Wall clock time and date at job start Tue Mar 31 2020 13:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 5 5 O 1.21281 * 119.99736 * 240.00187 * 4 2 1 6 6 N 1.34779 * 120.00201 * 59.99469 * 4 2 1 7 7 C 1.46503 * 119.99606 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.46575 * 179.97438 * 7 6 4 9 9 C 1.52996 * 109.47518 * 300.00138 * 8 7 6 10 10 C 1.53002 * 109.47233 * 60.00265 * 8 7 6 11 11 C 1.50698 * 109.47170 * 179.97438 * 8 7 6 12 12 H 1.08003 * 120.00057 * 0.02562 * 11 8 7 13 13 C 1.37874 * 120.00568 * 180.02562 * 11 8 7 14 14 N 1.31519 * 119.99776 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 120.00473 * 180.02562 * 13 11 8 16 16 H 1.48498 * 109.47163 * 359.97438 * 15 13 11 17 17 H 1.48507 * 109.47309 * 119.99789 * 15 13 11 18 18 H 1.48504 * 109.47233 * 239.99984 * 15 13 11 19 19 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 20 20 C 1.38261 * 119.99617 * 59.73360 * 19 2 1 21 21 C 1.38217 * 119.99597 * 179.76621 * 20 19 2 22 22 C 1.38253 * 120.00209 * 0.50098 * 21 20 19 23 23 C 1.38213 * 119.99849 * 359.75054 * 22 21 20 24 24 N 1.48016 * 120.00257 * 179.97438 * 23 22 21 25 25 O 1.21798 * 120.00564 * 180.02562 * 24 23 22 26 26 O 1.21806 * 119.99774 * 0.02562 * 24 23 22 27 27 C 1.38207 * 120.00269 * 240.00231 * 19 2 1 28 28 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 31 31 H 0.96991 * 119.99747 * 0.02562 * 6 4 2 32 32 H 1.08992 * 109.47080 * 299.99586 * 7 6 4 33 33 H 1.09001 * 109.47138 * 60.00172 * 7 6 4 34 34 H 1.09000 * 109.47054 * 59.99987 * 9 8 7 35 35 H 1.09004 * 109.47298 * 180.02562 * 9 8 7 36 36 H 1.09001 * 109.46993 * 299.99696 * 9 8 7 37 37 H 1.09002 * 109.47070 * 59.99626 * 10 8 7 38 38 H 1.08996 * 109.47407 * 180.02562 * 10 8 7 39 39 H 1.09000 * 109.46986 * 299.99797 * 10 8 7 40 40 H 0.96998 * 120.00187 * 180.02562 * 14 13 11 41 41 H 1.07993 * 120.00099 * 359.97438 * 20 19 2 42 42 H 1.07997 * 119.99915 * 180.22611 * 21 20 19 43 43 H 1.07997 * 120.00291 * 179.72468 * 22 21 20 44 44 H 1.07995 * 119.99985 * 0.02562 * 27 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 2.1947 -0.9407 -3.6508 8 6 1.6842 -0.2197 -4.9000 9 6 0.1542 -0.2197 -4.8994 10 6 2.1942 1.2228 -4.9005 11 6 2.1866 -0.9299 -6.1305 12 1 2.8075 -1.8081 -6.0315 13 6 1.8536 -0.4589 -7.3827 14 7 1.0978 0.6107 -7.5034 15 14 2.4757 -1.3397 -8.9080 16 1 3.3009 -2.5063 -8.5039 17 1 1.3205 -1.8060 -9.7162 18 1 3.3010 -0.4066 -9.7165 19 6 2.0324 -0.7104 1.2304 20 6 1.6938 -2.0324 1.4520 21 6 2.1586 -2.6854 2.5780 22 6 2.9534 -2.0136 3.4881 23 6 3.2875 -0.6904 3.2693 24 7 4.1380 0.0291 4.2438 25 8 4.4322 1.1953 4.0513 26 8 4.5438 -0.5450 5.2385 27 6 2.8270 -0.0387 2.1402 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.1494 0.5390 -2.5435 32 1 3.2846 -0.9410 -3.6510 33 1 1.8310 -1.9682 -3.6506 34 1 -0.2088 0.2943 -4.0094 35 1 -0.2094 0.2936 -5.7897 36 1 -0.2091 -1.2474 -4.8992 37 1 3.2842 1.2228 -4.9009 38 1 1.8301 1.7366 -5.7902 39 1 1.8312 1.7368 -4.0105 40 1 0.8632 0.9420 -8.3843 41 1 1.0691 -2.5559 0.7435 42 1 1.8971 -3.7192 2.7493 43 1 3.3128 -2.5225 4.3702 44 1 3.0875 0.9953 1.9696 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562657812.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:03 Heat of formation + Delta-G solvation = -29.182824 kcal Electronic energy + Delta-G solvation = -26650.006206 eV Core-core repulsion = 22763.250539 eV Total energy + Delta-G solvation = -3886.755666 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.33651 -40.50674 -38.99691 -36.72359 -36.52788 -34.58394 -33.41722 -32.10862 -31.08023 -30.00089 -26.75119 -25.95907 -25.82886 -25.32836 -24.50306 -22.96543 -22.12870 -20.26727 -19.09765 -18.83872 -18.63624 -17.68131 -17.15615 -16.83811 -15.95852 -15.87502 -15.51198 -14.93614 -14.73283 -14.62731 -13.97893 -13.75585 -13.46554 -13.03834 -12.96809 -12.72123 -12.48285 -12.42820 -12.28456 -11.92032 -11.73369 -11.48684 -11.43356 -11.29819 -11.29106 -11.27848 -10.95305 -10.73493 -10.48932 -10.28133 -9.83613 -9.74193 -9.70617 -9.52298 -9.28430 -8.87261 -8.59111 -8.42975 -6.10215 -4.20506 -0.32659 0.64969 1.18936 1.23167 2.79931 2.98221 3.21613 3.30674 3.34585 3.56257 3.95698 4.16210 4.33270 4.43074 4.61462 4.61609 4.67650 4.83964 4.90882 5.08700 5.16953 5.27249 5.37363 5.46031 5.48847 5.69267 5.82435 5.90622 6.01160 6.10882 6.20421 6.28998 6.39559 6.64250 6.71225 6.81116 6.87599 6.91015 7.24807 7.45773 7.47943 7.61341 7.86878 7.91585 8.04770 8.28883 8.48544 8.80343 9.45973 10.91250 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025895 B = 0.002440 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.050687 B =11474.145185 C =11513.910653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.077 4.077 3 H 0.110 0.890 4 C 0.508 3.492 5 O -0.546 6.546 6 N -0.711 5.711 7 C 0.132 3.868 8 C 0.056 3.944 9 C -0.131 4.131 10 C -0.132 4.132 11 C -0.507 4.507 12 H 0.058 0.942 13 C 0.066 3.934 14 N -0.885 5.885 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.057 4.057 20 C -0.030 4.030 21 C -0.118 4.118 22 C -0.057 4.057 23 C -0.048 4.048 24 N 0.032 4.968 25 O -0.163 6.163 26 O -0.166 6.166 27 C -0.049 4.049 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.399 0.601 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.006 0.994 35 H 0.086 0.914 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.086 0.914 39 H 0.006 0.994 40 H 0.260 0.740 41 H 0.142 0.858 42 H 0.147 0.853 43 H 0.151 0.849 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.470 -1.245 18.217 18.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.098 4.098 3 H 0.128 0.872 4 C 0.293 3.707 5 O -0.425 6.425 6 N -0.361 5.361 7 C 0.009 3.991 8 C 0.055 3.945 9 C -0.189 4.189 10 C -0.190 4.190 11 C -0.545 4.545 12 H 0.076 0.924 13 C -0.135 4.135 14 N -0.524 5.524 15 Si 0.721 3.279 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.058 4.058 20 C -0.049 4.049 21 C -0.137 4.137 22 C -0.076 4.076 23 C -0.131 4.131 24 N 0.550 4.450 25 O -0.379 6.379 26 O -0.381 6.381 27 C -0.068 4.068 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.235 0.765 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.025 0.975 35 H 0.105 0.895 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.105 0.895 39 H 0.025 0.975 40 H 0.070 0.930 41 H 0.160 0.840 42 H 0.165 0.835 43 H 0.169 0.831 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.450 -2.186 17.646 18.112 hybrid contribution 0.393 0.152 -0.721 0.835 sum -3.058 -2.034 16.924 17.318 Atomic orbital electron populations 1.21832 0.91320 1.03401 1.03484 1.20383 0.98239 1.00669 0.90554 0.87191 1.20196 0.80956 0.84946 0.84629 1.90700 1.38365 1.26617 1.86771 1.46298 1.52252 1.31701 1.05843 1.21760 0.98230 0.95783 0.83291 1.18359 0.92795 0.92766 0.90535 1.21836 0.97735 0.99178 1.00117 1.21845 0.98655 0.98325 1.00132 1.21008 1.31525 1.12143 0.89858 0.92405 1.24878 0.94812 0.94902 0.98898 1.69804 1.36656 1.22720 1.23227 0.86517 0.78670 0.79770 0.82949 1.19761 1.21018 1.21009 1.19350 0.97209 0.94389 0.94864 1.21488 0.94931 0.93299 0.95138 1.21193 0.97824 1.00911 0.93737 1.21047 0.95143 0.91205 1.00251 1.21004 1.03740 0.94424 0.93942 1.43632 0.99415 1.00930 1.01012 1.94542 1.61176 1.00420 1.81725 1.94523 1.56078 1.69362 1.18138 1.20887 0.93883 1.01406 0.90646 0.90750 0.91598 0.91181 0.76542 0.92637 0.92613 0.97531 0.89536 0.95424 0.95398 0.89504 0.97539 0.92990 0.84049 0.83485 0.83118 0.83021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.90 37.16 0.33 -0.80 16 2 C -0.08 -0.78 2.90 -92.92 -0.27 -1.05 16 3 H 0.11 0.93 7.88 -51.93 -0.41 0.52 16 4 C 0.51 7.44 7.03 -10.99 -0.08 7.36 16 5 O -0.55 -9.94 15.13 5.56 0.08 -9.86 16 6 N -0.71 -11.06 4.85 -60.29 -0.29 -11.36 16 7 C 0.13 2.58 4.50 -4.04 -0.02 2.56 16 8 C 0.06 1.22 0.50 -155.66 -0.08 1.15 16 9 C -0.13 -2.75 8.08 37.16 0.30 -2.45 16 10 C -0.13 -2.82 8.08 37.16 0.30 -2.52 16 11 C -0.51 -12.77 8.01 -34.44 -0.28 -13.05 16 12 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 13 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 14 N -0.89 -22.85 9.35 55.43 0.52 -22.33 16 15 Si 0.89 20.18 29.54 -169.99 -5.02 15.16 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 C -0.06 -0.59 4.39 -104.63 -0.46 -1.05 16 20 C -0.03 -0.29 7.94 -39.58 -0.31 -0.61 16 21 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 22 C -0.06 -0.53 9.56 -39.59 -0.38 -0.91 16 23 C -0.05 -0.54 6.85 -79.95 -0.55 -1.09 16 24 N 0.03 0.41 4.45 33.96 0.15 0.57 16 25 O -0.16 -2.27 18.45 -29.46 -0.54 -2.81 16 26 O -0.17 -2.24 18.45 -29.46 -0.54 -2.78 16 27 C -0.05 -0.52 9.18 -39.58 -0.36 -0.88 16 28 H 0.07 0.58 7.56 -51.93 -0.39 0.18 16 29 H 0.06 0.53 7.37 -51.93 -0.38 0.14 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.40 5.52 5.58 -40.82 -0.23 5.29 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 35 H 0.09 2.05 6.07 -51.93 -0.32 1.73 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 39 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 40 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 41 H 0.14 1.30 7.52 -52.49 -0.39 0.91 16 42 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.15 1.14 7.61 -52.49 -0.40 0.74 16 44 H 0.15 1.43 7.50 -52.49 -0.39 1.03 16 LS Contribution 364.37 15.07 5.49 5.49 Total: -1.00 -29.13 364.37 -8.52 -37.65 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.02 Total: 3.38 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -2.34 Total: -13.11 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.38 Total: -33.12 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -1.00 Total: -15.45 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.13 -8.52 -37.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562657812.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.468 kcal (2) G-P(sol) polarization free energy of solvation -29.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds