Wall clock time and date at job start Tue Mar 31 2020 13:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 5 5 C 1.34777 * 120.00258 * 85.00009 * 4 2 1 6 6 O 1.21279 * 120.00166 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99762 * 179.97438 * 5 4 2 8 8 C 1.53002 * 109.46925 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47340 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.47340 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.46919 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00202 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99746 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99981 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99783 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47361 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46497 * 120.00064 * 15 13 11 18 18 H 1.48500 * 109.47264 * 239.99883 * 15 13 11 19 19 C 1.50698 * 109.47254 * 119.99584 * 2 1 3 20 20 C 1.38262 * 119.99637 * 80.00289 * 19 2 1 21 21 C 1.38218 * 119.99451 * 179.97438 * 20 19 2 22 22 C 1.38251 * 120.00350 * 0.02562 * 21 20 19 23 23 C 1.38216 * 120.00221 * 359.97438 * 22 21 20 24 24 N 1.48015 * 120.00376 * 180.02562 * 23 22 21 25 25 O 1.21796 * 120.00037 * 359.97438 * 24 23 22 26 26 O 1.21800 * 120.00138 * 180.02562 * 24 23 22 27 27 C 1.38209 * 120.00136 * 259.73061 * 19 2 1 28 28 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 29 29 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 30 30 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 31 31 H 0.96999 * 119.99694 * 264.99399 * 4 2 1 32 32 H 1.09000 * 109.47318 * 299.99141 * 7 5 4 33 33 H 1.09000 * 109.47161 * 59.99772 * 7 5 4 34 34 H 1.09004 * 109.46930 * 299.99901 * 8 7 5 35 35 H 1.09004 * 109.47059 * 59.99503 * 8 7 5 36 36 H 1.09004 * 109.46785 * 299.99692 * 9 8 7 37 37 H 1.09000 * 109.47196 * 59.99588 * 9 8 7 38 38 H 1.09000 * 109.46497 * 299.99439 * 10 9 8 39 39 H 1.08999 * 109.46623 * 59.99375 * 10 9 8 40 40 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 41 41 H 1.07992 * 120.00115 * 0.02562 * 20 19 2 42 42 H 1.08002 * 119.99321 * 180.02562 * 21 20 19 43 43 H 1.07997 * 120.00272 * 180.02562 * 22 21 20 44 44 H 1.08003 * 119.99855 * 359.97438 * 27 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8582 1.1584 -2.4118 7 6 2.6500 -0.7286 -3.5874 8 6 2.7007 0.2543 -4.7589 9 6 3.2107 -0.4669 -6.0081 10 6 3.2621 0.5162 -7.1794 11 6 3.7650 -0.1941 -8.4096 12 1 4.0226 -1.2418 -8.3609 13 6 3.8962 0.4936 -9.5975 14 7 3.5829 1.7695 -9.6567 15 14 4.5202 -0.3868 -11.1223 16 1 4.8012 -1.8074 -10.7936 17 1 3.4890 -0.3205 -12.1888 18 1 5.7659 0.2678 -11.5968 19 6 2.0324 -0.7103 1.2305 20 6 2.0668 -2.0921 1.2654 21 6 2.5281 -2.7435 2.3938 22 6 2.9545 -2.0135 3.4877 23 6 2.9200 -0.6322 3.4528 24 7 3.3771 0.1493 4.6238 25 8 3.7831 -0.4247 5.6183 26 8 3.3463 1.3666 4.5932 27 6 2.4639 0.0195 2.3219 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 2.2491 -1.6317 -1.1525 32 1 3.6494 -1.1203 -3.3979 33 1 1.9778 -1.5509 -3.8325 34 1 1.7012 0.6457 -4.9483 35 1 3.3726 1.0770 -4.5140 36 1 4.2102 -0.8586 -5.8189 37 1 2.5384 -1.2893 -6.2527 38 1 2.2628 0.9082 -7.3687 39 1 3.9345 1.3383 -6.9344 40 1 3.6756 2.2533 -10.4922 41 1 1.7341 -2.6622 0.4107 42 1 2.5553 -3.8228 2.4208 43 1 3.3153 -2.5225 4.3692 44 1 2.4415 1.0989 2.2928 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588151943.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:54 Heat of formation + Delta-G solvation = -41.766111 kcal Electronic energy + Delta-G solvation = -25200.558952 eV Core-core repulsion = 21313.257633 eV Total energy + Delta-G solvation = -3887.301319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.61039 -40.74456 -39.53195 -36.98076 -36.21549 -34.89836 -32.81647 -32.51926 -32.34623 -30.30576 -29.35359 -27.10896 -25.86521 -24.58947 -23.34492 -22.65338 -21.50226 -20.44326 -20.03884 -19.41184 -19.02816 -17.93582 -17.45236 -16.96355 -16.65551 -16.19202 -15.78447 -15.57738 -15.11139 -14.56285 -14.50800 -14.30592 -13.89059 -13.87325 -13.17123 -13.05062 -12.74489 -12.66352 -12.36871 -12.17843 -11.97865 -11.75441 -11.65384 -11.62253 -11.54902 -11.53368 -11.02849 -10.59488 -10.51579 -10.46208 -10.26533 -10.04441 -9.85623 -9.66272 -9.44759 -9.26404 -9.00473 -8.33408 -5.97927 -4.00515 -0.68923 0.23138 0.82716 0.92116 2.52941 2.58905 2.88814 3.30975 3.38293 3.41888 3.58738 3.79216 4.04331 4.14472 4.26852 4.38593 4.46448 4.66975 4.75245 4.84622 4.88545 5.07103 5.18194 5.21881 5.26237 5.27956 5.30625 5.37563 5.50406 5.61196 5.75669 5.78148 5.95373 6.07445 6.09361 6.24074 6.48727 6.78467 6.96272 7.14387 7.19905 7.21069 7.71321 7.86600 8.03147 8.08009 8.44943 9.07395 9.63298 11.13385 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026656 B = 0.001734 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.167174 B =16143.271307 C =16224.598557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 H 0.104 0.896 4 N -0.737 5.737 5 C 0.515 3.485 6 O -0.528 6.528 7 C -0.138 4.138 8 C -0.104 4.104 9 C -0.110 4.110 10 C 0.019 3.981 11 C -0.520 4.520 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.894 5.894 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.085 4.085 20 C -0.063 4.063 21 C -0.111 4.111 22 C -0.057 4.057 23 C -0.040 4.040 24 N 0.027 4.973 25 O -0.159 6.159 26 O -0.155 6.155 27 C -0.044 4.044 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.398 0.602 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.144 0.856 42 H 0.151 0.849 43 H 0.155 0.845 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.151 -11.445 28.658 31.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.077 3.923 3 H 0.122 0.878 4 N -0.391 5.391 5 C 0.303 3.697 6 O -0.403 6.403 7 C -0.178 4.178 8 C -0.142 4.142 9 C -0.148 4.148 10 C -0.018 4.018 11 C -0.559 4.559 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.534 5.534 15 Si 0.719 3.281 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.087 4.087 20 C -0.082 4.082 21 C -0.129 4.129 22 C -0.076 4.076 23 C -0.123 4.123 24 N 0.547 4.453 25 O -0.375 6.375 26 O -0.372 6.372 27 C -0.064 4.064 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.233 0.767 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.161 0.839 42 H 0.169 0.831 43 H 0.172 0.828 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.586 -10.796 27.912 30.444 hybrid contribution 0.590 -0.719 -0.468 1.041 sum -4.996 -11.514 27.445 30.179 Atomic orbital electron populations 1.22200 0.93400 1.02725 1.03515 1.19753 0.94702 0.97102 0.80738 0.87795 1.46258 1.69406 1.14016 1.09466 1.21165 0.76651 0.87519 0.84357 1.90725 1.48720 1.16098 1.84760 1.21813 1.02528 1.00537 0.92946 1.21464 1.02550 0.97234 0.92932 1.21651 0.99169 0.99265 0.94709 1.19103 0.97252 0.94134 0.91305 1.21314 1.43525 0.96362 0.94668 0.92710 1.25051 0.95683 0.94879 0.99008 1.69982 1.48790 1.08175 1.26444 0.86555 0.78516 0.79800 0.83220 1.19798 1.21045 1.21039 1.20010 0.99275 0.93854 0.95525 1.21477 0.94422 0.93835 0.98421 1.21235 0.98558 1.01214 0.91910 1.21135 0.95283 0.90762 1.00387 1.21103 1.10621 0.92162 0.88382 1.43616 0.98263 1.01415 1.01988 1.94545 1.47900 1.72740 1.22311 1.94576 1.58723 0.95416 1.88503 1.20919 0.93111 1.02398 0.89926 0.91354 0.90685 0.92075 0.76675 0.89062 0.89013 0.91736 0.91747 0.93482 0.93467 0.96572 0.96576 0.93077 0.83874 0.83124 0.82772 0.82561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.46 37.16 0.35 -0.73 16 2 C 0.18 1.31 2.78 -69.09 -0.19 1.12 16 3 H 0.10 0.94 7.44 -51.93 -0.39 0.55 16 4 N -0.74 -5.64 5.03 -54.93 -0.28 -5.92 16 5 C 0.52 6.15 7.79 -10.98 -0.09 6.07 16 6 O -0.53 -8.61 15.65 5.56 0.09 -8.53 16 7 C -0.14 -1.62 5.70 -27.88 -0.16 -1.78 16 8 C -0.10 -1.75 4.50 -26.73 -0.12 -1.87 16 9 C -0.11 -2.19 5.15 -26.73 -0.14 -2.33 16 10 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 11 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 12 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 13 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 15 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 C -0.09 -0.48 4.95 -104.62 -0.52 -1.00 16 20 C -0.06 -0.23 9.06 -39.58 -0.36 -0.58 16 21 C -0.11 -0.35 10.05 -39.58 -0.40 -0.75 16 22 C -0.06 -0.29 9.56 -39.58 -0.38 -0.67 16 23 C -0.04 -0.30 6.85 -79.95 -0.55 -0.85 16 24 N 0.03 0.28 4.45 33.96 0.15 0.43 16 25 O -0.16 -1.73 18.45 -29.46 -0.54 -2.27 16 26 O -0.16 -1.79 18.45 -29.46 -0.54 -2.33 16 27 C -0.04 -0.30 9.18 -39.58 -0.36 -0.66 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.40 1.84 6.87 -40.82 -0.28 1.55 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.17 8.10 -51.93 -0.42 0.74 16 35 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.14 0.19 6.92 -52.49 -0.36 -0.17 16 42 H 0.15 0.06 8.06 -52.49 -0.42 -0.36 16 43 H 0.15 0.61 7.61 -52.49 -0.40 0.21 16 44 H 0.16 1.03 7.59 -52.48 -0.40 0.63 16 LS Contribution 380.75 15.07 5.74 5.74 Total: -1.00 -35.28 380.75 -9.57 -44.84 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -6.44 Total: -4.77 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -3.46 Total: -17.32 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.61 Total: -32.03 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -1.00 Total: -13.13 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.28 -9.57 -44.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588151943.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.078 kcal (2) G-P(sol) polarization free energy of solvation -35.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds