Wall clock time and date at job start Tue Mar 31 2020 12:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 115.54969 * 2 1 4 4 C 1.53002 * 117.49831 * 145.66997 * 2 1 3 5 5 C 1.52999 * 59.99973 * 107.48494 * 4 2 1 6 6 H 1.08998 * 117.50011 * 252.50757 * 5 4 2 7 7 C 1.50704 * 117.49765 * 107.48802 * 5 4 2 8 8 C 1.34512 * 125.78794 * 171.09510 * 7 5 4 9 9 C 1.41386 * 106.83583 * 179.88940 * 8 7 5 10 10 C 1.34508 * 106.84280 * 0.37291 * 9 8 7 11 11 C 1.50705 * 125.78698 * 179.79368 * 10 9 8 12 12 C 1.53001 * 109.47127 * 90.00263 * 11 10 9 13 13 C 1.50696 * 109.47253 * 179.97438 * 12 11 10 14 14 O 1.21287 * 119.99892 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00371 * 179.97438 * 13 12 11 16 16 C 1.46499 * 120.00347 * 179.97438 * 15 13 12 17 17 C 1.50695 * 109.47346 * 179.97438 * 16 15 13 18 18 O 1.21292 * 120.00240 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00330 * 180.02562 * 17 16 15 20 20 C 1.37093 * 120.00441 * 180.02562 * 19 17 16 21 21 H 1.08006 * 119.99926 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00353 * 180.02562 * 20 19 17 23 23 N 1.31418 * 119.99784 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00354 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47403 * 89.99320 * 24 22 20 26 26 H 1.48502 * 109.47393 * 209.99806 * 24 22 20 27 27 H 1.48501 * 109.46937 * 329.99723 * 24 22 20 28 28 O 1.34298 * 108.42207 * 359.76924 * 10 9 8 29 29 H 1.09001 * 109.47002 * 325.72035 * 1 2 3 30 30 H 1.08993 * 109.46955 * 85.72472 * 1 2 3 31 31 H 1.09000 * 109.47050 * 205.72301 * 1 2 3 32 32 H 1.08995 * 117.50025 * 214.97721 * 4 2 1 33 33 H 1.08998 * 117.49666 * 359.97438 * 4 2 1 34 34 H 1.07995 * 126.58489 * 0.02606 * 8 7 5 35 35 H 1.08005 * 126.57463 * 180.11864 * 9 8 7 36 36 H 1.09006 * 109.46709 * 209.99351 * 11 10 9 37 37 H 1.08994 * 109.47165 * 329.99704 * 11 10 9 38 38 H 1.09003 * 109.47072 * 299.99270 * 12 11 10 39 39 H 1.09000 * 109.47439 * 59.99267 * 12 11 10 40 40 H 0.97003 * 119.99891 * 359.97438 * 15 13 12 41 41 H 1.08997 * 109.47563 * 300.00238 * 16 15 13 42 42 H 1.09011 * 109.46723 * 60.00164 * 16 15 13 43 43 H 0.97003 * 120.00028 * 0.02562 * 19 17 16 44 44 H 0.97004 * 119.99714 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1208 0.7654 5 6 2.2364 -1.1213 -0.7646 6 1 1.6112 -1.8590 -1.2676 7 6 3.5292 -0.7817 -1.4606 8 6 3.7656 -0.8947 -2.7800 9 6 5.0964 -0.4688 -2.9956 10 6 5.5963 -0.1289 -1.7940 11 6 6.9900 0.3810 -1.5315 12 6 7.0025 1.9074 -1.6346 13 6 8.3960 2.4173 -1.3716 14 8 9.2909 1.6367 -1.1254 15 7 8.6478 3.7408 -1.4099 16 6 10.0023 4.2365 -1.1536 17 6 10.0149 5.7398 -1.2564 18 8 8.9929 6.3385 -1.5176 19 7 11.1619 6.4193 -1.0582 20 6 11.1733 7.7870 -1.1513 21 1 10.2631 8.3201 -1.3839 22 6 12.3558 8.4875 -0.9474 23 7 13.4633 7.8389 -0.6649 24 14 12.3715 10.3511 -1.0749 25 1 12.0832 10.9409 0.2571 26 1 13.7075 10.8044 -1.5384 27 1 11.3361 10.7896 -2.0449 28 8 4.6427 -0.3204 -0.8680 29 1 -0.3633 0.8492 0.5788 30 1 -0.3633 0.0766 -1.0247 31 1 -0.3633 -0.9258 0.4460 32 1 3.1716 -0.8748 1.2686 33 1 1.6112 -1.8578 1.2692 34 1 3.0713 -1.2418 -3.5308 35 1 5.6137 -0.4284 -3.9428 36 1 7.3039 0.0818 -0.5314 37 1 7.6751 -0.0386 -2.2682 38 1 6.6886 2.2067 -2.6347 39 1 6.3173 2.3270 -0.8980 40 1 7.9321 4.3651 -1.6071 41 1 10.3154 3.9378 -0.1532 42 1 10.6882 3.8165 -1.8895 43 1 11.9794 5.9406 -0.8497 44 1 14.2890 8.3279 -0.5230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588078622.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:45 Heat of formation + Delta-G solvation = -52.839535 kcal Electronic energy + Delta-G solvation = -24979.893628 eV Core-core repulsion = 21092.112129 eV Total energy + Delta-G solvation = -3887.781498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.82470 -39.66173 -38.20838 -38.09015 -34.55011 -34.11935 -33.68980 -33.00552 -31.40586 -30.07001 -28.62282 -27.43622 -25.15625 -24.08784 -22.32961 -21.93772 -21.10783 -20.18385 -20.03746 -19.56326 -18.13424 -17.52840 -16.90476 -16.23447 -15.87536 -15.58361 -15.52305 -15.11691 -14.76120 -14.54032 -14.38009 -14.01158 -13.88683 -13.49478 -13.44973 -13.16912 -12.99305 -12.65233 -12.45711 -12.32871 -12.23150 -12.13880 -11.88680 -11.87477 -11.64855 -11.23338 -11.13765 -10.96511 -10.49281 -10.47425 -10.33773 -10.01679 -9.78300 -9.65693 -8.83742 -8.66037 -8.36347 -8.12270 -6.53397 -3.95526 1.43832 2.36915 2.60000 2.77159 3.10379 3.20696 3.25188 3.37693 3.43986 3.71682 4.05110 4.10121 4.35026 4.41644 4.54191 4.75968 4.81362 4.85361 4.87033 4.89594 5.02379 5.13219 5.15155 5.20829 5.32653 5.35238 5.42247 5.52683 5.58116 5.60998 5.70550 5.79006 5.84396 5.88002 5.88963 5.93900 5.98598 6.04896 6.34784 6.64036 7.00849 7.44171 7.75640 7.89879 8.38422 8.43784 9.02568 9.37021 9.84825 10.63388 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022415 B = 0.001792 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.872893 B =15620.581071 C =16345.049637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.140 4.140 3 H 0.108 0.892 4 C -0.166 4.166 5 C -0.080 4.080 6 H 0.133 0.867 7 C 0.014 3.986 8 C -0.202 4.202 9 C -0.207 4.207 10 C -0.006 4.006 11 C -0.023 4.023 12 C -0.136 4.136 13 C 0.512 3.488 14 O -0.551 6.551 15 N -0.707 5.707 16 C 0.108 3.892 17 C 0.427 3.573 18 O -0.598 6.598 19 N -0.549 5.549 20 C -0.306 4.306 21 H 0.106 0.894 22 C 0.026 3.974 23 N -0.894 5.894 24 Si 0.934 3.066 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.269 1.269 28 O -0.172 6.172 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.412 0.588 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.396 0.604 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.432 -18.422 -0.819 27.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 H 0.126 0.874 4 C -0.203 4.203 5 C -0.098 4.098 6 H 0.150 0.850 7 C -0.036 4.036 8 C -0.222 4.222 9 C -0.226 4.226 10 C -0.056 4.056 11 C -0.060 4.060 12 C -0.176 4.176 13 C 0.298 3.702 14 O -0.430 6.430 15 N -0.361 5.361 16 C -0.020 4.020 17 C 0.213 3.787 18 O -0.485 6.485 19 N -0.183 5.183 20 C -0.435 4.435 21 H 0.123 0.877 22 C -0.177 4.177 23 N -0.534 5.534 24 Si 0.760 3.240 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.193 1.193 28 O -0.069 6.069 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.164 0.836 35 H 0.167 0.833 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.250 0.750 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.230 0.770 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.209 -18.409 -0.472 27.341 hybrid contribution 0.347 0.927 -0.296 1.033 sum -19.862 -17.483 -0.767 26.471 Atomic orbital electron populations 1.21390 0.92093 1.02325 1.02226 1.22529 0.95536 0.94856 1.02937 0.87381 1.23196 1.03206 1.01394 0.92506 1.20571 0.91964 1.03105 0.94174 0.84964 1.21314 0.87231 1.03381 0.91687 1.21457 0.97521 1.07873 0.95313 1.21593 0.95679 1.06891 0.98427 1.22438 0.91555 1.04484 0.87100 1.19854 0.87110 0.93618 1.05428 1.21638 0.95127 0.95928 1.04950 1.20466 0.90532 0.82177 0.77010 1.90699 1.47156 1.55818 1.49290 1.45733 1.12169 1.07259 1.70892 1.20961 0.84449 0.93999 1.02545 1.19750 0.85167 0.88079 0.85735 1.90497 1.32907 1.69623 1.55434 1.41800 1.08989 1.07600 1.59933 1.19733 0.96897 0.81160 1.45727 0.87666 1.25334 0.94702 1.01018 0.96669 1.69619 0.99976 1.36930 1.46892 0.85805 0.77684 0.81720 0.78770 1.20257 1.20778 1.19318 1.83924 1.19687 1.65506 1.37751 0.91660 0.91887 0.92301 0.88052 0.87931 0.83617 0.83333 0.89205 0.87854 0.88272 0.88483 0.75036 0.89823 0.89810 0.77023 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 10.19 37.16 0.38 -0.25 16 2 C -0.14 -0.99 6.11 -90.62 -0.55 -1.54 16 3 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.17 -1.16 9.81 -26.73 -0.26 -1.43 16 5 C -0.08 -0.61 5.96 -91.77 -0.55 -1.16 16 6 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 7 C 0.01 0.14 6.80 -35.62 -0.24 -0.10 16 8 C -0.20 -1.99 10.81 -39.70 -0.43 -2.42 16 9 C -0.21 -2.12 10.81 -39.70 -0.43 -2.55 16 10 C -0.01 -0.06 6.57 -35.62 -0.23 -0.30 16 11 C -0.02 -0.24 5.04 -27.88 -0.14 -0.38 16 12 C -0.14 -1.48 5.68 -27.88 -0.16 -1.64 16 13 C 0.51 7.56 7.83 -10.99 -0.09 7.47 16 14 O -0.55 -9.75 15.98 5.55 0.09 -9.66 16 15 N -0.71 -11.36 5.53 -61.47 -0.34 -11.70 16 16 C 0.11 1.96 6.15 -5.20 -0.03 1.93 16 17 C 0.43 9.71 7.85 -10.99 -0.09 9.62 16 18 O -0.60 -15.19 15.24 5.55 0.08 -15.10 16 19 N -0.55 -13.53 5.29 -10.97 -0.06 -13.59 16 20 C -0.31 -8.28 9.68 -14.94 -0.14 -8.42 16 21 H 0.11 2.97 7.16 -52.48 -0.38 2.59 16 22 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 23 N -0.89 -23.76 13.05 55.50 0.72 -23.04 16 24 Si 0.93 20.45 29.55 -169.99 -5.02 15.43 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 28 O -0.17 -2.02 10.36 5.72 0.06 -1.96 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.25 7.90 -51.93 -0.41 -0.16 16 32 H 0.10 0.82 7.96 -51.93 -0.41 0.41 16 33 H 0.10 0.54 8.05 -51.93 -0.42 0.13 16 34 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 35 H 0.15 1.27 8.06 -52.48 -0.42 0.84 16 36 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 37 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.41 6.49 7.44 -40.82 -0.30 6.18 16 41 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 42 H 0.08 1.46 8.14 -51.92 -0.42 1.03 16 43 H 0.40 9.39 7.90 -40.82 -0.32 9.06 16 44 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 383.28 15.07 5.78 5.78 Total: -1.00 -31.74 383.28 -8.20 -39.94 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -6.45 Total: 14.48 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -3.06 Total: -0.58 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.33 Total: -48.33 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: 0.23 Total: -26.72 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.74 -8.20 -39.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588078622.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.898 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds