Wall clock time and date at job start Tue Mar 31 2020 13:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 5 5 O 1.21281 * 119.99736 * 240.00187 * 4 2 1 6 6 N 1.34779 * 120.00201 * 59.99469 * 4 2 1 7 7 C 1.46503 * 119.99606 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.46575 * 179.97438 * 7 6 4 9 9 C 1.52996 * 109.47518 * 300.00138 * 8 7 6 10 10 C 1.53002 * 109.47233 * 60.00265 * 8 7 6 11 11 C 1.50698 * 109.47170 * 179.97438 * 8 7 6 12 12 H 1.08003 * 120.00057 * 0.02562 * 11 8 7 13 13 C 1.37874 * 120.00568 * 180.02562 * 11 8 7 14 14 N 1.31519 * 119.99776 * 0.02562 * 13 11 8 15 15 Si 1.86798 * 120.00473 * 180.02562 * 13 11 8 16 16 H 1.48498 * 109.47163 * 359.97438 * 15 13 11 17 17 H 1.48507 * 109.47309 * 119.99789 * 15 13 11 18 18 H 1.48504 * 109.47233 * 239.99984 * 15 13 11 19 19 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 20 20 C 1.38261 * 119.99617 * 59.73360 * 19 2 1 21 21 C 1.38217 * 119.99597 * 179.76621 * 20 19 2 22 22 C 1.38253 * 120.00209 * 0.50098 * 21 20 19 23 23 C 1.38213 * 119.99849 * 359.75054 * 22 21 20 24 24 N 1.48016 * 120.00257 * 179.97438 * 23 22 21 25 25 O 1.21798 * 120.00564 * 180.02562 * 24 23 22 26 26 O 1.21806 * 119.99774 * 0.02562 * 24 23 22 27 27 C 1.38207 * 120.00269 * 240.00231 * 19 2 1 28 28 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 31 31 H 0.96991 * 119.99747 * 0.02562 * 6 4 2 32 32 H 1.08992 * 109.47080 * 299.99586 * 7 6 4 33 33 H 1.09001 * 109.47138 * 60.00172 * 7 6 4 34 34 H 1.09000 * 109.47054 * 59.99987 * 9 8 7 35 35 H 1.09004 * 109.47298 * 180.02562 * 9 8 7 36 36 H 1.09001 * 109.46993 * 299.99696 * 9 8 7 37 37 H 1.09002 * 109.47070 * 59.99626 * 10 8 7 38 38 H 1.08996 * 109.47407 * 180.02562 * 10 8 7 39 39 H 1.09000 * 109.46986 * 299.99797 * 10 8 7 40 40 H 0.96998 * 120.00187 * 180.02562 * 14 13 11 41 41 H 1.07993 * 120.00099 * 359.97438 * 20 19 2 42 42 H 1.07997 * 119.99915 * 180.22611 * 21 20 19 43 43 H 1.07997 * 120.00291 * 179.72468 * 22 21 20 44 44 H 1.07995 * 119.99985 * 0.02562 * 27 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7068 -0.2498 -2.4546 7 6 2.1947 -0.9407 -3.6508 8 6 1.6842 -0.2197 -4.9000 9 6 0.1542 -0.2197 -4.8994 10 6 2.1942 1.2228 -4.9005 11 6 2.1866 -0.9299 -6.1305 12 1 2.8075 -1.8081 -6.0315 13 6 1.8536 -0.4589 -7.3827 14 7 1.0978 0.6107 -7.5034 15 14 2.4757 -1.3397 -8.9080 16 1 3.3009 -2.5063 -8.5039 17 1 1.3205 -1.8060 -9.7162 18 1 3.3010 -0.4066 -9.7165 19 6 2.0324 -0.7104 1.2304 20 6 1.6938 -2.0324 1.4520 21 6 2.1586 -2.6854 2.5780 22 6 2.9534 -2.0136 3.4881 23 6 3.2875 -0.6904 3.2693 24 7 4.1380 0.0291 4.2438 25 8 4.4322 1.1953 4.0513 26 8 4.5438 -0.5450 5.2385 27 6 2.8270 -0.0387 2.1402 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.1494 0.5390 -2.5435 32 1 3.2846 -0.9410 -3.6510 33 1 1.8310 -1.9682 -3.6506 34 1 -0.2088 0.2943 -4.0094 35 1 -0.2094 0.2936 -5.7897 36 1 -0.2091 -1.2474 -4.8992 37 1 3.2842 1.2228 -4.9009 38 1 1.8301 1.7366 -5.7902 39 1 1.8312 1.7368 -4.0105 40 1 0.8632 0.9420 -8.3843 41 1 1.0691 -2.5559 0.7435 42 1 1.8971 -3.7192 2.7493 43 1 3.3128 -2.5225 4.3702 44 1 3.0875 0.9953 1.9696 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562657812.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:02 Heat of formation + Delta-G solvation = -43.823483 kcal Electronic energy + Delta-G solvation = -26650.641072 eV Core-core repulsion = 22763.250539 eV Total energy + Delta-G solvation = -3887.390533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.28468 -41.48939 -40.04780 -38.12791 -37.71190 -35.48782 -34.95528 -32.91901 -32.68966 -30.86644 -27.65982 -27.55405 -27.49659 -26.93508 -25.52360 -23.73841 -23.13240 -21.38089 -20.62948 -19.89153 -19.69700 -18.64245 -18.28158 -17.70741 -17.57651 -16.92138 -16.68635 -16.46337 -16.02774 -15.51907 -15.00887 -14.83803 -14.73323 -14.53068 -14.15295 -13.96480 -13.46884 -13.30519 -13.20450 -13.17332 -13.07141 -12.76784 -12.72644 -12.61446 -12.58429 -12.33586 -12.25978 -12.23114 -12.15159 -12.12035 -11.47855 -11.26280 -10.83115 -10.67267 -10.54274 -10.40459 -10.19332 -9.93806 -8.03442 -6.18747 -1.23515 -0.07651 0.30731 0.35017 1.39861 1.44963 1.53260 1.65092 2.12912 2.41284 2.53839 3.17053 3.20579 3.45478 3.62718 3.86959 3.89434 3.95484 3.98598 4.16039 4.34280 4.43765 4.52282 4.60937 4.69237 4.72832 4.82585 4.85541 4.98232 5.01455 5.06662 5.09686 5.11858 5.19927 5.20431 5.28261 5.37256 5.49432 5.59271 5.67376 5.68414 6.16803 6.22784 6.43625 6.45909 6.65325 6.86277 7.29087 7.49356 8.95315 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025895 B = 0.002440 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.050687 B =11474.145185 C =11513.910653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.066 4.066 3 H 0.131 0.869 4 C 0.509 3.491 5 O -0.583 6.583 6 N -0.706 5.706 7 C 0.149 3.851 8 C 0.052 3.948 9 C -0.121 4.121 10 C -0.123 4.123 11 C -0.527 4.527 12 H 0.043 0.957 13 C 0.029 3.971 14 N -0.898 5.898 15 Si 0.941 3.059 16 H -0.276 1.276 17 H -0.281 1.281 18 H -0.283 1.283 19 C -0.067 4.067 20 C -0.036 4.036 21 C -0.110 4.110 22 C -0.055 4.055 23 C -0.066 4.066 24 N 0.033 4.967 25 O -0.189 6.189 26 O -0.174 6.174 27 C -0.053 4.053 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.410 0.590 32 H 0.035 0.965 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.060 0.940 36 H 0.019 0.981 37 H 0.015 0.985 38 H 0.061 0.939 39 H 0.040 0.960 40 H 0.260 0.740 41 H 0.146 0.854 42 H 0.179 0.821 43 H 0.167 0.833 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.569 -1.431 19.375 19.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.087 4.087 3 H 0.149 0.851 4 C 0.296 3.704 5 O -0.464 6.464 6 N -0.357 5.357 7 C 0.025 3.975 8 C 0.051 3.949 9 C -0.179 4.179 10 C -0.181 4.181 11 C -0.566 4.566 12 H 0.061 0.939 13 C -0.171 4.171 14 N -0.537 5.537 15 Si 0.769 3.231 16 H -0.201 1.201 17 H -0.207 1.207 18 H -0.209 1.209 19 C -0.068 4.068 20 C -0.054 4.054 21 C -0.128 4.128 22 C -0.074 4.074 23 C -0.149 4.149 24 N 0.547 4.453 25 O -0.400 6.400 26 O -0.389 6.389 27 C -0.072 4.072 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.248 0.752 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.035 0.965 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.164 0.836 42 H 0.197 0.803 43 H 0.185 0.815 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.557 -2.319 18.815 19.497 hybrid contribution 0.726 0.124 -1.066 1.295 sum -3.831 -2.195 17.749 18.290 Atomic orbital electron populations 1.21876 0.89286 1.03844 1.04826 1.20366 0.99733 1.00874 0.87712 0.85078 1.20958 0.79788 0.84380 0.85288 1.90685 1.39916 1.28429 1.87329 1.46096 1.52580 1.31913 1.05149 1.21238 0.96821 0.95163 0.84236 1.18347 0.93405 0.92873 0.90283 1.21670 0.96875 0.98790 1.00546 1.21695 0.97835 0.98016 1.00532 1.21313 1.31535 1.12082 0.91678 0.93892 1.25417 0.95194 0.95583 1.00880 1.69906 1.37052 1.23241 1.23509 0.85764 0.78143 0.78749 0.80478 1.20080 1.20699 1.20916 1.19419 0.97621 0.94862 0.94944 1.21729 0.94814 0.93228 0.95645 1.21541 0.96528 1.02144 0.92569 1.21353 0.94649 0.90437 1.00936 1.21214 1.04429 0.95231 0.94016 1.43916 0.99348 1.00843 1.01161 1.94529 1.62216 1.01155 1.82111 1.94499 1.56410 1.69250 1.18762 1.20989 0.93785 1.01900 0.90553 0.90208 0.91668 0.89052 0.75238 0.94703 0.94068 0.93980 0.92115 0.96165 0.96533 0.91991 0.94141 0.93063 0.83606 0.80319 0.81505 0.82366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.90 71.98 0.64 -1.12 16 2 C -0.07 -1.15 2.90 -12.29 -0.04 -1.19 16 3 H 0.13 1.78 7.88 -2.39 -0.02 1.76 16 4 C 0.51 13.99 7.03 87.66 0.62 14.61 16 5 O -0.58 -20.68 15.13 -3.03 -0.05 -20.73 16 6 N -0.71 -20.71 4.85 -463.06 -2.25 -22.96 16 7 C 0.15 5.82 4.50 86.38 0.39 6.21 16 8 C 0.05 2.23 0.50 -52.93 -0.03 2.20 16 9 C -0.12 -4.96 8.08 71.98 0.58 -4.38 16 10 C -0.12 -5.16 8.08 71.98 0.58 -4.58 16 11 C -0.53 -26.90 8.01 25.60 0.21 -26.70 16 12 H 0.04 2.26 7.74 -2.91 -0.02 2.23 16 13 C 0.03 1.49 5.15 84.65 0.44 1.92 16 14 N -0.90 -46.49 9.35 21.45 0.20 -46.29 16 15 Si 0.94 41.63 29.54 68.60 2.03 43.66 16 16 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 C -0.07 -1.25 4.39 -19.87 -0.09 -1.34 16 20 C -0.04 -0.61 7.94 22.27 0.18 -0.44 16 21 C -0.11 -1.49 10.05 22.27 0.22 -1.27 16 22 C -0.05 -0.89 9.56 22.27 0.21 -0.68 16 23 C -0.07 -1.39 6.85 36.37 0.25 -1.14 16 24 N 0.03 0.85 4.45 -46.46 -0.21 0.64 16 25 O -0.19 -5.26 18.45 18.89 0.35 -4.91 16 26 O -0.17 -4.59 18.45 18.88 0.35 -4.24 16 27 C -0.05 -1.04 9.18 22.27 0.20 -0.83 16 28 H 0.08 0.93 7.56 -2.39 -0.02 0.92 16 29 H 0.06 0.84 7.37 -2.39 -0.02 0.82 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.41 10.13 5.58 -92.71 -0.52 9.61 16 32 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 35 H 0.06 2.83 6.07 -2.38 -0.01 2.82 16 36 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.06 2.94 6.07 -2.39 -0.01 2.92 16 39 H 0.04 1.37 6.86 -2.39 -0.02 1.36 16 40 H 0.26 12.97 8.31 -92.71 -0.77 12.20 16 41 H 0.15 2.35 7.52 -2.91 -0.02 2.33 16 42 H 0.18 1.25 8.06 -2.91 -0.02 1.22 16 43 H 0.17 2.12 7.61 -2.91 -0.02 2.10 16 44 H 0.16 2.76 7.50 -2.91 -0.02 2.74 16 Total: -1.00 -63.79 364.37 5.30 -58.49 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.51 Total: 15.06 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: 4.37 Total: -18.72 kcal Atomic # 7 Polarization: -66.36 SS G_CDS: -2.25 Total: -68.61 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: 0.65 Total: -29.88 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -63.79 5.30 -58.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562657812.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.668 kcal (2) G-P(sol) polarization free energy of solvation -63.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds