Wall clock time and date at job start Tue Mar 31 2020 13:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 5 5 C 1.34777 * 120.00258 * 85.00009 * 4 2 1 6 6 O 1.21279 * 120.00166 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99762 * 179.97438 * 5 4 2 8 8 C 1.53002 * 109.46925 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.47340 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.47340 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.46919 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00202 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99746 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99981 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99783 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47361 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46497 * 120.00064 * 15 13 11 18 18 H 1.48500 * 109.47264 * 239.99883 * 15 13 11 19 19 C 1.50698 * 109.47254 * 119.99584 * 2 1 3 20 20 C 1.38262 * 119.99637 * 80.00289 * 19 2 1 21 21 C 1.38218 * 119.99451 * 179.97438 * 20 19 2 22 22 C 1.38251 * 120.00350 * 0.02562 * 21 20 19 23 23 C 1.38216 * 120.00221 * 359.97438 * 22 21 20 24 24 N 1.48015 * 120.00376 * 180.02562 * 23 22 21 25 25 O 1.21796 * 120.00037 * 359.97438 * 24 23 22 26 26 O 1.21800 * 120.00138 * 180.02562 * 24 23 22 27 27 C 1.38209 * 120.00136 * 259.73061 * 19 2 1 28 28 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 29 29 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 30 30 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 31 31 H 0.96999 * 119.99694 * 264.99399 * 4 2 1 32 32 H 1.09000 * 109.47318 * 299.99141 * 7 5 4 33 33 H 1.09000 * 109.47161 * 59.99772 * 7 5 4 34 34 H 1.09004 * 109.46930 * 299.99901 * 8 7 5 35 35 H 1.09004 * 109.47059 * 59.99503 * 8 7 5 36 36 H 1.09004 * 109.46785 * 299.99692 * 9 8 7 37 37 H 1.09000 * 109.47196 * 59.99588 * 9 8 7 38 38 H 1.09000 * 109.46497 * 299.99439 * 10 9 8 39 39 H 1.08999 * 109.46623 * 59.99375 * 10 9 8 40 40 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 41 41 H 1.07992 * 120.00115 * 0.02562 * 20 19 2 42 42 H 1.08002 * 119.99321 * 180.02562 * 21 20 19 43 43 H 1.07997 * 120.00272 * 180.02562 * 22 21 20 44 44 H 1.08003 * 119.99855 * 359.97438 * 27 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8582 1.1584 -2.4118 7 6 2.6500 -0.7286 -3.5874 8 6 2.7007 0.2543 -4.7589 9 6 3.2107 -0.4669 -6.0081 10 6 3.2621 0.5162 -7.1794 11 6 3.7650 -0.1941 -8.4096 12 1 4.0226 -1.2418 -8.3609 13 6 3.8962 0.4936 -9.5975 14 7 3.5829 1.7695 -9.6567 15 14 4.5202 -0.3868 -11.1223 16 1 4.8012 -1.8074 -10.7936 17 1 3.4890 -0.3205 -12.1888 18 1 5.7659 0.2678 -11.5968 19 6 2.0324 -0.7103 1.2305 20 6 2.0668 -2.0921 1.2654 21 6 2.5281 -2.7435 2.3938 22 6 2.9545 -2.0135 3.4877 23 6 2.9200 -0.6322 3.4528 24 7 3.3771 0.1493 4.6238 25 8 3.7831 -0.4247 5.6183 26 8 3.3463 1.3666 4.5932 27 6 2.4639 0.0195 2.3219 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 2.2491 -1.6317 -1.1525 32 1 3.6494 -1.1203 -3.3979 33 1 1.9778 -1.5509 -3.8325 34 1 1.7012 0.6457 -4.9483 35 1 3.3726 1.0770 -4.5140 36 1 4.2102 -0.8586 -5.8189 37 1 2.5384 -1.2893 -6.2527 38 1 2.2628 0.9082 -7.3687 39 1 3.9345 1.3383 -6.9344 40 1 3.6756 2.2533 -10.4922 41 1 1.7341 -2.6622 0.4107 42 1 2.5553 -3.8228 2.4208 43 1 3.3153 -2.5225 4.3692 44 1 2.4415 1.0989 2.2928 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588151943.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:53 Heat of formation + Delta-G solvation = -62.989872 kcal Electronic energy + Delta-G solvation = -25201.479283 eV Core-core repulsion = 21313.257633 eV Total energy + Delta-G solvation = -3888.221650 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.31436 -41.38969 -40.28633 -37.75051 -37.05268 -36.43988 -34.61229 -33.21928 -32.95179 -31.47112 -30.36920 -27.75687 -27.46885 -25.38243 -24.09215 -23.81252 -22.33674 -21.71268 -21.28308 -20.03358 -19.76716 -18.65863 -18.42057 -18.14494 -17.52378 -17.25650 -16.84273 -16.49705 -16.16545 -15.62688 -15.53698 -15.00088 -14.80835 -14.58465 -14.49799 -13.95059 -13.62909 -13.53875 -13.44768 -13.26595 -13.18900 -12.86220 -12.82682 -12.75660 -12.37395 -12.33555 -12.30284 -12.14982 -12.13631 -12.08712 -11.36492 -11.35075 -11.15261 -10.83446 -10.62749 -10.55667 -10.40353 -10.15150 -8.18766 -6.30774 -1.31433 -0.16116 0.23333 0.31771 1.40650 1.41404 1.54775 1.64024 2.03096 2.28208 2.41960 3.09236 3.14142 3.41625 3.66968 3.77626 3.78640 3.92790 3.95173 4.07243 4.15184 4.20170 4.28063 4.52414 4.62889 4.67517 4.71085 4.73480 4.81805 4.87210 4.88605 4.93878 5.01751 5.11303 5.19127 5.21217 5.34632 5.36967 5.43115 5.45658 5.58613 5.79238 5.88977 6.25575 6.38389 6.50227 6.88393 7.25278 7.38976 8.93581 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026656 B = 0.001734 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.167174 B =16143.271307 C =16224.598557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.184 3.816 3 H 0.077 0.923 4 N -0.713 5.713 5 C 0.515 3.485 6 O -0.583 6.583 7 C -0.128 4.128 8 C -0.098 4.098 9 C -0.096 4.096 10 C 0.017 3.983 11 C -0.540 4.540 12 H 0.067 0.933 13 C -0.008 4.008 14 N -0.938 5.938 15 Si 0.969 3.031 16 H -0.256 1.256 17 H -0.279 1.279 18 H -0.280 1.280 19 C -0.087 4.087 20 C -0.048 4.048 21 C -0.095 4.095 22 C -0.054 4.054 23 C -0.061 4.061 24 N 0.029 4.971 25 O -0.164 6.164 26 O -0.203 6.203 27 C -0.055 4.055 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.418 0.582 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.043 0.957 35 H 0.040 0.960 36 H 0.060 0.940 37 H 0.063 0.937 38 H -0.015 1.015 39 H -0.017 1.017 40 H 0.262 0.738 41 H 0.178 0.822 42 H 0.192 0.808 43 H 0.167 0.833 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.014 -16.302 28.700 33.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.079 3.921 3 H 0.095 0.905 4 N -0.368 5.368 5 C 0.303 3.697 6 O -0.462 6.462 7 C -0.167 4.167 8 C -0.136 4.136 9 C -0.133 4.133 10 C -0.020 4.020 11 C -0.578 4.578 12 H 0.085 0.915 13 C -0.206 4.206 14 N -0.579 5.579 15 Si 0.794 3.206 16 H -0.180 1.180 17 H -0.205 1.205 18 H -0.206 1.206 19 C -0.089 4.089 20 C -0.066 4.066 21 C -0.113 4.113 22 C -0.073 4.073 23 C -0.144 4.144 24 N 0.543 4.457 25 O -0.382 6.382 26 O -0.410 6.410 27 C -0.075 4.075 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.103 0.897 31 H 0.257 0.743 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.003 0.997 39 H 0.001 0.999 40 H 0.071 0.929 41 H 0.195 0.805 42 H 0.209 0.791 43 H 0.185 0.815 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.448 -15.645 27.991 32.526 hybrid contribution 0.516 0.722 -0.474 1.006 sum -4.932 -14.923 27.518 31.690 Atomic orbital electron populations 1.22153 0.92814 1.03883 1.02551 1.19650 0.95101 0.96150 0.81186 0.90494 1.45975 1.67813 1.14765 1.08272 1.21201 0.76145 0.86811 0.85496 1.90723 1.51334 1.18508 1.85655 1.21685 1.05067 0.99498 0.90468 1.21255 1.00468 0.97725 0.94140 1.21447 1.00568 0.98022 0.93270 1.19078 0.94424 0.94687 0.93857 1.21797 1.43332 0.97069 0.95576 0.91464 1.26106 0.95815 0.95647 1.02983 1.70139 1.50052 1.10113 1.27560 0.85335 0.77785 0.79143 0.78377 1.17970 1.20528 1.20621 1.19795 1.00105 0.94842 0.94118 1.21889 0.92426 0.92647 0.99614 1.21684 0.96359 1.02901 0.90328 1.21498 0.94583 0.89516 1.01740 1.21266 1.12692 0.92953 0.87456 1.44032 0.97641 1.01368 1.02611 1.94500 1.47809 1.72512 1.23385 1.94569 1.60752 0.96550 1.89154 1.20902 0.93862 1.02213 0.90513 0.90760 0.93293 0.89748 0.74271 0.86270 0.85789 0.93819 0.94127 0.92100 0.91851 0.99699 0.99864 0.92904 0.80498 0.79129 0.81547 0.83792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.46 71.98 0.68 -1.23 16 2 C 0.18 2.44 2.78 44.25 0.12 2.57 16 3 H 0.08 1.48 7.44 -2.39 -0.02 1.46 16 4 N -0.71 -9.03 5.03 -446.10 -2.24 -11.27 16 5 C 0.52 11.63 7.79 87.66 0.68 12.32 16 6 O -0.58 -19.65 15.65 -3.03 -0.05 -19.69 16 7 C -0.13 -2.65 5.70 29.85 0.17 -2.48 16 8 C -0.10 -3.30 4.50 30.59 0.14 -3.17 16 9 C -0.10 -3.72 5.15 30.59 0.16 -3.56 16 10 C 0.02 0.90 4.97 29.85 0.15 1.05 16 11 C -0.54 -30.84 9.11 25.60 0.23 -30.60 16 12 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 13 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 14 N -0.94 -58.68 13.29 21.45 0.28 -58.40 16 15 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 16 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 C -0.09 -0.79 4.95 -19.87 -0.10 -0.89 16 20 C -0.05 -0.11 9.06 22.27 0.20 0.09 16 21 C -0.09 -0.11 10.05 22.27 0.22 0.11 16 22 C -0.05 -0.40 9.56 22.27 0.21 -0.19 16 23 C -0.06 -0.88 6.85 36.38 0.25 -0.63 16 24 N 0.03 0.63 4.45 -46.46 -0.21 0.42 16 25 O -0.16 -3.61 18.45 18.89 0.35 -3.26 16 26 O -0.20 -5.13 18.45 18.89 0.35 -4.78 16 27 C -0.06 -0.75 9.18 22.27 0.20 -0.54 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.42 1.82 6.87 -92.71 -0.64 1.18 16 32 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.12 1.83 8.14 -2.39 -0.02 1.82 16 34 H 0.04 1.63 8.10 -2.38 -0.02 1.61 16 35 H 0.04 1.54 8.10 -2.39 -0.02 1.52 16 36 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 37 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 38 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 39 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 40 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 41 H 0.18 -0.75 6.92 -2.91 -0.02 -0.77 16 42 H 0.19 -1.18 8.06 -2.91 -0.02 -1.20 16 43 H 0.17 0.82 7.61 -2.91 -0.02 0.80 16 44 H 0.14 2.19 7.59 -2.91 -0.02 2.17 16 Total: -1.00 -83.01 380.75 4.67 -78.34 By element: Atomic # 1 Polarization: -0.87 SS G_CDS: 0.37 Total: -0.50 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 3.79 Total: -27.19 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: -2.16 Total: -69.24 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: 0.65 Total: -27.73 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -83.01 4.67 -78.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588151943.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.348 kcal (2) G-P(sol) polarization free energy of solvation -83.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds