Wall clock time and date at job start Tue Mar 31 2020 12:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 115.55181 * 2 1 4 4 C 1.53078 * 117.53317 * 214.28420 * 2 1 3 5 5 C 1.52998 * 59.98577 * 252.52990 * 4 2 1 6 6 H 1.09002 * 117.50170 * 252.49727 * 5 4 2 7 7 C 1.50706 * 117.49582 * 107.49847 * 5 4 2 8 8 C 1.34518 * 125.78706 * 171.25311 * 7 5 4 9 9 C 1.41384 * 106.83852 * 179.75414 * 8 7 5 10 10 C 1.34510 * 106.84002 * 0.36937 * 9 8 7 11 11 C 1.50703 * 125.78886 * 179.89033 * 10 9 8 12 12 C 1.53000 * 109.46912 * 89.72067 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 O 1.21273 * 120.00140 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99767 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00054 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47174 * 179.97438 * 16 15 13 18 18 O 1.21289 * 119.99822 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00115 * 180.02562 * 17 16 15 20 20 C 1.37092 * 120.00498 * 180.02562 * 19 17 16 21 21 H 1.08007 * 119.99263 * 0.02562 * 20 19 17 22 22 C 1.38941 * 120.00398 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00205 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00273 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47268 * 89.99721 * 24 22 20 26 26 H 1.48498 * 109.47211 * 209.99980 * 24 22 20 27 27 H 1.48505 * 109.46734 * 329.99774 * 24 22 20 28 28 O 1.34295 * 125.79118 * 351.23238 * 7 5 4 29 29 H 1.08996 * 109.47022 * 274.32442 * 1 2 3 30 30 H 1.09001 * 109.47264 * 34.32931 * 1 2 3 31 31 H 1.09002 * 109.46986 * 154.33230 * 1 2 3 32 32 H 1.09002 * 117.49082 * 145.04660 * 4 2 1 33 33 H 1.09000 * 117.51224 * 0.02562 * 4 2 1 34 34 H 1.08004 * 126.58002 * 0.02562 * 8 7 5 35 35 H 1.07994 * 126.57700 * 180.24228 * 9 8 7 36 36 H 1.09002 * 109.47152 * 329.71839 * 11 10 9 37 37 H 1.09001 * 109.46980 * 209.71939 * 11 10 9 38 38 H 1.09001 * 109.47194 * 299.99742 * 12 11 10 39 39 H 1.08992 * 109.47399 * 59.99914 * 12 11 10 40 40 H 0.97005 * 119.99680 * 359.97438 * 15 13 12 41 41 H 1.08998 * 109.47245 * 300.00495 * 16 15 13 42 42 H 1.09002 * 109.47021 * 59.99873 * 16 15 13 43 43 H 0.97003 * 119.99640 * 0.02562 * 19 17 16 44 44 H 0.97002 * 120.00214 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2376 -1.1216 -0.7646 5 6 2.2365 -1.1208 0.7654 6 1 3.1712 -0.8746 1.2692 7 6 1.3720 -2.1405 1.4610 8 6 1.3685 -2.3996 2.7810 9 6 0.4089 -3.4153 2.9965 10 6 -0.1107 -3.7219 1.7943 11 6 -1.1734 -4.7577 1.5317 12 6 -2.5549 -4.1086 1.6360 13 6 -3.6176 -5.1446 1.3739 14 8 -3.3011 -6.2891 1.1276 15 7 -4.9198 -4.7989 1.4124 16 6 -5.9528 -5.8057 1.1572 17 6 -7.3136 -5.1665 1.2600 18 8 -7.4109 -3.9858 1.5203 19 7 -8.4226 -5.9066 1.0626 20 6 -9.6605 -5.3250 1.1556 21 1 -9.7471 -4.2735 1.3866 22 6 -10.8037 -6.0882 0.9527 23 7 -10.6983 -7.3675 0.6711 24 14 -12.4905 -5.2956 1.0787 25 1 -12.8972 -4.7825 -0.2542 26 1 -13.4774 -6.3031 1.5435 27 1 -12.4377 -4.1709 2.0470 28 8 0.4742 -2.9444 0.8684 29 1 -0.3633 0.0775 1.0247 30 1 -0.3634 0.8487 -0.5796 31 1 -0.3633 -0.9263 -0.4451 32 1 3.1729 -0.8755 -1.2673 33 1 1.6131 -1.8595 -1.2682 34 1 1.9782 -1.9202 3.5326 35 1 0.1453 -3.8610 3.9442 36 1 -1.0911 -5.5574 2.2678 37 1 -1.0400 -5.1696 0.5313 38 1 -2.6883 -3.6968 2.6363 39 1 -2.6372 -3.3090 0.8999 40 1 -5.1728 -3.8833 1.6091 41 1 -5.8192 -6.2180 0.1570 42 1 -5.8708 -6.6052 1.8935 43 1 -8.3447 -6.8509 0.8548 44 1 -11.4964 -7.9004 0.5298 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588078623.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:47 Heat of formation + Delta-G solvation = -71.244761 kcal Electronic energy + Delta-G solvation = -25327.213528 eV Core-core repulsion = 21438.633919 eV Total energy + Delta-G solvation = -3888.579609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.58906 -41.02928 -39.92245 -38.67018 -36.27711 -35.32909 -35.00010 -33.75969 -33.38111 -30.61853 -29.58308 -28.76789 -26.69521 -25.36605 -23.02101 -22.83057 -21.63218 -21.39940 -21.24465 -20.62720 -20.06882 -18.66885 -17.50046 -17.31178 -17.13651 -17.01863 -16.75117 -16.51798 -16.25174 -15.96430 -15.66837 -15.36683 -14.80463 -14.44845 -14.14749 -14.04358 -13.94178 -13.74034 -13.57881 -13.54754 -13.35828 -13.25991 -12.99184 -12.90501 -12.73561 -12.46548 -12.37331 -12.13160 -12.07717 -11.57878 -11.51311 -11.07316 -10.97357 -10.71198 -10.57054 -10.20688 -10.08889 -9.09731 -8.51852 -6.02181 0.69707 1.35848 1.42476 1.54995 1.57894 1.63525 1.85594 1.90272 2.12320 2.33148 2.89744 3.12242 3.15272 3.46128 3.65505 3.76707 3.88096 3.95029 4.04517 4.11869 4.18449 4.25948 4.36490 4.42598 4.43539 4.44503 4.57973 4.71448 4.78406 4.86014 4.87548 4.91385 4.97232 5.06774 5.14428 5.16629 5.21866 5.28752 5.37765 5.40597 5.64689 5.90901 6.26835 6.44627 6.52425 7.02618 7.15261 7.43497 7.93488 8.64932 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023950 B = 0.001890 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.846030 B =14811.612708 C =15455.242806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.136 4.136 3 H 0.134 0.866 4 C -0.168 4.168 5 C -0.091 4.091 6 H 0.155 0.845 7 C 0.012 3.988 8 C -0.215 4.215 9 C -0.208 4.208 10 C -0.024 4.024 11 C -0.016 4.016 12 C -0.125 4.125 13 C 0.516 3.484 14 O -0.580 6.580 15 N -0.709 5.709 16 C 0.120 3.880 17 C 0.432 3.568 18 O -0.624 6.624 19 N -0.560 5.560 20 C -0.337 4.337 21 H 0.086 0.914 22 C -0.012 4.012 23 N -0.916 5.916 24 Si 0.997 3.003 25 H -0.270 1.270 26 H -0.272 1.272 27 H -0.270 1.270 28 O -0.186 6.186 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.122 0.878 33 H 0.084 0.916 34 H 0.165 0.835 35 H 0.162 0.838 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.119 0.881 39 H 0.108 0.892 40 H 0.414 0.586 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.399 0.601 44 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.750 11.065 1.136 28.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.154 4.154 3 H 0.152 0.848 4 C -0.205 4.205 5 C -0.109 4.109 6 H 0.172 0.828 7 C -0.038 4.038 8 C -0.234 4.234 9 C -0.227 4.227 10 C -0.074 4.074 11 C -0.053 4.053 12 C -0.164 4.164 13 C 0.304 3.696 14 O -0.460 6.460 15 N -0.363 5.363 16 C -0.008 4.008 17 C 0.219 3.781 18 O -0.512 6.512 19 N -0.195 5.195 20 C -0.467 4.467 21 H 0.104 0.896 22 C -0.212 4.212 23 N -0.556 5.556 24 Si 0.821 3.179 25 H -0.196 1.196 26 H -0.197 1.197 27 H -0.194 1.194 28 O -0.084 6.084 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.141 0.859 33 H 0.102 0.898 34 H 0.182 0.818 35 H 0.180 0.820 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.137 0.863 39 H 0.126 0.874 40 H 0.253 0.747 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.233 0.767 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 25.656 10.860 0.787 27.871 hybrid contribution -1.135 -0.175 0.189 1.164 sum 24.521 10.684 0.976 26.766 Atomic orbital electron populations 1.21382 0.93379 1.01985 1.01691 1.22617 0.95312 0.95000 1.02430 0.84778 1.23249 1.03684 1.01256 0.92277 1.20855 0.99291 0.96211 0.94517 0.82767 1.21783 0.94189 0.95700 0.92134 1.21765 1.03801 1.02100 0.95737 1.21862 1.00629 1.01551 0.98688 1.22444 1.00006 0.97464 0.87472 1.19743 0.87611 0.93124 1.04848 1.21618 0.91135 0.97287 1.06379 1.21075 0.83180 0.89694 0.75669 1.90685 1.82434 1.22388 1.50500 1.45776 1.05030 1.14146 1.71333 1.20775 0.84865 0.91640 1.03484 1.20463 0.86620 0.87358 0.83671 1.90472 1.87286 1.17394 1.56094 1.41859 1.04930 1.11944 1.60802 1.19733 0.82975 0.96226 1.47722 0.89570 1.26140 1.03446 0.95880 0.95763 1.69679 1.32190 1.06744 1.46963 0.84860 0.76364 0.77889 0.78826 1.19569 1.19653 1.19439 1.83927 1.44276 1.41821 1.38343 0.92881 0.90853 0.93700 0.85943 0.89775 0.81771 0.82007 0.87678 0.90325 0.86266 0.87370 0.74731 0.88884 0.88728 0.76702 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 9.15 71.98 0.66 -1.27 16 2 C -0.14 -1.62 6.41 -10.77 -0.07 -1.69 16 3 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.17 -2.08 9.82 30.62 0.30 -1.78 16 5 C -0.09 -1.20 6.24 -11.54 -0.07 -1.27 16 6 H 0.15 1.28 8.14 -2.39 -0.02 1.26 16 7 C 0.01 0.22 5.90 24.84 0.15 0.37 16 8 C -0.22 -3.84 10.81 22.19 0.24 -3.60 16 9 C -0.21 -3.95 10.81 22.19 0.24 -3.71 16 10 C -0.02 -0.51 6.57 24.83 0.16 -0.35 16 11 C -0.02 -0.32 5.04 29.85 0.15 -0.17 16 12 C -0.12 -2.52 5.68 29.85 0.17 -2.35 16 13 C 0.52 14.66 7.83 87.66 0.69 15.34 16 14 O -0.58 -20.07 15.98 -3.01 -0.05 -20.12 16 15 N -0.71 -22.11 5.53 -466.79 -2.58 -24.69 16 16 C 0.12 4.29 6.15 85.63 0.53 4.82 16 17 C 0.43 19.70 7.85 87.66 0.69 20.39 16 18 O -0.62 -31.91 15.24 -3.06 -0.05 -31.96 16 19 N -0.56 -27.96 5.29 -306.99 -1.62 -29.59 16 20 C -0.34 -18.51 9.68 84.04 0.81 -17.69 16 21 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 22 C -0.01 -0.60 5.50 84.92 0.47 -0.14 16 23 N -0.92 -48.50 13.05 21.66 0.28 -48.22 16 24 Si 1.00 41.60 29.55 68.60 2.03 43.63 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 26 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 27 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 28 O -0.19 -4.17 9.63 -2.44 -0.02 -4.20 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.04 0.82 7.27 -2.39 -0.02 0.81 16 32 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 1.35 7.88 -2.39 -0.02 1.33 16 34 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 36 H 0.10 2.08 8.10 -2.39 -0.02 2.06 16 37 H 0.08 1.77 8.10 -2.39 -0.02 1.75 16 38 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.11 1.99 8.14 -2.39 -0.02 1.98 16 40 H 0.41 12.69 7.44 -92.70 -0.69 12.00 16 41 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 42 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 43 H 0.40 19.14 7.90 -92.71 -0.73 18.41 16 44 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -67.56 380.56 2.71 -64.85 By element: Atomic # 1 Polarization: 43.80 SS G_CDS: -0.39 Total: 43.42 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 5.11 Total: 6.89 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -3.92 Total: -102.50 kcal Atomic # 8 Polarization: -56.16 SS G_CDS: -0.12 Total: -56.28 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -67.56 2.71 -64.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588078623.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.395 kcal (2) G-P(sol) polarization free energy of solvation -67.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds