Wall clock time and date at job start Tue Mar 31 2020 13:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47000 * 2 1 4 4 C 1.50694 * 109.47090 * 239.99968 * 2 1 3 5 5 H 1.07999 * 119.99886 * 239.99483 * 4 2 1 6 6 C 1.37880 * 120.00202 * 60.00504 * 4 2 1 7 7 N 1.31513 * 119.99851 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00076 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47133 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47419 * 119.99375 * 8 6 4 11 11 H 1.48502 * 109.46885 * 239.99568 * 8 6 4 12 12 N 1.46508 * 109.46958 * 119.99910 * 2 1 3 13 13 C 1.46499 * 119.99679 * 60.00022 * 12 2 1 14 14 C 1.34772 * 119.99665 * 240.00010 * 12 2 1 15 15 O 1.21279 * 120.00335 * 0.02562 * 14 12 2 16 16 C 1.50702 * 119.99867 * 180.02562 * 14 12 2 17 17 C 1.52995 * 109.47279 * 180.02562 * 16 14 12 18 18 N 1.46502 * 109.47041 * 180.02562 * 17 16 14 19 19 C 1.34776 * 119.99814 * 180.02562 * 18 17 16 20 20 O 1.21773 * 120.00237 * 359.97438 * 19 18 17 21 21 C 1.41557 * 119.99762 * 180.27633 * 19 18 17 22 22 C 1.35626 * 119.99616 * 186.06298 * 21 19 18 23 23 C 1.41600 * 120.00628 * 8.85373 * 22 21 19 24 24 C 1.37955 * 126.10479 * 219.80683 * 23 22 21 25 25 C 1.40316 * 106.52697 * 179.84863 * 24 23 22 26 26 C 1.35159 * 107.20837 * 0.40349 * 25 24 23 27 27 O 1.34026 * 109.03199 * 359.74473 * 26 25 24 28 28 H 1.08997 * 109.46865 * 300.00068 * 1 2 3 29 29 H 1.09001 * 109.46978 * 59.99770 * 1 2 3 30 30 H 1.08996 * 109.47000 * 179.97438 * 1 2 3 31 31 H 0.96995 * 120.00121 * 180.02562 * 7 6 4 32 32 H 1.08993 * 109.47331 * 269.99597 * 13 12 2 33 33 H 1.08998 * 109.47112 * 30.00152 * 13 12 2 34 34 H 1.09007 * 109.46705 * 150.00003 * 13 12 2 35 35 H 1.08994 * 109.47217 * 59.99722 * 16 14 12 36 36 H 1.09005 * 109.46752 * 300.00489 * 16 14 12 37 37 H 1.08999 * 109.47494 * 60.00061 * 17 16 14 38 38 H 1.09002 * 109.47125 * 299.99402 * 17 16 14 39 39 H 0.96997 * 120.00012 * 359.97438 * 18 17 16 40 40 H 1.08002 * 120.00189 * 6.05624 * 21 19 18 41 41 H 1.08012 * 119.99485 * 188.85202 * 22 21 19 42 42 H 1.07994 * 126.73651 * 359.95911 * 24 23 22 43 43 H 1.08004 * 126.39835 * 180.15015 * 25 24 23 44 44 H 1.07997 * 125.48576 * 179.72054 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6994 -0.2393 -2.4827 7 7 0.9430 0.8297 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 3.1464 -2.2870 -3.6037 10 1 1.1663 -1.5867 -4.8160 11 1 3.1467 -0.1873 -4.8164 12 7 2.0184 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0834 15 8 3.0858 1.1257 1.8917 16 6 3.2960 -0.7461 3.3136 17 6 4.1453 0.2157 4.1468 18 7 4.6346 -0.4752 5.3424 19 6 5.4087 0.1801 6.2300 20 8 5.7018 1.3463 6.0380 21 6 5.8862 -0.4893 7.3823 22 6 6.5608 0.1999 8.3360 23 6 6.6263 1.6131 8.2755 24 6 7.7290 2.3890 8.5676 25 6 7.3419 3.7231 8.3699 26 6 6.0468 3.7106 7.9833 27 8 5.6196 2.4415 7.9274 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.7084 1.1609 -3.4844 32 1 0.7376 -2.1444 1.9993 33 1 1.5295 -2.5968 0.4708 34 1 2.4629 -2.5819 1.9864 35 1 3.9017 -1.6022 3.0167 36 1 2.4483 -1.0891 3.9069 37 1 3.5393 1.0716 4.4438 38 1 4.9930 0.5590 3.5536 39 1 4.4008 -1.4040 5.4955 40 1 5.7133 -1.5486 7.5020 41 1 7.0480 -0.3294 9.1416 42 1 8.7000 2.0382 8.8842 43 1 7.9617 4.5971 8.5058 44 1 5.4519 4.5829 7.7563 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492126307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:16 Heat of formation + Delta-G solvation = -53.737487 kcal Electronic energy + Delta-G solvation = -26132.879228 eV Core-core repulsion = 22245.058791 eV Total energy + Delta-G solvation = -3887.820436 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.29464 -41.05207 -40.51986 -37.28296 -36.29471 -34.96377 -34.81376 -33.72503 -32.48969 -30.97794 -29.51591 -27.53784 -27.31782 -26.08512 -24.10881 -22.56574 -22.53871 -22.07652 -20.64053 -19.77407 -18.84852 -18.52759 -18.07186 -17.43725 -17.07525 -17.02723 -16.78833 -16.46470 -15.98611 -15.94633 -15.23822 -14.98887 -14.71714 -14.50869 -14.23843 -14.01487 -13.77822 -13.69143 -13.54794 -13.40242 -13.20517 -13.13337 -12.96401 -12.74294 -12.63507 -12.62989 -12.41952 -12.19707 -12.10691 -11.18961 -11.10387 -10.99699 -10.71016 -10.66940 -10.49144 -10.07954 -9.32262 -8.88631 -8.15450 -6.32094 -0.33810 1.20832 1.39978 1.41998 1.53033 1.77800 1.79782 2.07016 2.31921 2.39693 2.54513 2.68137 3.12745 3.64780 3.88812 3.94098 4.06008 4.08696 4.16824 4.23745 4.39083 4.54767 4.60916 4.76417 4.77939 4.81934 4.85326 4.88251 4.90458 4.96131 5.06524 5.08618 5.10522 5.18216 5.40085 5.41820 5.47986 5.59908 5.67234 5.69396 6.03703 6.16131 6.30926 6.63905 6.76801 6.83943 7.31281 7.35094 7.48475 8.89274 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024400 B = 0.002197 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.284699 B =12743.015642 C =13059.796158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.258 3.742 3 H 0.004 0.996 4 C -0.535 4.535 5 H 0.064 0.936 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.967 3.033 9 H -0.262 1.262 10 H -0.274 1.274 11 H -0.288 1.288 12 N -0.600 5.600 13 C 0.077 3.923 14 C 0.492 3.508 15 O -0.611 6.611 16 C -0.128 4.128 17 C 0.148 3.852 18 N -0.709 5.709 19 C 0.522 3.478 20 O -0.576 6.576 21 C -0.207 4.207 22 C 0.007 3.993 23 C -0.020 4.020 24 C -0.191 4.191 25 C -0.234 4.234 26 C -0.042 4.042 27 O -0.162 6.162 28 H 0.018 0.982 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.264 0.736 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.043 0.957 38 H 0.041 0.959 39 H 0.421 0.579 40 H 0.186 0.814 41 H 0.202 0.798 42 H 0.174 0.826 43 H 0.166 0.834 44 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.191 -9.381 25.222 28.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.156 3.844 3 H 0.022 0.978 4 C -0.574 4.574 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.792 3.208 9 H -0.186 1.186 10 H -0.200 1.200 11 H -0.214 1.214 12 N -0.330 5.330 13 C -0.065 4.065 14 C 0.281 3.719 15 O -0.494 6.494 16 C -0.167 4.167 17 C 0.023 3.977 18 N -0.362 5.362 19 C 0.313 3.687 20 O -0.457 6.457 21 C -0.227 4.227 22 C -0.012 4.012 23 C -0.070 4.070 24 C -0.210 4.210 25 C -0.253 4.253 26 C -0.111 4.111 27 O -0.056 6.056 28 H 0.037 0.963 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.260 0.740 40 H 0.203 0.797 41 H 0.219 0.781 42 H 0.191 0.809 43 H 0.184 0.816 44 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 9.120 -8.016 24.728 27.548 hybrid contribution 0.050 0.263 -1.465 1.489 sum 9.170 -7.753 23.263 26.180 Atomic orbital electron populations 1.21853 0.97103 1.00188 0.99792 1.18538 0.91685 0.92179 0.82042 0.97797 1.21615 1.31705 1.13022 0.91020 0.91760 1.25790 0.95150 0.95683 1.02219 1.70041 1.37453 1.24038 1.24335 0.85378 0.78190 0.78481 0.78783 1.18595 1.19960 1.21431 1.48253 1.48888 1.13673 1.22232 1.21928 1.01688 0.80105 1.02809 1.21246 0.78418 0.86703 0.85524 1.90666 1.60249 1.20113 1.78355 1.21734 1.02433 0.99366 0.93196 1.20614 0.96871 0.94562 0.85658 1.45700 1.51691 1.16450 1.22393 1.17963 0.78863 0.86565 0.85285 1.90898 1.58573 1.18576 1.77682 1.22475 1.03140 1.03461 0.93635 1.21264 0.94258 0.87456 0.98265 1.20393 0.88561 0.92918 1.05096 1.22559 0.99904 0.92746 1.05821 1.22006 0.96106 0.98976 1.08234 1.24712 0.97204 0.85695 1.03519 1.84248 1.39077 1.16735 1.65580 0.96272 0.91627 0.93189 0.92711 0.91380 0.91478 0.88287 0.85140 0.84898 0.93840 0.94071 0.74048 0.79657 0.78124 0.80899 0.81625 0.76965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.35 8.97 71.98 0.65 -5.70 16 2 C 0.26 13.54 2.64 44.24 0.12 13.65 16 3 H 0.00 0.26 6.90 -2.39 -0.02 0.24 16 4 C -0.54 -29.05 7.99 25.60 0.20 -28.85 16 5 H 0.06 3.35 7.33 -2.91 -0.02 3.33 16 6 C 0.01 0.60 5.30 84.66 0.45 1.05 16 7 N -0.92 -53.80 11.32 21.45 0.24 -53.56 16 8 Si 0.97 43.18 29.54 68.60 2.03 45.20 16 9 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 12 N -0.60 -24.62 2.75 -826.79 -2.28 -26.89 16 13 C 0.08 2.16 9.24 127.77 1.18 3.34 16 14 C 0.49 19.84 7.67 87.66 0.67 20.51 16 15 O -0.61 -32.04 15.31 -3.03 -0.05 -32.09 16 16 C -0.13 -3.11 4.37 29.85 0.13 -2.98 16 17 C 0.15 4.32 4.96 86.38 0.43 4.75 16 18 N -0.71 -14.36 5.55 -472.19 -2.62 -16.98 16 19 C 0.52 12.90 7.36 85.06 0.63 13.52 16 20 O -0.58 -20.47 12.41 19.16 0.24 -20.23 16 21 C -0.21 -2.97 9.85 22.48 0.22 -2.74 16 22 C 0.01 0.10 9.95 22.49 0.22 0.32 16 23 C -0.02 -0.46 5.32 23.03 0.12 -0.33 16 24 C -0.19 -3.91 10.90 22.71 0.25 -3.67 16 25 C -0.23 -5.02 10.87 22.07 0.24 -4.78 16 26 C -0.04 -1.02 12.06 67.11 0.81 -0.21 16 27 O -0.16 -4.68 7.81 17.48 0.14 -4.55 16 28 H 0.02 0.84 8.14 -2.39 -0.02 0.83 16 29 H 0.06 3.56 6.07 -2.39 -0.01 3.55 16 30 H 0.05 2.16 7.67 -2.39 -0.02 2.15 16 31 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 2.11 7.02 -2.39 -0.02 2.09 16 34 H 0.10 1.88 6.44 -2.38 -0.02 1.86 16 35 H 0.13 2.30 7.40 -2.39 -0.02 2.28 16 36 H 0.13 2.25 8.11 -2.38 -0.02 2.23 16 37 H 0.04 1.54 8.10 -2.39 -0.02 1.53 16 38 H 0.04 1.48 8.10 -2.39 -0.02 1.46 16 39 H 0.42 4.35 8.43 -92.71 -0.78 3.57 16 40 H 0.19 0.74 8.06 -2.91 -0.02 0.72 16 41 H 0.20 0.79 8.06 -2.90 -0.02 0.77 16 42 H 0.17 2.40 8.06 -2.91 -0.02 2.37 16 43 H 0.17 2.65 8.06 -2.91 -0.02 2.62 16 44 H 0.21 3.95 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -88.32 369.91 4.26 -84.06 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.23 Total: 17.14 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 6.32 Total: 7.88 kcal Atomic # 7 Polarization: -92.78 SS G_CDS: -4.65 Total: -97.43 kcal Atomic # 8 Polarization: -57.19 SS G_CDS: 0.33 Total: -56.86 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -88.32 4.26 -84.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492126307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.324 kcal (2) G-P(sol) polarization free energy of solvation -88.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds