Wall clock time and date at job start Tue Mar 31 2020 13:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47000 * 2 1 4 4 C 1.50694 * 109.47090 * 239.99968 * 2 1 3 5 5 H 1.07999 * 119.99886 * 239.99483 * 4 2 1 6 6 C 1.37880 * 120.00202 * 60.00504 * 4 2 1 7 7 N 1.31513 * 119.99851 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00076 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47133 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47419 * 119.99375 * 8 6 4 11 11 H 1.48502 * 109.46885 * 239.99568 * 8 6 4 12 12 N 1.46508 * 109.46958 * 119.99910 * 2 1 3 13 13 C 1.46499 * 119.99679 * 60.00022 * 12 2 1 14 14 C 1.34772 * 119.99665 * 240.00010 * 12 2 1 15 15 O 1.21279 * 120.00335 * 0.02562 * 14 12 2 16 16 C 1.50702 * 119.99867 * 180.02562 * 14 12 2 17 17 C 1.52995 * 109.47279 * 180.02562 * 16 14 12 18 18 N 1.46502 * 109.47041 * 180.02562 * 17 16 14 19 19 C 1.34776 * 119.99814 * 180.02562 * 18 17 16 20 20 O 1.21773 * 120.00237 * 359.97438 * 19 18 17 21 21 C 1.41557 * 119.99762 * 180.27633 * 19 18 17 22 22 C 1.35626 * 119.99616 * 186.06298 * 21 19 18 23 23 C 1.41600 * 120.00628 * 8.85373 * 22 21 19 24 24 C 1.37955 * 126.10479 * 219.80683 * 23 22 21 25 25 C 1.40316 * 106.52697 * 179.84863 * 24 23 22 26 26 C 1.35159 * 107.20837 * 0.40349 * 25 24 23 27 27 O 1.34026 * 109.03199 * 359.74473 * 26 25 24 28 28 H 1.08997 * 109.46865 * 300.00068 * 1 2 3 29 29 H 1.09001 * 109.46978 * 59.99770 * 1 2 3 30 30 H 1.08996 * 109.47000 * 179.97438 * 1 2 3 31 31 H 0.96995 * 120.00121 * 180.02562 * 7 6 4 32 32 H 1.08993 * 109.47331 * 269.99597 * 13 12 2 33 33 H 1.08998 * 109.47112 * 30.00152 * 13 12 2 34 34 H 1.09007 * 109.46705 * 150.00003 * 13 12 2 35 35 H 1.08994 * 109.47217 * 59.99722 * 16 14 12 36 36 H 1.09005 * 109.46752 * 300.00489 * 16 14 12 37 37 H 1.08999 * 109.47494 * 60.00061 * 17 16 14 38 38 H 1.09002 * 109.47125 * 299.99402 * 17 16 14 39 39 H 0.96997 * 120.00012 * 359.97438 * 18 17 16 40 40 H 1.08002 * 120.00189 * 6.05624 * 21 19 18 41 41 H 1.08012 * 119.99485 * 188.85202 * 22 21 19 42 42 H 1.07994 * 126.73651 * 359.95911 * 24 23 22 43 43 H 1.08004 * 126.39835 * 180.15015 * 25 24 23 44 44 H 1.07997 * 125.48576 * 179.72054 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6994 -0.2393 -2.4827 7 7 0.9430 0.8297 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 3.1464 -2.2870 -3.6037 10 1 1.1663 -1.5867 -4.8160 11 1 3.1467 -0.1873 -4.8164 12 7 2.0184 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0834 15 8 3.0858 1.1257 1.8917 16 6 3.2960 -0.7461 3.3136 17 6 4.1453 0.2157 4.1468 18 7 4.6346 -0.4752 5.3424 19 6 5.4087 0.1801 6.2300 20 8 5.7018 1.3463 6.0380 21 6 5.8862 -0.4893 7.3823 22 6 6.5608 0.1999 8.3360 23 6 6.6263 1.6131 8.2755 24 6 7.7290 2.3890 8.5676 25 6 7.3419 3.7231 8.3699 26 6 6.0468 3.7106 7.9833 27 8 5.6196 2.4415 7.9274 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.7084 1.1609 -3.4844 32 1 0.7376 -2.1444 1.9993 33 1 1.5295 -2.5968 0.4708 34 1 2.4629 -2.5819 1.9864 35 1 3.9017 -1.6022 3.0167 36 1 2.4483 -1.0891 3.9069 37 1 3.5393 1.0716 4.4438 38 1 4.9930 0.5590 3.5536 39 1 4.4008 -1.4040 5.4955 40 1 5.7133 -1.5486 7.5020 41 1 7.0480 -0.3294 9.1416 42 1 8.7000 2.0382 8.8842 43 1 7.9617 4.5971 8.5058 44 1 5.4519 4.5829 7.7563 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492126307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:16 Heat of formation + Delta-G solvation = -28.558382 kcal Electronic energy + Delta-G solvation = -26131.787380 eV Core-core repulsion = 22245.058791 eV Total energy + Delta-G solvation = -3886.728588 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.46989 -39.90720 -39.06817 -35.67164 -35.04264 -34.14832 -32.91116 -32.89901 -31.12651 -29.37927 -28.57817 -26.14053 -25.27132 -24.98871 -23.00026 -21.73113 -21.17248 -20.89389 -19.66656 -18.39347 -17.86432 -16.90940 -16.50975 -16.32183 -15.97715 -15.74916 -15.46348 -15.15623 -14.70798 -14.42425 -14.24691 -13.99543 -13.45647 -13.24090 -12.92311 -12.76836 -12.63172 -12.49583 -12.43031 -12.27812 -11.96109 -11.56606 -11.39211 -11.33117 -11.06309 -10.83450 -10.69880 -10.31103 -10.25521 -10.18960 -10.05055 -9.83831 -9.19857 -9.02402 -8.97282 -8.44138 -8.09574 -7.61643 -6.08624 -4.16748 0.38075 2.02818 2.58474 3.08420 3.19138 3.24746 3.31665 3.34010 3.35292 3.37227 4.02084 4.38881 4.53616 4.70041 4.88877 4.93774 4.97834 5.09931 5.17392 5.20112 5.23264 5.50166 5.53226 5.57780 5.75413 5.81818 5.84501 5.96809 6.05380 6.08592 6.18103 6.33128 6.41184 6.45150 6.74303 6.82011 7.05205 7.12251 7.39440 7.46489 7.53072 7.70391 8.00290 8.18612 8.23002 8.50295 8.81549 9.02548 9.49767 10.96782 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024400 B = 0.002197 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.284699 B =12743.015642 C =13059.796158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.256 3.744 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.593 5.593 13 C 0.083 3.917 14 C 0.506 3.494 15 O -0.549 6.549 16 C -0.152 4.152 17 C 0.137 3.863 18 N -0.727 5.727 19 C 0.534 3.466 20 O -0.522 6.522 21 C -0.204 4.204 22 C 0.004 3.996 23 C 0.004 3.996 24 C -0.181 4.181 25 C -0.228 4.228 26 C -0.012 4.012 27 O -0.133 6.133 28 H 0.011 0.989 29 H 0.093 0.907 30 H 0.029 0.971 31 H 0.263 0.737 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.398 0.602 40 H 0.137 0.863 41 H 0.155 0.845 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.352 -5.360 23.405 25.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.156 3.844 3 H 0.081 0.919 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.324 5.324 13 C -0.061 4.061 14 C 0.292 3.708 15 O -0.428 6.428 16 C -0.192 4.192 17 C 0.013 3.987 18 N -0.379 5.379 19 C 0.323 3.677 20 O -0.400 6.400 21 C -0.225 4.225 22 C -0.016 4.016 23 C -0.047 4.047 24 C -0.200 4.200 25 C -0.247 4.247 26 C -0.083 4.083 27 O -0.026 6.026 28 H 0.030 0.970 29 H 0.112 0.888 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.231 0.769 40 H 0.155 0.845 41 H 0.172 0.828 42 H 0.165 0.835 43 H 0.164 0.836 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 8.298 -3.899 22.874 24.643 hybrid contribution 0.293 -1.061 -0.936 1.445 sum 8.591 -4.960 21.939 24.077 Atomic orbital electron populations 1.22077 0.98165 0.99362 1.00813 1.18961 0.90903 0.94601 0.79926 0.91857 1.21342 1.31789 1.13002 0.90290 0.92212 1.24906 0.94954 0.94990 0.99011 1.69888 1.36324 1.22607 1.23680 0.86433 0.78577 0.79568 0.82762 1.19842 1.20936 1.20894 1.48243 1.48951 1.11641 1.23575 1.21606 0.98714 0.83324 1.02432 1.20087 0.79475 0.87122 0.84110 1.90689 1.58279 1.17063 1.76798 1.21841 1.00991 0.99911 0.96485 1.21035 0.98444 0.94583 0.84633 1.45966 1.52364 1.15566 1.24007 1.17123 0.79424 0.86975 0.84137 1.90905 1.56601 1.16053 1.76460 1.22283 1.03366 1.01425 0.95445 1.20617 0.94846 0.88945 0.97209 1.19569 0.88537 0.91260 1.05300 1.22137 0.99003 0.92867 1.06016 1.21627 0.96237 0.97888 1.08998 1.24196 0.96068 0.85540 1.02483 1.84281 1.37660 1.15780 1.64841 0.97028 0.88839 0.95186 0.92710 0.93876 0.90059 0.92841 0.88852 0.89007 0.90597 0.90569 0.76869 0.84474 0.82792 0.83490 0.83623 0.78474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.97 37.16 0.33 -3.15 16 2 C 0.26 6.54 2.64 -69.08 -0.18 6.35 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -14.12 7.99 -34.44 -0.28 -14.40 16 5 H 0.06 1.57 7.33 -52.49 -0.38 1.19 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 8 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 9 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.59 -12.36 2.75 -175.26 -0.48 -12.85 16 13 C 0.08 1.32 9.24 59.85 0.55 1.87 16 14 C 0.51 10.20 7.67 -10.99 -0.08 10.11 16 15 O -0.55 -13.59 15.31 5.56 0.09 -13.50 16 16 C -0.15 -2.06 4.37 -27.88 -0.12 -2.18 16 17 C 0.14 2.00 4.96 -4.04 -0.02 1.98 16 18 N -0.73 -8.12 5.55 -63.24 -0.35 -8.48 16 19 C 0.53 6.89 7.36 -14.99 -0.11 6.78 16 20 O -0.52 -8.97 12.41 -19.71 -0.24 -9.22 16 21 C -0.20 -1.79 9.85 -39.25 -0.39 -2.18 16 22 C 0.00 0.03 9.95 -39.23 -0.39 -0.36 16 23 C 0.00 0.04 5.32 -38.40 -0.20 -0.16 16 24 C -0.18 -1.92 10.90 -38.90 -0.42 -2.35 16 25 C -0.23 -2.43 10.87 -39.90 -0.43 -2.86 16 26 C -0.01 -0.14 12.06 29.64 0.36 0.21 16 27 O -0.13 -1.84 7.81 -20.18 -0.16 -2.00 16 28 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 30 H 0.03 0.65 7.67 -51.93 -0.40 0.26 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.39 7.02 -51.93 -0.36 1.03 16 34 H 0.05 0.65 6.44 -51.92 -0.33 0.32 16 35 H 0.09 1.06 7.40 -51.93 -0.38 0.68 16 36 H 0.09 1.01 8.11 -51.93 -0.42 0.59 16 37 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 38 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 39 H 0.40 2.92 8.43 -40.82 -0.34 2.58 16 40 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 41 H 0.15 0.67 8.06 -52.48 -0.42 0.24 16 42 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 43 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 44 H 0.20 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 369.91 15.07 5.57 5.57 Total: -1.00 -36.25 369.91 -7.69 -43.94 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.24 Total: 3.77 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -1.48 Total: 1.32 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: -0.21 Total: -45.85 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.32 Total: -24.72 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.25 -7.69 -43.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492126307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.386 kcal (2) G-P(sol) polarization free energy of solvation -36.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds