Wall clock time and date at job start Tue Mar 31 2020 13:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34229 * 116.99794 * 2 1 4 4 O 1.20828 * 120.00043 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99915 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.46985 * 60.00414 * 5 3 2 7 7 C 1.53000 * 109.47183 * 300.00341 * 5 3 2 8 8 C 1.53002 * 109.46966 * 180.02562 * 5 3 2 9 9 C 1.50707 * 109.46836 * 185.00054 * 8 5 3 10 10 C 1.38288 * 119.92803 * 90.00025 * 9 8 5 11 11 C 1.38108 * 120.06804 * 180.02562 * 10 9 8 12 12 C 1.38867 * 119.93160 * 0.23502 * 11 10 9 13 13 N 1.39945 * 120.06676 * 179.74766 * 12 11 10 14 14 C 1.34773 * 120.00696 * 33.26275 * 13 12 11 15 15 O 1.21587 * 119.99365 * 5.32287 * 14 13 12 16 16 N 1.34768 * 120.00503 * 185.31328 * 14 13 12 17 17 C 1.46501 * 120.00209 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.46945 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00530 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99876 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99590 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00018 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47485 * 359.97438 * 22 20 18 24 24 H 1.48508 * 109.47362 * 119.99747 * 22 20 18 25 25 H 1.48497 * 109.47265 * 239.99584 * 22 20 18 26 26 C 1.38869 * 119.85828 * 359.47004 * 12 11 10 27 27 C 1.38112 * 119.92624 * 0.55138 * 26 12 11 28 28 H 1.08999 * 109.47324 * 59.99778 * 1 2 3 29 29 H 1.09002 * 109.47445 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47524 * 299.99991 * 1 2 3 31 31 H 1.09001 * 109.46587 * 179.97438 * 7 5 3 32 32 H 1.08994 * 109.47005 * 299.99680 * 7 5 3 33 33 H 1.08997 * 109.46808 * 60.00121 * 7 5 3 34 34 H 1.08997 * 109.47195 * 65.00747 * 8 5 3 35 35 H 1.09000 * 109.47554 * 304.99881 * 8 5 3 36 36 H 1.07999 * 119.96442 * 0.02562 * 10 9 8 37 37 H 1.08002 * 120.02994 * 179.97438 * 11 10 9 38 38 H 0.97001 * 119.99262 * 213.26733 * 13 12 11 39 39 H 0.97003 * 119.99770 * 0.02562 * 16 14 13 40 40 H 1.08990 * 109.47267 * 300.00748 * 17 16 14 41 41 H 1.08997 * 109.46730 * 60.00878 * 17 16 14 42 42 H 0.97003 * 119.99841 * 180.02562 * 21 20 18 43 43 H 1.07994 * 120.03373 * 180.25020 * 26 12 11 44 44 H 1.08006 * 119.95957 * 179.69918 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9563 0.7807 -0.8892 7 6 4.1128 0.5815 1.2501 8 6 4.0000 2.7422 0.0011 9 6 5.4999 2.8226 -0.1222 10 6 6.0868 2.8893 -1.3725 11 6 7.4610 2.9626 -1.4889 12 6 8.2538 2.9643 -0.3488 13 7 9.6468 3.0331 -0.4635 14 6 10.2064 3.7318 -1.4711 15 8 9.5056 4.3813 -2.2229 16 7 11.5426 3.7106 -1.6451 17 6 12.1508 4.4696 -2.7407 18 6 13.6454 4.2786 -2.7150 19 1 14.0972 3.6545 -1.9582 20 6 14.4363 4.9013 -3.6573 21 7 13.8862 5.6624 -4.5781 22 14 16.2888 4.6639 -3.6260 23 1 16.6542 3.7686 -2.4990 24 1 16.7316 4.0550 -4.9061 25 1 16.9535 5.9798 -3.4478 26 6 7.6610 2.9034 0.9056 27 6 6.2862 2.8298 1.0152 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 5.2014 0.6383 1.2502 32 1 3.7228 1.0758 2.1398 33 1 3.8038 -0.4637 1.2501 34 1 3.6863 3.2135 0.9325 35 1 3.5381 3.2580 -0.8407 36 1 5.4698 2.8842 -2.2590 37 1 7.9187 3.0143 -2.4657 38 1 10.2096 2.5778 0.1821 39 1 12.1017 3.1922 -1.0454 40 1 11.7556 4.1142 -3.6922 41 1 11.9174 5.5278 -2.6228 42 1 14.4425 6.1003 -5.2412 43 1 8.2747 2.9086 1.7942 44 1 5.8249 2.7775 1.9903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488800688.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:34 Heat of formation + Delta-G solvation = -125.130685 kcal Electronic energy + Delta-G solvation = -25479.011604 eV Core-core repulsion = 21588.095326 eV Total energy + Delta-G solvation = -3890.916278 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.75078 -41.49666 -39.91055 -37.73842 -36.78967 -36.07224 -35.07106 -34.28119 -31.86639 -31.17019 -29.25674 -28.56476 -27.31531 -25.17514 -24.47665 -23.82500 -22.53646 -21.70558 -20.95629 -19.86739 -18.78499 -18.64490 -17.98075 -17.78566 -17.32789 -16.85534 -16.71167 -16.17004 -16.05163 -15.74893 -15.18884 -15.04454 -14.88090 -14.55068 -14.34679 -14.20993 -14.07161 -14.03744 -13.78050 -13.45319 -13.15886 -12.88197 -12.85865 -12.76020 -12.42992 -12.23997 -12.20694 -12.17941 -11.89690 -11.76908 -11.45508 -11.37499 -11.33363 -11.01951 -10.82318 -9.91813 -9.79092 -8.87901 -8.29196 -6.45677 0.34337 0.53141 1.15329 1.44043 1.45479 1.58416 1.74636 1.76898 2.12108 2.39045 2.91169 3.06343 3.41542 3.62299 3.85495 3.89490 4.07231 4.12045 4.22056 4.30265 4.33080 4.38987 4.50028 4.55276 4.66572 4.72056 4.86500 4.91613 4.98177 5.03369 5.14215 5.18371 5.24618 5.30644 5.36579 5.41329 5.43049 5.46447 5.62239 5.67229 5.74387 5.82614 6.15254 6.21056 6.65731 6.70422 7.17775 7.25281 7.60300 8.83256 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.040852 B = 0.001820 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.243481 B =15377.812112 C =15618.234011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.539 6.539 5 C -0.075 4.075 6 H 0.119 0.881 7 C -0.144 4.144 8 C -0.055 4.055 9 C -0.101 4.101 10 C -0.100 4.100 11 C -0.147 4.147 12 C 0.152 3.848 13 N -0.674 5.674 14 C 0.690 3.310 15 O -0.628 6.628 16 N -0.715 5.715 17 C 0.284 3.716 18 C -0.555 4.555 19 H 0.086 0.914 20 C 0.004 3.996 21 N -0.930 5.930 22 Si 0.987 3.013 23 H -0.252 1.252 24 H -0.279 1.279 25 H -0.280 1.280 26 C -0.142 4.142 27 C -0.084 4.084 28 H 0.058 0.942 29 H 0.130 0.870 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.129 0.871 37 H 0.100 0.900 38 H 0.423 0.577 39 H 0.407 0.593 40 H -0.012 1.012 41 H -0.012 1.012 42 H 0.269 0.731 43 H 0.153 0.847 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.643 -15.200 16.443 31.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.311 3.689 4 O -0.429 6.429 5 C -0.094 4.094 6 H 0.137 0.863 7 C -0.201 4.201 8 C -0.093 4.093 9 C -0.102 4.102 10 C -0.118 4.118 11 C -0.167 4.167 12 C 0.057 3.943 13 N -0.324 5.324 14 C 0.390 3.610 15 O -0.509 6.509 16 N -0.369 5.369 17 C 0.161 3.839 18 C -0.593 4.593 19 H 0.104 0.896 20 C -0.196 4.196 21 N -0.569 5.569 22 Si 0.810 3.190 23 H -0.176 1.176 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.162 4.162 27 C -0.102 4.102 28 H 0.077 0.923 29 H 0.148 0.852 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.147 0.853 37 H 0.118 0.882 38 H 0.261 0.739 39 H 0.243 0.757 40 H 0.006 0.994 41 H 0.006 0.994 42 H 0.078 0.922 43 H 0.171 0.829 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -22.357 -14.225 15.579 30.739 hybrid contribution 1.123 0.165 -0.436 1.216 sum -21.234 -14.060 15.143 29.629 Atomic orbital electron populations 1.23535 0.75057 1.05631 1.02422 1.86510 1.24765 1.32950 1.83594 1.24223 0.92702 0.81047 0.70910 1.90666 1.68047 1.37377 1.46771 1.21093 0.85482 0.98644 1.04140 0.86350 1.21864 1.02831 1.00864 0.94497 1.20352 0.90473 0.94134 1.04292 1.19721 0.95267 1.02402 0.92796 1.21001 0.93179 0.99365 0.98276 1.21121 0.94728 1.02947 0.97954 1.17852 0.81666 1.00034 0.94742 1.42472 1.05644 1.53985 1.30261 1.16290 0.82902 0.80136 0.81669 1.90875 1.62400 1.48439 1.49155 1.45321 1.04339 1.52649 1.34564 1.18470 0.92515 0.89365 0.83567 1.21631 0.90881 1.31342 1.15422 0.89636 1.26066 1.05191 0.94038 0.94296 1.70150 1.38169 1.31501 1.17074 0.85080 0.77111 0.78217 0.78592 1.17559 1.20521 1.20533 1.21118 0.95942 1.04173 0.94993 1.21131 0.92050 0.97944 0.99107 0.92274 0.85165 0.91890 0.89752 0.91398 0.90683 0.89495 0.91102 0.85337 0.88224 0.73863 0.75692 0.99375 0.99427 0.92243 0.82916 0.82401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.36 -5.50 10.47 -51.41 -0.54 -6.04 16 3 C 0.47 8.23 7.26 71.24 0.52 8.74 16 4 O -0.54 -12.72 15.67 21.96 0.34 -12.38 16 5 C -0.07 -1.03 2.82 -11.54 -0.03 -1.06 16 6 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 7 C -0.14 -1.41 8.69 71.98 0.63 -0.78 16 8 C -0.06 -0.90 4.19 29.85 0.12 -0.77 16 9 C -0.10 -1.94 4.72 -19.84 -0.09 -2.03 16 10 C -0.10 -2.48 9.69 22.25 0.22 -2.27 16 11 C -0.15 -4.68 8.65 22.39 0.19 -4.48 16 12 C 0.15 4.30 6.28 38.15 0.24 4.54 16 13 N -0.67 -19.91 5.35 -317.19 -1.70 -21.60 16 14 C 0.69 28.67 8.30 179.06 1.49 30.16 16 15 O -0.63 -32.28 14.03 -3.99 -0.06 -32.33 16 16 N -0.72 -30.30 5.55 -482.33 -2.68 -32.98 16 17 C 0.28 15.61 5.43 85.63 0.46 16.07 16 18 C -0.55 -29.92 9.28 25.60 0.24 -29.68 16 19 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 20 C 0.00 0.21 5.46 84.66 0.46 0.67 16 21 N -0.93 -55.99 13.29 21.45 0.28 -55.71 16 22 Si 0.99 41.97 29.54 68.60 2.03 44.00 16 23 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 24 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 26 C -0.14 -2.80 9.96 22.39 0.22 -2.58 16 27 C -0.08 -1.39 7.95 22.25 0.18 -1.22 16 28 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 29 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.65 8.13 -2.38 -0.02 0.63 16 31 H 0.08 0.79 6.27 -2.39 -0.01 0.78 16 32 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.66 8.11 -2.39 -0.02 0.64 16 34 H 0.09 1.32 8.08 -2.39 -0.02 1.30 16 35 H 0.07 1.33 7.90 -2.39 -0.02 1.31 16 36 H 0.13 2.89 8.06 -2.91 -0.02 2.86 16 37 H 0.10 3.93 6.41 -2.91 -0.02 3.91 16 38 H 0.42 8.76 8.84 -92.71 -0.82 7.94 16 39 H 0.41 13.90 8.34 -92.71 -0.77 13.12 16 40 H -0.01 -0.73 8.14 -2.39 -0.02 -0.74 16 41 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 42 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 43 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 44 H 0.16 1.57 8.04 -2.91 -0.02 1.54 16 Total: -1.00 -78.40 375.41 3.16 -75.24 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -0.56 Total: 25.02 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 6.04 Total: 16.78 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -4.09 Total: -110.29 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -0.25 Total: -50.75 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -78.40 3.16 -75.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488800688.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.895 kcal (2) G-P(sol) polarization free energy of solvation -78.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds