 17 16 21 21 N 1.30833 * 119.99587 * 5.53272 * 20 18 17 22 22 Si 1.86795 * 120.00024 * 185.53626 * 20 18 17 23 23 H 1.48502 * 109.47109 * 59.99658 * 22 20 18 24 24 H 1.48500 * 109.47249 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46905 * 299.99776 * 22 20 18 26 26 C 1.38236 * 119.94514 * 325.39533 * 13 12 10 27 27 H 1.09004 * 109.46992 * 59.99917 * 1 2 3 28 28 H 1.09005 * 109.47067 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47559 * 300.00312 * 1 2 3 30 30 H 1.09000 * 109.46868 * 239.99425 * 2 1 3 31 31 H 1.09000 * 109.47350 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.47181 * 299.99967 * 3 2 1 33 33 H 1.09000 * 109.47644 * 59.99901 * 3 2 1 34 34 H 1.08995 * 109.47215 * 59.99774 * 7 5 4 35 35 H 1.08997 * 109.46861 * 300.00213 * 7 5 4 36 36 H 1.09008 * 109.47421 * 59.99753 * 8 7 5 37 37 H 1.08999 * 109.47175 * 300.00241 * 8 7 5 38 38 H 0.97007 * 120.00091 * 359.97438 * 9 8 7 39 39 H 0.96995 * 120.00130 * 354.29199 * 12 10 9 40 40 H 1.07995 * 119.78747 * 359.97438 * 14 13 12 41 41 H 1.08001 * 119.83503 * 180.02562 * 15 14 13 42 42 H 1.07995 * 120.05688 * 179.69942 * 16 15 14 43 43 H 0.97001 * 119.99616 * 179.97438 * 21 20 18 44 44 H 1.07995 * 120.15986 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0139 -0.6845 1.1856 5 6 2.2171 -2.0076 1.0851 6 8 1.9973 -2.5750 0.0413 7 6 2.7181 -2.7854 2.2747 8 6 2.8622 -4.2606 1.8955 9 7 3.3499 -5.0166 3.0516 10 6 3.5530 -6.3452 2.9510 11 8 3.3319 -6.9163 1.9006 12 7 4.0021 -7.0407 4.0146 13 6 4.0994 -8.4353 3.9483 14 6 5.1314 -9.0927 4.6138 15 6 5.2369 -10.4723 4.5553 16 6 4.3253 -11.2092 3.8330 17 6 3.2739 -10.5590 3.1601 18 6 2.3300 -11.3097 2.4217 19 1 1.9053 -10.9020 1.5162 20 6 1.9461 -12.5805 2.8641 21 7 2.3764 -13.0299 4.0150 22 14 0.8196 -13.6351 1.8115 23 1 1.4655 -13.8920 0.4992 24 1 0.5656 -14.9267 2.4990 25 1 -0.4673 -12.9253 1.5993 26 6 3.1708 -9.1581 3.2229 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 2.0086 -2.6895 3.0965 35 1 3.6869 -2.3929 2.5835 36 1 3.5716 -4.3568 1.0734 37 1 1.8932 -4.6527 1.5869 38 1 3.5267 -4.5611 3.8896 39 1 4.2579 -6.5747 4.8259 40 1 5.8540 -8.5229 5.1790 41 1 6.0407 -10.9723 5.0753 42 1 4.4145 -12.2845 3.7864 43 1 2.1100 -13.9107 4.3219 44 1 2.3697 -8.6493 2.7074 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455917877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:02 Heat of formation + Delta-G solvation = -127.081591 kcal Electronic energy + Delta-G solvation = -25498.196601 eV Core-core repulsion = 21607.195726 eV Total energy + Delta-G solvation = -3891.000875 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.76077 -41.36626 -39.21339 -38.12378 -36.49582 -36.01154 -34.81048 -34.19928 -32.15671 -31.70673 -29.65262 -28.21531 -27.22759 -25.92256 -23.44035 -22.77902 -22.59346 -21.79325 -21.43400 -19.66668 -19.28967 -18.85686 -17.66924 -17.49434 -17.29706 -16.90656 -16.59572 -16.40016 -15.86247 -15.63484 -15.33151 -15.08045 -14.85343 -14.63619 -14.58470 -14.09662 -13.94043 -13.54527 -13.19230 -13.18021 -13.03842 -12.98547 -12.89373 -12.83020 -12.74753 -12.58783 -12.17767 -12.01608 -11.92402 -11.72241 -11.53406 -11.47990 -11.22724 -11.08475 -10.76635 -10.19774 -9.29383 -8.69709 -8.50019 -6.38359 0.93455 1.02703 1.11981 1.31899 1.35929 1.47862 1.49751 1.93696 2.17499 2.23689 2.80822 3.29263 3.48618 3.72030 3.80110 3.83978 3.92346 3.99941 4.13755 4.40105 4.49077 4.64168 4.65834 4.74261 4.74330 4.80889 4.83841 4.87328 5.05756 5.11460 5.12330 5.15294 5.19228 5.21326 5.33048 5.35940 5.48933 5.74188 5.85002 6.06466 6.13091 6.19440 6.39804 6.67281 6.71537 6.97212 7.02522 7.12295 7.59608 8.42965 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018494 B = 0.002163 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.609062 B =12943.727862 C =14233.035900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.069 3.931 3 C -0.143 4.143 4 O -0.351 6.351 5 C 0.466 3.534 6 O -0.543 6.543 7 C -0.109 4.109 8 C 0.152 3.848 9 N -0.720 5.720 10 C 0.694 3.306 11 O -0.621 6.621 12 N -0.666 5.666 13 C 0.170 3.830 14 C -0.236 4.236 15 C -0.095 4.095 16 C -0.183 4.183 17 C 0.087 3.913 18 C -0.509 4.509 19 H 0.058 0.942 20 C 0.034 3.966 21 N -0.837 5.837 22 Si 0.982 3.018 23 H -0.263 1.263 24 H -0.260 1.260 25 H -0.266 1.266 26 C -0.227 4.227 27 H 0.092 0.908 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.420 0.580 39 H 0.421 0.579 40 H 0.138 0.862 41 H 0.127 0.873 42 H 0.101 0.899 43 H 0.286 0.714 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.603 27.278 1.540 27.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.015 3.985 3 C -0.200 4.200 4 O -0.268 6.268 5 C 0.310 3.690 6 O -0.433 6.433 7 C -0.146 4.146 8 C 0.027 3.973 9 N -0.379 5.379 10 C 0.394 3.606 11 O -0.500 6.500 12 N -0.315 5.315 13 C 0.076 3.924 14 C -0.257 4.257 15 C -0.113 4.113 16 C -0.203 4.203 17 C 0.084 3.916 18 C -0.540 4.540 19 H 0.076 0.924 20 C -0.179 4.179 21 N -0.465 5.465 22 Si 0.803 3.197 23 H -0.188 1.188 24 H -0.184 1.184 25 H -0.191 1.191 26 C -0.249 4.249 27 H 0.111 0.889 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.163 0.837 35 H 0.167 0.833 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.259 0.741 39 H 0.259 0.741 40 H 0.156 0.844 41 H 0.145 0.855 42 H 0.119 0.881 43 H 0.097 0.903 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.280 26.523 0.423 26.528 hybrid contribution -0.606 -0.494 -0.192 0.805 sum -0.326 26.029 0.232 26.032 Atomic orbital electron populations 1.22219 0.93590 1.02231 1.04540 1.23006 0.95351 0.94202 0.85961 1.21897 1.02138 0.91529 1.04475 1.86548 1.76807 1.21495 1.41902 1.23864 0.73518 0.81666 0.89920 1.90728 1.49310 1.70670 1.32616 1.21448 1.07352 0.90686 0.95139 1.20748 0.99420 0.89647 0.87486 1.44607 1.71816 1.04995 1.16512 1.16168 0.78463 0.82401 0.83549 1.90987 1.58755 1.70089 1.30149 1.42250 1.68369 1.04708 1.16168 1.17295 0.94755 0.81097 0.99234 1.20527 1.00423 0.94344 1.10437 1.20875 0.98375 0.93764 0.98316 1.21295 0.95903 0.99278 1.03824 1.17842 0.91522 0.91197 0.91036 1.19635 1.23423 1.01454 1.09481 0.92361 1.26625 0.97342 0.98067 0.95847 1.69821 1.39406 1.18782 1.18458 0.85260 0.78301 0.77312 0.78784 1.18766 1.18429 1.19082 1.21051 1.01384 0.94110 1.08309 0.88949 0.94027 0.90387 0.91317 0.91620 0.88627 0.90509 0.83671 0.83272 0.92737 0.93275 0.74145 0.74067 0.84434 0.85535 0.88105 0.90347 0.90052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 9.55 71.98 0.69 -1.45 16 2 C 0.07 0.99 3.18 30.59 0.10 1.09 16 3 C -0.14 -1.17 9.57 71.98 0.69 -0.49 16 4 O -0.35 -5.70 9.88 -51.48 -0.51 -6.20 16 5 C 0.47 8.96 7.93 71.24 0.56 9.52 16 6 O -0.54 -15.27 15.20 21.98 0.33 -14.93 16 7 C -0.11 -1.32 5.93 29.85 0.18 -1.14 16 8 C 0.15 3.49 4.96 86.38 0.43 3.92 16 9 N -0.72 -16.13 5.56 -478.54 -2.66 -18.79 16 10 C 0.69 24.95 8.28 179.05 1.48 26.43 16 11 O -0.62 -30.50 14.13 -3.99 -0.06 -30.56 16 12 N -0.67 -22.40 5.34 -317.31 -1.70 -24.10 16 13 C 0.17 7.67 6.25 38.10 0.24 7.91 16 14 C -0.24 -9.73 9.97 22.58 0.23 -9.50 16 15 C -0.09 -4.29 10.02 22.20 0.22 -4.07 16 16 C -0.18 -9.99 8.62 22.75 0.20 -9.80 16 17 C 0.09 5.12 5.50 -21.30 -0.12 5.00 16 18 C -0.51 -30.62 9.04 23.46 0.21 -30.40 16 19 H 0.06 3.54 7.85 -2.91 -0.02 3.52 16 20 C 0.03 1.84 5.31 85.25 0.45 2.29 16 21 N -0.84 -46.19 10.97 21.82 0.24 -45.95 16 22 Si 0.98 41.99 29.56 68.60 2.03 44.02 16 23 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 24 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 26 C -0.23 -12.55 8.39 22.85 0.19 -12.36 16 27 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 1.23 7.16 -2.39 -0.02 1.22 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.15 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.15 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.05 1.52 8.10 -2.38 -0.02 1.50 16 37 H 0.05 1.43 8.10 -2.39 -0.02 1.41 16 38 H 0.42 4.98 8.49 -92.70 -0.79 4.19 16 39 H 0.42 9.49 8.84 -92.71 -0.82 8.67 16 40 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 41 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 42 H 0.10 5.74 6.48 -2.91 -0.02 5.72 16 43 H 0.29 14.26 8.30 -92.71 -0.77 13.49 16 44 H 0.08 4.83 6.51 -2.91 -0.02 4.81 16 Total: -1.00 -83.61 375.54 2.85 -80.76 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: -0.57 Total: 28.81 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 5.75 Total: -13.05 kcal Atomic # 7 Polarization: -84.72 SS G_CDS: -4.12 Total: -88.84 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -0.23 Total: -51.69 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -83.61 2.85 -80.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455917877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.324 kcal (2) G-P(sol) polarization free energy of solvation -83.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds