Wall clock time and date at job start Tue Mar 31 2020 13:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47187 * 2 1 4 4 N 1.46501 * 109.47240 * 120.00175 * 2 1 3 5 5 C 1.46495 * 119.99763 * 116.01566 * 4 2 1 6 6 C 1.50703 * 109.47525 * 84.02605 * 5 4 2 7 7 H 1.08001 * 119.99440 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00084 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00336 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99925 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46804 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47113 * 119.99633 * 10 8 6 13 13 H 1.48498 * 109.47017 * 239.99856 * 10 8 6 14 14 C 1.34774 * 119.99792 * 296.01309 * 4 2 1 15 15 O 1.21274 * 120.00378 * 5.23927 * 14 4 2 16 16 C 1.50698 * 119.99837 * 185.23976 * 14 4 2 17 17 H 1.09004 * 109.47000 * 40.10234 * 16 14 4 18 18 C 1.52999 * 109.47347 * 280.10015 * 16 14 4 19 19 C 1.50696 * 109.47183 * 160.09826 * 16 14 4 20 20 C 1.38258 * 119.99922 * 60.00201 * 19 16 14 21 21 C 1.38213 * 120.00009 * 179.97438 * 20 19 16 22 22 C 1.38258 * 120.00269 * 0.02562 * 21 20 19 23 23 C 1.38214 * 119.99696 * 0.02562 * 22 21 20 24 24 N 1.48018 * 119.99843 * 180.02562 * 23 22 21 25 25 O 1.21799 * 120.00223 * 359.97438 * 24 23 22 26 26 O 1.21806 * 120.00104 * 180.02562 * 24 23 22 27 27 C 1.38215 * 120.00191 * 239.72602 * 19 16 14 28 28 H 1.09001 * 109.47385 * 298.15577 * 1 2 3 29 29 H 1.09003 * 109.47348 * 58.15060 * 1 2 3 30 30 H 1.09000 * 109.47381 * 178.15402 * 1 2 3 31 31 H 1.09003 * 109.46855 * 240.00416 * 2 1 3 32 32 H 1.08996 * 109.47527 * 183.92046 * 3 2 1 33 33 H 1.09004 * 109.47229 * 303.92388 * 3 2 1 34 34 H 1.09001 * 109.46939 * 63.91585 * 3 2 1 35 35 H 1.09004 * 109.47083 * 204.02499 * 5 4 2 36 36 H 1.08997 * 109.47373 * 324.02328 * 5 4 2 37 37 H 0.97004 * 120.00408 * 179.97438 * 9 8 6 38 38 H 1.08997 * 109.47118 * 290.46870 * 18 16 14 39 39 H 1.09008 * 109.47074 * 50.46549 * 18 16 14 40 40 H 1.08997 * 109.47247 * 170.45931 * 18 16 14 41 41 H 1.07998 * 119.99868 * 0.02562 * 20 19 16 42 42 H 1.08004 * 119.99629 * 180.02562 * 21 20 19 43 43 H 1.07990 * 120.00118 * 180.02562 * 22 21 20 44 44 H 1.07997 * 120.00241 * 0.02562 * 27 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.7871 -1.9306 1.0634 6 6 4.2360 -1.5992 0.8140 7 1 4.5523 -0.5679 0.7595 8 6 5.1575 -2.6123 0.6556 9 7 4.7724 -3.8680 0.7225 10 14 6.9536 -2.2015 0.3472 11 1 7.1258 -0.7268 0.3172 12 1 7.7864 -2.7756 1.4343 13 1 7.3759 -2.7753 -0.9557 14 6 1.7603 -0.1852 2.4186 15 8 1.0448 0.7871 2.5342 16 6 2.3610 -0.8284 3.6419 17 1 3.3890 -1.1224 3.4302 18 6 1.5444 -2.0656 4.0207 19 6 2.3447 0.1535 4.7850 20 6 1.1440 0.6707 5.2349 21 6 1.1290 1.5709 6.2836 22 6 2.3147 1.9546 6.8824 23 6 3.5150 1.4384 6.4318 24 7 4.7844 1.8488 7.0732 25 8 4.7711 2.6417 7.9976 26 8 5.8423 1.3943 6.6758 27 6 3.5295 0.5328 5.3872 28 1 -0.3634 0.4849 0.9061 29 1 -0.3634 0.5423 -0.8730 30 1 -0.3634 -1.0271 -0.0331 31 1 1.8933 -0.5138 -0.8901 32 1 3.1277 1.4433 -0.0703 33 1 1.6204 1.9763 -0.8528 34 1 1.7351 1.9356 0.9230 35 1 2.7002 -2.5120 1.9813 36 1 2.3982 -2.5115 0.2272 37 1 5.4207 -4.5808 0.6107 38 1 0.5683 -1.7562 4.3944 39 1 1.4135 -2.6975 3.1422 40 1 2.0697 -2.6245 4.7952 41 1 0.2178 0.3707 4.7675 42 1 0.1910 1.9745 6.6354 43 1 2.3029 2.6577 7.7020 44 1 4.4670 0.1257 5.0384 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573744868.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:05 Heat of formation + Delta-G solvation = -34.519272 kcal Electronic energy + Delta-G solvation = -27840.210005 eV Core-core repulsion = 23953.222933 eV Total energy + Delta-G solvation = -3886.987072 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.29444 -41.62290 -40.14558 -37.71885 -37.08366 -35.82838 -34.74566 -33.08240 -32.76331 -30.75784 -28.92034 -28.03337 -27.61778 -25.97798 -24.67330 -23.91530 -23.56250 -22.19943 -20.34252 -19.77043 -19.08227 -18.65896 -18.63983 -17.80498 -17.46538 -17.15855 -16.45479 -16.23859 -15.81603 -15.62476 -15.22787 -14.80802 -14.57805 -14.36861 -14.09000 -14.01880 -13.71359 -13.43384 -13.29938 -13.18093 -13.07383 -12.85223 -12.76722 -12.74054 -12.63754 -12.53008 -12.34942 -12.26152 -12.16441 -12.11211 -12.06254 -11.73949 -11.55859 -10.64492 -10.53016 -10.40392 -10.07576 -9.41317 -8.22447 -6.35401 -1.22492 -0.05341 0.32719 0.35528 1.35909 1.41560 1.49279 1.73904 2.19355 2.35613 2.48690 3.08237 3.23982 3.47686 3.58831 3.85605 3.93394 3.97555 4.02417 4.14046 4.23496 4.28770 4.39866 4.42105 4.63756 4.69275 4.72654 4.80167 4.81808 4.88366 4.96953 4.99893 5.01552 5.04277 5.11369 5.12902 5.27500 5.30588 5.34891 5.42614 5.53405 5.67713 5.93143 6.05282 6.46235 6.60524 6.83559 7.30361 7.41198 8.82451 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010027 B = 0.005020 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.722044 B = 5576.039991 C = 7267.931403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.138 3.862 3 C -0.157 4.157 4 N -0.591 5.591 5 C 0.242 3.758 6 C -0.543 4.543 7 H 0.048 0.952 8 C 0.028 3.972 9 N -0.915 5.915 10 Si 0.943 3.057 11 H -0.276 1.276 12 H -0.279 1.279 13 H -0.277 1.277 14 C 0.524 3.476 15 O -0.567 6.567 16 C -0.074 4.074 17 H 0.094 0.906 18 C -0.133 4.133 19 C -0.067 4.067 20 C -0.024 4.024 21 C -0.105 4.105 22 C -0.051 4.051 23 C -0.065 4.065 24 N 0.033 4.967 25 O -0.149 6.149 26 O -0.216 6.216 27 C -0.063 4.063 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.034 0.966 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.017 0.983 37 H 0.267 0.733 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.155 0.845 42 H 0.189 0.811 43 H 0.174 0.826 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.277 7.067 7.940 15.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.035 3.965 3 C -0.215 4.215 4 N -0.321 5.321 5 C 0.121 3.879 6 C -0.582 4.582 7 H 0.066 0.934 8 C -0.172 4.172 9 N -0.554 5.554 10 Si 0.769 3.231 11 H -0.200 1.200 12 H -0.205 1.205 13 H -0.203 1.203 14 C 0.313 3.687 15 O -0.449 6.449 16 C -0.095 4.095 17 H 0.113 0.887 18 C -0.190 4.190 19 C -0.068 4.068 20 C -0.043 4.043 21 C -0.123 4.123 22 C -0.070 4.070 23 C -0.148 4.148 24 N 0.548 4.452 25 O -0.372 6.372 26 O -0.420 6.420 27 C -0.082 4.082 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.035 0.965 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.173 0.827 42 H 0.206 0.794 43 H 0.192 0.808 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.106 7.111 7.581 15.956 hybrid contribution 2.205 -0.196 -0.466 2.262 sum -9.901 6.915 7.115 14.017 Atomic orbital electron populations 1.22072 0.93819 1.01810 1.03284 1.21038 0.94970 0.93081 0.87405 1.22071 0.99919 0.96278 1.03183 1.48245 1.52512 1.26105 1.05234 1.19310 0.89273 0.81209 0.98062 1.21688 0.93980 0.92617 1.49886 0.93363 1.25488 1.02131 0.94815 0.94807 1.69974 1.35922 0.99352 1.50155 0.85737 0.81131 0.78196 0.78037 1.20037 1.20457 1.20298 1.20300 0.80319 0.83414 0.84716 1.90511 1.39637 1.28117 1.86650 1.20257 1.03031 0.95689 0.90558 0.88739 1.21798 0.99960 0.94600 1.02617 1.19447 0.92512 0.98509 0.96337 1.21766 0.98269 0.91869 0.92346 1.21626 0.98680 0.96961 0.95051 1.21409 0.89017 0.97218 0.99338 1.21181 0.83689 1.07604 1.02366 1.43929 1.03450 0.98445 0.99417 1.94444 1.94128 1.28552 1.20070 1.94578 1.20193 1.59079 1.68129 1.20930 1.00344 0.94088 0.92865 0.91734 0.90248 0.93085 0.90491 0.94694 0.90071 0.91939 0.93302 0.96475 0.92336 0.90110 0.91873 0.90485 0.82699 0.79357 0.80824 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.30 9.20 71.98 0.66 -3.64 16 2 C 0.14 4.71 3.27 44.99 0.15 4.86 16 3 C -0.16 -5.13 9.12 71.98 0.66 -4.48 16 4 N -0.59 -22.57 2.41 -802.17 -1.93 -24.50 16 5 C 0.24 10.77 4.59 85.63 0.39 11.17 16 6 C -0.54 -27.24 9.08 25.60 0.23 -27.01 16 7 H 0.05 2.51 7.81 -2.91 -0.02 2.49 16 8 C 0.03 1.46 5.46 84.65 0.46 1.92 16 9 N -0.91 -48.75 13.29 21.44 0.28 -48.47 16 10 Si 0.94 41.83 29.54 68.60 2.03 43.86 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 13 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 14 C 0.52 18.63 6.19 87.66 0.54 19.18 16 15 O -0.57 -20.13 10.80 -3.01 -0.03 -20.16 16 16 C -0.07 -2.37 2.05 -12.29 -0.03 -2.39 16 17 H 0.09 3.56 6.84 -2.39 -0.02 3.54 16 18 C -0.13 -3.54 8.71 71.98 0.63 -2.92 16 19 C -0.07 -1.87 4.60 -19.87 -0.09 -1.96 16 20 C -0.02 -0.53 7.74 22.27 0.17 -0.36 16 21 C -0.11 -1.73 10.05 22.27 0.22 -1.51 16 22 C -0.05 -1.02 9.56 22.27 0.21 -0.80 16 23 C -0.07 -1.82 6.85 36.38 0.25 -1.57 16 24 N 0.03 1.07 4.45 -46.46 -0.21 0.86 16 25 O -0.15 -4.55 18.45 18.89 0.35 -4.20 16 26 O -0.22 -7.88 18.45 18.88 0.35 -7.54 16 27 C -0.06 -1.89 9.18 22.27 0.20 -1.69 16 28 H 0.06 1.96 6.25 -2.39 -0.01 1.94 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 2.73 7.90 -2.39 -0.02 2.71 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.06 2.20 5.96 -2.39 -0.01 2.19 16 35 H 0.05 2.17 4.57 -2.39 -0.01 2.16 16 36 H 0.02 0.82 8.08 -2.39 -0.02 0.80 16 37 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 38 H 0.08 1.75 7.10 -2.39 -0.02 1.73 16 39 H 0.06 1.89 6.24 -2.38 -0.01 1.87 16 40 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.16 3.10 6.98 -2.91 -0.02 3.08 16 42 H 0.19 1.50 8.06 -2.91 -0.02 1.47 16 43 H 0.17 2.59 7.61 -2.92 -0.02 2.57 16 44 H 0.14 4.46 7.50 -2.91 -0.02 4.43 16 Total: -1.00 -60.06 364.27 6.52 -53.54 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 1.02 Total: 17.80 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 4.67 Total: -11.19 kcal Atomic # 7 Polarization: -70.25 SS G_CDS: -1.85 Total: -72.10 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: 0.66 Total: -31.90 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -60.06 6.52 -53.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573744868.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.018 kcal (2) G-P(sol) polarization free energy of solvation -60.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds