Wall clock time and date at job start Tue Mar 31 2020 13:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47126 * 2 1 4 4 N 1.46502 * 109.47137 * 119.99120 * 2 1 3 5 5 C 1.34778 * 120.00094 * 275.00271 * 4 2 1 6 6 O 1.21587 * 120.00083 * 0.02562 * 5 4 2 7 7 N 1.34783 * 120.00138 * 179.97438 * 5 4 2 8 8 C 1.47028 * 125.64488 * 359.97438 * 7 5 4 9 9 C 1.54320 * 107.26701 * 178.99212 * 8 7 5 10 10 C 1.55153 * 102.94383 * 337.80525 * 9 8 7 11 11 O 1.42895 * 111.00660 * 277.38826 * 10 9 8 12 12 C 1.50702 * 111.00367 * 153.57571 * 10 9 8 13 13 H 1.08002 * 120.00299 * 3.18452 * 12 10 9 14 14 C 1.37884 * 119.99942 * 182.90010 * 12 10 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 10 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 10 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 C 1.47463 * 125.62945 * 179.97438 * 7 5 4 21 21 C 1.50692 * 109.47440 * 239.99117 * 2 1 3 22 22 C 1.38288 * 119.97431 * 280.00006 * 21 2 1 23 23 C 1.38247 * 120.11234 * 179.97438 * 22 21 2 24 24 C 1.38163 * 120.05754 * 0.02562 * 23 22 21 25 25 C 1.38715 * 119.94210 * 359.97331 * 24 23 22 26 26 O 1.35898 * 120.05603 * 180.02562 * 25 24 23 27 27 C 1.38130 * 119.97245 * 99.72759 * 21 2 1 28 28 H 1.09000 * 109.47135 * 300.00435 * 1 2 3 29 29 H 1.08997 * 109.46827 * 60.00752 * 1 2 3 30 30 H 1.09003 * 109.46663 * 180.02562 * 1 2 3 31 31 H 0.96998 * 120.00213 * 94.99791 * 4 2 1 32 32 H 1.09000 * 109.88086 * 59.57636 * 8 7 5 33 33 H 1.09003 * 109.87956 * 298.40624 * 8 7 5 34 34 H 1.09004 * 110.71836 * 219.43859 * 9 8 7 35 35 H 1.09006 * 110.72351 * 96.16930 * 9 8 7 36 36 H 0.96695 * 114.00567 * 176.81707 * 11 10 9 37 37 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 38 38 H 1.08998 * 110.34826 * 85.23635 * 20 7 5 39 39 H 1.09002 * 110.40574 * 322.89852 * 20 7 5 40 40 H 1.08001 * 119.94505 * 359.97438 * 22 21 2 41 41 H 1.08000 * 119.96983 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.03071 * 180.02562 * 24 23 22 43 43 H 0.96696 * 114.00732 * 90.00056 * 26 25 24 44 44 H 1.08000 * 120.02602 * 359.97438 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6904 1.1963 5 6 2.1470 -0.0179 2.3572 6 8 1.8574 1.1617 2.4118 7 7 2.5958 -0.6532 3.4579 8 6 2.9786 -2.0708 3.5328 9 6 3.4508 -2.3421 4.9767 10 6 3.8429 -0.9297 5.4853 11 8 5.1628 -0.5814 5.0630 12 6 3.7176 -0.8414 6.9845 13 1 3.4395 -1.7149 7.5556 14 6 3.9639 0.3531 7.6277 15 7 4.3026 1.4167 6.9323 16 14 3.8161 0.4606 9.4867 17 1 5.1273 0.1423 10.1067 18 1 3.4070 1.8351 9.8721 19 1 2.7964 -0.5101 9.9593 20 6 2.7840 -0.0412 4.7863 21 6 2.0324 -0.7105 -1.2303 22 6 2.0666 -2.0926 -1.2644 23 6 2.5265 -2.7474 -2.3917 24 6 2.9536 -2.0221 -3.4874 25 6 2.9203 -0.6357 -3.4557 26 8 3.3394 0.0800 -4.5322 27 6 2.4531 0.0191 -2.3251 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.2490 -1.6316 1.1529 32 1 3.7896 -2.2732 2.8333 33 1 2.1193 -2.6996 3.2995 34 1 4.3144 -3.0073 4.9814 35 1 2.6402 -2.7566 5.5762 36 1 5.4338 0.3118 5.3156 37 1 4.4754 2.2572 7.3848 38 1 1.8487 -0.0547 5.3458 39 1 3.1522 0.9798 4.6856 40 1 1.7335 -2.6614 -0.4088 41 1 2.5526 -3.8268 -2.4157 42 1 3.3124 -2.5341 -4.3680 43 1 2.6405 0.2749 -5.1714 44 1 2.4216 1.0983 -2.2998 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591958136.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:09 Heat of formation + Delta-G solvation = -117.640834 kcal Electronic energy + Delta-G solvation = -27071.758494 eV Core-core repulsion = 23181.167001 eV Total energy + Delta-G solvation = -3890.591493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.51280 -40.66674 -39.23277 -38.04201 -36.10853 -36.04131 -34.18173 -32.93709 -31.57934 -30.74113 -29.99728 -29.46984 -26.98257 -25.07979 -24.12450 -23.61088 -21.97956 -21.43548 -20.90168 -19.53448 -19.06720 -18.65147 -17.48311 -17.24574 -17.02875 -16.78794 -16.46672 -16.16540 -16.10154 -15.53355 -15.19163 -14.88496 -14.76693 -14.61825 -14.51481 -14.12168 -13.73877 -13.50016 -13.33865 -13.21936 -13.08784 -12.97939 -12.83611 -12.53776 -12.41641 -12.30165 -12.25252 -12.21822 -12.08341 -11.41751 -11.32024 -11.19396 -10.64638 -10.34343 -10.27100 -9.84761 -9.59050 -9.33379 -8.24074 -6.41200 0.22780 0.32264 1.42629 1.44699 1.54540 1.67428 2.15313 2.38949 2.65415 3.01918 3.05797 3.27047 3.57766 3.81110 3.91617 4.10536 4.17627 4.18828 4.24349 4.25475 4.33956 4.35812 4.57592 4.61817 4.69797 4.77515 4.84955 4.91954 4.99576 5.07101 5.10858 5.20467 5.30244 5.35483 5.40387 5.43769 5.44229 5.47116 5.63832 5.77368 5.86883 6.04580 6.17344 6.66304 6.86068 7.05896 7.30191 7.37041 7.56810 8.81322 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025688 B = 0.002731 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.761118 B =10251.058991 C =10458.970314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.200 3.800 3 H 0.068 0.932 4 N -0.724 5.724 5 C 0.712 3.288 6 O -0.642 6.642 7 N -0.633 5.633 8 C 0.106 3.894 9 C -0.110 4.110 10 C 0.231 3.769 11 O -0.589 6.589 12 C -0.554 4.554 13 H 0.071 0.929 14 C 0.024 3.976 15 N -0.918 5.918 16 Si 0.966 3.034 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.264 1.264 20 C 0.128 3.872 21 C -0.078 4.078 22 C -0.126 4.126 23 C -0.094 4.094 24 C -0.149 4.149 25 C 0.101 3.899 26 O -0.512 6.512 27 C -0.150 4.150 28 H 0.040 0.960 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.407 0.593 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.374 0.626 37 H 0.269 0.731 38 H 0.041 0.959 39 H 0.039 0.961 40 H 0.140 0.860 41 H 0.158 0.842 42 H 0.147 0.853 43 H 0.411 0.589 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.805 -10.614 -20.364 23.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.095 3.905 3 H 0.086 0.914 4 N -0.382 5.382 5 C 0.414 3.586 6 O -0.525 6.525 7 N -0.369 5.369 8 C -0.016 4.016 9 C -0.148 4.148 10 C 0.190 3.810 11 O -0.398 6.398 12 C -0.592 4.592 13 H 0.089 0.911 14 C -0.177 4.177 15 N -0.557 5.557 16 Si 0.791 3.209 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.188 1.188 20 C 0.004 3.996 21 C -0.079 4.079 22 C -0.144 4.144 23 C -0.112 4.112 24 C -0.167 4.167 25 C 0.057 3.943 26 O -0.325 6.325 27 C -0.169 4.169 28 H 0.060 0.940 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.244 0.756 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.224 0.776 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.157 0.843 41 H 0.175 0.825 42 H 0.165 0.835 43 H 0.270 0.730 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.484 -10.186 -20.361 23.672 hybrid contribution -0.206 1.203 1.158 1.682 sum -6.690 -8.982 -19.204 22.231 Atomic orbital electron populations 1.22103 0.93114 1.03229 1.02255 1.19599 0.94885 0.95391 0.80591 0.91405 1.45088 1.71637 1.13963 1.07481 1.15710 0.78283 0.84153 0.80470 1.90843 1.59941 1.16537 1.85163 1.47867 1.67466 1.12441 1.09165 1.22131 1.00118 0.80764 0.98557 1.22596 1.01479 0.96438 0.94243 1.19883 0.79194 0.90614 0.91261 1.86067 1.33966 1.37863 1.81857 1.21822 1.48229 0.96781 0.92413 0.91077 1.25865 0.93378 0.95126 1.03336 1.69788 1.46915 1.01461 1.37528 0.85437 0.78625 0.77281 0.79577 1.20045 1.21302 1.18793 1.22678 0.98864 0.97885 0.80199 1.19686 0.99519 0.94596 0.94073 1.21183 1.00627 0.93007 0.99610 1.21349 0.96495 1.01495 0.91834 1.21724 1.01258 0.92861 1.00892 1.18533 0.97237 0.90343 0.88189 1.84787 1.40009 1.74409 1.33304 1.21353 1.00673 1.00772 0.94078 0.94038 0.89912 0.90597 0.75571 0.91165 0.88897 0.89653 0.89077 0.77640 0.92173 0.94021 0.94266 0.84273 0.82477 0.83522 0.73031 0.85572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 9.46 71.98 0.68 -2.68 16 2 C 0.20 5.24 2.77 44.24 0.12 5.36 16 3 H 0.07 2.17 7.44 -2.39 -0.02 2.15 16 4 N -0.72 -21.37 4.99 -461.41 -2.30 -23.67 16 5 C 0.71 29.34 8.45 179.05 1.51 30.85 16 6 O -0.64 -32.38 16.26 -3.99 -0.06 -32.45 16 7 N -0.63 -26.22 3.33 -829.66 -2.76 -28.99 16 8 C 0.11 3.40 6.15 86.73 0.53 3.94 16 9 C -0.11 -4.08 6.13 31.78 0.19 -3.88 16 10 C 0.23 11.22 0.88 -10.15 -0.01 11.22 16 11 O -0.59 -30.86 13.17 -148.98 -1.96 -32.82 16 12 C -0.55 -28.81 8.25 25.60 0.21 -28.60 16 13 H 0.07 3.54 7.78 -2.91 -0.02 3.52 16 14 C 0.02 1.24 5.29 84.66 0.45 1.69 16 15 N -0.92 -50.86 10.69 21.45 0.23 -50.63 16 16 Si 0.97 41.99 29.54 68.60 2.03 44.01 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 18 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 20 C 0.13 6.38 5.51 86.84 0.48 6.86 16 21 C -0.08 -1.63 4.95 -19.88 -0.10 -1.73 16 22 C -0.13 -2.07 9.05 22.28 0.20 -1.86 16 23 C -0.09 -1.26 10.04 22.25 0.22 -1.04 16 24 C -0.15 -2.21 9.99 22.37 0.22 -1.98 16 25 C 0.10 1.85 6.71 22.51 0.15 2.00 16 26 O -0.51 -8.30 13.50 -92.40 -1.25 -9.54 16 27 C -0.15 -3.11 9.61 22.37 0.21 -2.90 16 28 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.41 9.50 5.85 -92.71 -0.54 8.95 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.08 2.97 8.14 -2.38 -0.02 2.95 16 35 H 0.09 3.11 8.03 -2.38 -0.02 3.09 16 36 H 0.37 20.79 7.24 -74.06 -0.54 20.25 16 37 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 38 H 0.04 2.16 8.03 -2.39 -0.02 2.14 16 39 H 0.04 2.28 7.48 -2.39 -0.02 2.26 16 40 H 0.14 1.80 6.91 -2.91 -0.02 1.78 16 41 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 43 H 0.41 2.38 9.06 -74.06 -0.67 1.71 16 44 H 0.13 2.62 8.04 -2.91 -0.02 2.59 16 Total: -1.00 -72.29 365.18 -1.69 -73.98 By element: Atomic # 1 Polarization: 43.58 SS G_CDS: -0.70 Total: 42.87 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 5.09 Total: 17.23 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -4.83 Total: -103.29 kcal Atomic # 8 Polarization: -71.54 SS G_CDS: -3.27 Total: -74.81 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -72.29 -1.69 -73.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591958136.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.661 kcal (2) G-P(sol) polarization free energy of solvation -72.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds