Wall clock time and date at job start Tue Mar 31 2020 12:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 115.55181 * 2 1 4 4 C 1.53078 * 117.53317 * 214.28420 * 2 1 3 5 5 C 1.52998 * 59.98577 * 252.52990 * 4 2 1 6 6 H 1.09002 * 117.50170 * 252.49727 * 5 4 2 7 7 C 1.50706 * 117.49582 * 107.49847 * 5 4 2 8 8 C 1.34518 * 125.78706 * 171.25311 * 7 5 4 9 9 C 1.41384 * 106.83852 * 179.75414 * 8 7 5 10 10 C 1.34510 * 106.84002 * 0.36937 * 9 8 7 11 11 C 1.50703 * 125.78886 * 179.89033 * 10 9 8 12 12 C 1.53000 * 109.46912 * 89.72067 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 O 1.21273 * 120.00140 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99767 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00054 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47174 * 179.97438 * 16 15 13 18 18 O 1.21289 * 119.99822 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00115 * 180.02562 * 17 16 15 20 20 C 1.37092 * 120.00498 * 180.02562 * 19 17 16 21 21 H 1.08007 * 119.99263 * 0.02562 * 20 19 17 22 22 C 1.38941 * 120.00398 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00205 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00273 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47268 * 89.99721 * 24 22 20 26 26 H 1.48498 * 109.47211 * 209.99980 * 24 22 20 27 27 H 1.48505 * 109.46734 * 329.99774 * 24 22 20 28 28 O 1.34295 * 125.79118 * 351.23238 * 7 5 4 29 29 H 1.08996 * 109.47022 * 274.32442 * 1 2 3 30 30 H 1.09001 * 109.47264 * 34.32931 * 1 2 3 31 31 H 1.09002 * 109.46986 * 154.33230 * 1 2 3 32 32 H 1.09002 * 117.49082 * 145.04660 * 4 2 1 33 33 H 1.09000 * 117.51224 * 0.02562 * 4 2 1 34 34 H 1.08004 * 126.58002 * 0.02562 * 8 7 5 35 35 H 1.07994 * 126.57700 * 180.24228 * 9 8 7 36 36 H 1.09002 * 109.47152 * 329.71839 * 11 10 9 37 37 H 1.09001 * 109.46980 * 209.71939 * 11 10 9 38 38 H 1.09001 * 109.47194 * 299.99742 * 12 11 10 39 39 H 1.08992 * 109.47399 * 59.99914 * 12 11 10 40 40 H 0.97005 * 119.99680 * 359.97438 * 15 13 12 41 41 H 1.08998 * 109.47245 * 300.00495 * 16 15 13 42 42 H 1.09002 * 109.47021 * 59.99873 * 16 15 13 43 43 H 0.97003 * 119.99640 * 0.02562 * 19 17 16 44 44 H 0.97002 * 120.00214 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2376 -1.1216 -0.7646 5 6 2.2365 -1.1208 0.7654 6 1 3.1712 -0.8746 1.2692 7 6 1.3720 -2.1405 1.4610 8 6 1.3685 -2.3996 2.7810 9 6 0.4089 -3.4153 2.9965 10 6 -0.1107 -3.7219 1.7943 11 6 -1.1734 -4.7577 1.5317 12 6 -2.5549 -4.1086 1.6360 13 6 -3.6176 -5.1446 1.3739 14 8 -3.3011 -6.2891 1.1276 15 7 -4.9198 -4.7989 1.4124 16 6 -5.9528 -5.8057 1.1572 17 6 -7.3136 -5.1665 1.2600 18 8 -7.4109 -3.9858 1.5203 19 7 -8.4226 -5.9066 1.0626 20 6 -9.6605 -5.3250 1.1556 21 1 -9.7471 -4.2735 1.3866 22 6 -10.8037 -6.0882 0.9527 23 7 -10.6983 -7.3675 0.6711 24 14 -12.4905 -5.2956 1.0787 25 1 -12.8972 -4.7825 -0.2542 26 1 -13.4774 -6.3031 1.5435 27 1 -12.4377 -4.1709 2.0470 28 8 0.4742 -2.9444 0.8684 29 1 -0.3633 0.0775 1.0247 30 1 -0.3634 0.8487 -0.5796 31 1 -0.3633 -0.9263 -0.4451 32 1 3.1729 -0.8755 -1.2673 33 1 1.6131 -1.8595 -1.2682 34 1 1.9782 -1.9202 3.5326 35 1 0.1453 -3.8610 3.9442 36 1 -1.0911 -5.5574 2.2678 37 1 -1.0400 -5.1696 0.5313 38 1 -2.6883 -3.6968 2.6363 39 1 -2.6372 -3.3090 0.8999 40 1 -5.1728 -3.8833 1.6091 41 1 -5.8192 -6.2180 0.1570 42 1 -5.8708 -6.6052 1.8935 43 1 -8.3447 -6.8509 0.8548 44 1 -11.4964 -7.9004 0.5298 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588078623.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:48 Heat of formation + Delta-G solvation = -51.687940 kcal Electronic energy + Delta-G solvation = -25326.365481 eV Core-core repulsion = 21438.633919 eV Total energy + Delta-G solvation = -3887.731561 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.83242 -39.66386 -38.20846 -38.07652 -34.54758 -34.09973 -33.69109 -32.98834 -31.40687 -29.72641 -28.71827 -27.55763 -25.19000 -24.09411 -22.33206 -22.10374 -20.93141 -20.14119 -19.92297 -19.56400 -18.13525 -17.42465 -16.59286 -16.38566 -15.96759 -15.73093 -15.55844 -15.37255 -14.73796 -14.54879 -14.30648 -13.95667 -13.52010 -13.46059 -13.39349 -13.17460 -13.00515 -12.76138 -12.46089 -12.27082 -12.14934 -12.14131 -11.89040 -11.80711 -11.64920 -11.22656 -11.13843 -10.93101 -10.47498 -10.42121 -10.33893 -10.00555 -9.78289 -9.65801 -8.83757 -8.66116 -8.35827 -8.12403 -6.53438 -3.95605 1.45454 2.38133 2.61441 2.77197 3.10338 3.20645 3.25146 3.37910 3.45721 3.71605 4.08719 4.11590 4.29182 4.44674 4.57539 4.76434 4.82332 4.85281 4.89847 4.95166 5.02690 5.13649 5.15146 5.28899 5.39478 5.42401 5.48599 5.53431 5.58313 5.69848 5.71721 5.78550 5.87924 5.88971 5.93491 5.93878 6.04179 6.04975 6.35930 6.64021 7.02469 7.44085 7.75615 7.89794 8.38412 8.43713 9.02485 9.36944 9.84722 10.63354 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023950 B = 0.001890 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.846030 B =14811.612708 C =15455.242806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.138 4.138 3 H 0.112 0.888 4 C -0.168 4.168 5 C -0.083 4.083 6 H 0.132 0.868 7 C 0.019 3.981 8 C -0.204 4.204 9 C -0.206 4.206 10 C -0.007 4.007 11 C -0.023 4.023 12 C -0.136 4.136 13 C 0.512 3.488 14 O -0.551 6.551 15 N -0.707 5.707 16 C 0.108 3.892 17 C 0.427 3.573 18 O -0.598 6.598 19 N -0.549 5.549 20 C -0.305 4.305 21 H 0.106 0.894 22 C 0.025 3.975 23 N -0.894 5.894 24 Si 0.934 3.066 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.269 1.269 28 O -0.170 6.170 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.412 0.588 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.396 0.604 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.703 9.995 0.777 26.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.157 4.157 3 H 0.130 0.870 4 C -0.204 4.204 5 C -0.101 4.101 6 H 0.150 0.850 7 C -0.031 4.031 8 C -0.224 4.224 9 C -0.226 4.226 10 C -0.057 4.057 11 C -0.060 4.060 12 C -0.176 4.176 13 C 0.298 3.702 14 O -0.429 6.429 15 N -0.361 5.361 16 C -0.020 4.020 17 C 0.213 3.787 18 O -0.484 6.484 19 N -0.183 5.183 20 C -0.435 4.435 21 H 0.123 0.877 22 C -0.178 4.178 23 N -0.534 5.534 24 Si 0.760 3.240 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.193 1.193 28 O -0.067 6.067 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.163 0.837 35 H 0.166 0.834 36 H 0.121 0.879 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.250 0.750 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.230 0.770 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 24.588 9.796 0.429 26.471 hybrid contribution -0.893 0.141 0.306 0.954 sum 23.695 9.937 0.735 25.705 Atomic orbital electron populations 1.21391 0.92210 1.02476 1.02261 1.22530 0.96139 0.94107 1.02881 0.86986 1.23215 1.03048 1.01666 0.92515 1.20603 0.98756 0.96563 0.94183 0.85006 1.21221 0.94499 0.95737 0.91595 1.21451 1.03562 1.02036 0.95307 1.21578 1.00915 1.01678 0.98384 1.22425 0.99275 0.96848 0.87131 1.19847 0.87705 0.93061 1.05392 1.21637 0.92632 0.98418 1.04933 1.20470 0.83315 0.89400 0.77007 1.90695 1.82155 1.20833 1.49264 1.45735 1.04906 1.14495 1.70926 1.20959 0.87111 0.91337 1.02547 1.19752 0.85459 0.87787 0.85730 1.90496 1.86471 1.16042 1.55440 1.41802 1.04878 1.11703 1.59957 1.19729 0.81387 0.96626 1.45741 0.87668 1.25333 1.00336 0.95402 0.96681 1.69614 1.31003 1.05899 1.46912 0.85804 0.80712 0.78692 0.78771 1.20252 1.20784 1.19312 1.83936 1.43696 1.41343 1.37705 0.92050 0.91844 0.91967 0.88034 0.87990 0.83692 0.83412 0.87899 0.89239 0.88295 0.88491 0.75040 0.89827 0.89819 0.77023 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 9.15 37.16 0.34 -0.67 16 2 C -0.14 -0.95 6.41 -90.58 -0.58 -1.53 16 3 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 4 C -0.17 -1.16 9.82 -26.69 -0.26 -1.42 16 5 C -0.08 -0.62 6.24 -91.77 -0.57 -1.19 16 6 H 0.13 0.73 8.14 -51.93 -0.42 0.30 16 7 C 0.02 0.19 5.90 -35.62 -0.21 -0.02 16 8 C -0.20 -1.98 10.81 -39.70 -0.43 -2.41 16 9 C -0.21 -2.09 10.81 -39.70 -0.43 -2.52 16 10 C -0.01 -0.07 6.57 -35.62 -0.23 -0.31 16 11 C -0.02 -0.24 5.04 -27.88 -0.14 -0.38 16 12 C -0.14 -1.46 5.68 -27.88 -0.16 -1.62 16 13 C 0.51 7.51 7.83 -10.98 -0.09 7.42 16 14 O -0.55 -9.70 15.98 5.56 0.09 -9.61 16 15 N -0.71 -11.30 5.53 -61.47 -0.34 -11.64 16 16 C 0.11 1.96 6.15 -5.20 -0.03 1.92 16 17 C 0.43 9.69 7.85 -10.98 -0.09 9.60 16 18 O -0.60 -15.14 15.24 5.55 0.08 -15.06 16 19 N -0.55 -13.52 5.29 -10.97 -0.06 -13.57 16 20 C -0.31 -8.26 9.68 -14.94 -0.14 -8.40 16 21 H 0.11 2.96 7.16 -52.48 -0.38 2.59 16 22 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 23 N -0.89 -23.76 13.05 55.50 0.72 -23.03 16 24 Si 0.93 20.44 29.55 -169.99 -5.02 15.41 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 28 O -0.17 -1.93 9.63 5.72 0.06 -1.87 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.57 7.27 -51.93 -0.38 0.19 16 32 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 0.83 7.88 -51.93 -0.41 0.42 16 34 H 0.15 1.11 8.06 -52.48 -0.42 0.68 16 35 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.10 1.05 8.10 -51.93 -0.42 0.63 16 37 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.41 6.45 7.44 -40.82 -0.30 6.15 16 41 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 42 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.40 9.37 7.90 -40.82 -0.32 9.05 16 44 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 LS Contribution 380.56 15.07 5.73 5.73 Total: -1.00 -31.61 380.56 -8.27 -39.87 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -6.41 Total: 14.71 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -3.12 Total: -0.94 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.33 Total: -48.25 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: 0.23 Total: -26.54 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.61 -8.27 -39.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588078623.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.814 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds