Wall clock time and date at job start Tue Mar 31 2020 13:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46810 * 2 1 4 4 N 1.46494 * 109.46896 * 240.00117 * 2 1 3 5 5 C 1.34777 * 120.00570 * 84.99821 * 4 2 1 6 6 O 1.21589 * 119.99234 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00637 * 179.97438 * 5 4 2 8 8 C 1.47426 * 125.64537 * 359.69699 * 7 5 4 9 9 C 1.55129 * 104.72440 * 155.81550 * 8 7 5 10 10 C 1.55158 * 101.48388 * 37.29137 * 9 8 7 11 11 O 1.42904 * 110.71735 * 82.70253 * 10 9 8 12 12 C 1.50706 * 110.87164 * 205.89939 * 10 9 8 13 13 H 1.07992 * 120.00191 * 355.06353 * 12 10 9 14 14 C 1.37879 * 119.99436 * 175.06884 * 12 10 9 15 15 N 1.31511 * 120.00476 * 359.97438 * 14 12 10 16 16 Si 1.86808 * 119.99519 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46797 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47036 * 119.99590 * 16 14 12 19 19 H 1.48493 * 109.47076 * 239.99898 * 16 14 12 20 20 C 1.47021 * 125.65173 * 179.97438 * 7 5 4 21 21 C 1.50694 * 109.47215 * 119.99838 * 2 1 3 22 22 C 1.38295 * 119.97322 * 80.00102 * 21 2 1 23 23 C 1.38242 * 120.11401 * 179.74918 * 22 21 2 24 24 C 1.38169 * 120.05494 * 359.94904 * 23 22 21 25 25 C 1.38711 * 119.94094 * 0.03192 * 24 23 22 26 26 O 1.35906 * 120.04992 * 180.02562 * 25 24 23 27 27 C 1.38122 * 119.97595 * 259.72573 * 21 2 1 28 28 H 1.09007 * 109.47088 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47067 * 299.99895 * 1 2 3 30 30 H 1.08996 * 109.47351 * 60.00259 * 1 2 3 31 31 H 0.97006 * 120.00084 * 264.99438 * 4 2 1 32 32 H 1.09001 * 110.36707 * 274.74395 * 8 7 5 33 33 H 1.08998 * 110.37153 * 37.06449 * 8 7 5 34 34 H 1.09001 * 111.19399 * 279.19402 * 9 8 7 35 35 H 1.08996 * 110.90929 * 155.27357 * 9 8 7 36 36 H 0.96699 * 114.00089 * 185.02737 * 11 10 9 37 37 H 0.96997 * 119.99880 * 180.02562 * 15 14 12 38 38 H 1.08992 * 109.88210 * 300.44652 * 20 7 5 39 39 H 1.08999 * 109.87876 * 61.45643 * 20 7 5 40 40 H 1.07997 * 119.93892 * 359.72353 * 22 21 2 41 41 H 1.07998 * 119.97158 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.02732 * 179.97438 * 24 23 22 43 43 H 0.96703 * 113.99508 * 90.00156 * 26 25 24 44 44 H 1.08002 * 120.02294 * 0.25466 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3572 6 8 1.8582 1.1615 -2.4116 7 7 2.5967 -0.6535 -3.4575 8 6 2.9880 -2.0730 -3.5305 9 6 2.8171 -2.4527 -5.0248 10 6 3.2880 -1.1532 -5.7296 11 8 4.7130 -1.1216 -5.8323 12 6 2.6543 -1.0206 -7.0905 13 1 2.0369 -1.8171 -7.4786 14 6 2.8629 0.1177 -7.8401 15 7 3.6144 1.0879 -7.3673 16 14 2.0768 0.2824 -9.5267 17 1 1.2843 -0.9376 -9.8246 18 1 1.1843 1.4692 -9.5430 19 1 3.1372 0.4463 -10.5531 20 6 2.7836 -0.0442 -4.7824 21 6 2.0324 -0.7103 1.2304 22 6 2.0666 -2.0924 1.2647 23 6 2.5317 -2.7470 2.3900 24 6 2.9647 -2.0214 3.4832 25 6 2.9317 -0.6351 3.4511 26 8 3.3576 0.0809 4.5250 27 6 2.4636 0.0195 2.3209 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.2490 -1.6318 -1.1526 32 1 4.0260 -2.1967 -3.2215 33 1 2.3311 -2.6802 -2.9077 34 1 1.7749 -2.6689 -5.2598 35 1 3.4580 -3.2942 -5.2880 36 1 5.0630 -0.2966 -6.1955 37 1 3.7608 1.8888 -7.8945 38 1 1.8351 0.3510 -5.1458 39 1 3.5199 0.7572 -4.7212 40 1 1.7289 -2.6613 0.4111 41 1 2.5570 -3.8264 2.4145 42 1 3.3276 -2.5332 4.3623 43 1 4.2993 0.2998 4.5033 44 1 2.4370 1.0988 2.2935 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591958137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:13 Heat of formation + Delta-G solvation = -92.825789 kcal Electronic energy + Delta-G solvation = -27031.543202 eV Core-core repulsion = 23142.027770 eV Total energy + Delta-G solvation = -3889.515432 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.38021 -39.52638 -37.80004 -37.02099 -34.99728 -34.26659 -32.22312 -31.75317 -30.30248 -29.70044 -29.04612 -27.71447 -25.16659 -23.97753 -23.03877 -22.58311 -21.04352 -19.66650 -19.47667 -18.48270 -17.53637 -17.07779 -16.63333 -16.19407 -15.59800 -15.41423 -15.16325 -14.88283 -14.59419 -14.26944 -14.05743 -13.76269 -13.49566 -13.00361 -12.90207 -12.87217 -12.51291 -12.39562 -12.10367 -12.03865 -11.73593 -11.66889 -11.45400 -11.32210 -11.05909 -10.81273 -10.67714 -10.65721 -10.46497 -10.17545 -9.63421 -9.32119 -9.18768 -8.94140 -8.82869 -8.68171 -8.31391 -7.77624 -6.27842 -4.36318 0.93857 1.02605 3.02749 3.21008 3.29671 3.32846 3.38392 3.72295 3.90195 4.26854 4.41253 4.43184 4.61232 4.82914 4.98389 5.00176 5.17104 5.23522 5.32300 5.35874 5.51678 5.61996 5.67180 5.70552 5.76045 5.87408 5.99643 6.06490 6.09003 6.11904 6.21238 6.26402 6.49901 6.50772 6.71007 6.76329 6.88613 6.98167 7.25946 7.31893 7.34577 7.62580 7.73736 8.03990 8.51020 8.67742 9.10912 9.29684 9.38439 10.79977 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026330 B = 0.002715 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.180314 B =10309.840920 C =10599.041903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.201 3.799 3 H 0.096 0.904 4 N -0.747 5.747 5 C 0.717 3.283 6 O -0.595 6.595 7 N -0.630 5.630 8 C 0.103 3.897 9 C -0.115 4.115 10 C 0.247 3.753 11 O -0.585 6.585 12 C -0.536 4.536 13 H 0.067 0.933 14 C 0.070 3.930 15 N -0.893 5.893 16 Si 0.903 3.097 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.123 3.877 21 C -0.068 4.068 22 C -0.122 4.122 23 C -0.099 4.099 24 C -0.148 4.148 25 C 0.106 3.894 26 O -0.500 6.500 27 C -0.133 4.133 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.392 0.608 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.382 0.618 37 H 0.269 0.731 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.391 0.609 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.103 -6.805 19.058 20.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.096 3.904 3 H 0.114 0.886 4 N -0.404 5.404 5 C 0.419 3.581 6 O -0.474 6.474 7 N -0.367 5.367 8 C -0.020 4.020 9 C -0.153 4.153 10 C 0.207 3.793 11 O -0.394 6.394 12 C -0.575 4.575 13 H 0.085 0.915 14 C -0.133 4.133 15 N -0.532 5.532 16 Si 0.731 3.269 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C 0.001 3.999 21 C -0.069 4.069 22 C -0.140 4.140 23 C -0.117 4.117 24 C -0.167 4.167 25 C 0.062 3.938 26 O -0.311 6.311 27 C -0.152 4.152 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.227 0.773 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.232 0.768 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.145 0.855 43 H 0.247 0.753 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.914 -6.329 19.432 20.526 hybrid contribution 0.273 0.357 -1.155 1.239 sum -1.642 -5.972 18.277 19.298 Atomic orbital electron populations 1.22191 0.94359 1.02286 1.02810 1.19543 0.93974 0.96508 0.80408 0.88557 1.45277 1.72990 1.13492 1.08676 1.15487 0.78560 0.84559 0.79520 1.90885 1.57994 1.14268 1.84272 1.47969 1.67184 1.11342 1.10168 1.22280 0.98868 0.82100 0.98797 1.22756 1.01285 0.99215 0.92091 1.19517 0.79548 0.88310 0.91922 1.86103 1.22245 1.43921 1.87124 1.21519 1.31452 1.03354 1.01153 0.91518 1.25077 0.94414 0.95189 0.98636 1.69705 1.37943 1.07392 1.38121 0.86357 0.79133 0.78206 0.83253 1.19614 1.20777 1.20765 1.22862 1.01390 0.97642 0.77992 1.19907 0.97954 0.93840 0.95157 1.20992 1.00591 0.93789 0.98641 1.21019 0.97917 1.00049 0.92724 1.21431 1.02561 0.93353 0.99349 1.18417 0.99033 0.89718 0.86614 1.84819 1.30554 1.74168 1.41533 1.21287 1.00902 1.00755 0.92232 0.92449 0.91753 0.91151 0.77294 0.91992 0.92749 0.90467 0.90631 0.76758 0.92060 0.91752 0.91884 0.85744 0.85369 0.85470 0.75294 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.46 37.16 0.35 -1.54 16 2 C 0.20 2.61 2.78 -69.09 -0.19 2.41 16 3 H 0.10 1.41 7.43 -51.93 -0.39 1.02 16 4 N -0.75 -11.01 4.99 -59.82 -0.30 -11.31 16 5 C 0.72 14.28 8.45 -86.92 -0.73 13.55 16 6 O -0.60 -14.12 16.33 5.29 0.09 -14.03 16 7 N -0.63 -12.88 3.32 -176.11 -0.59 -13.46 16 8 C 0.10 1.75 6.58 -2.41 -0.02 1.74 16 9 C -0.12 -2.24 6.24 -24.46 -0.15 -2.39 16 10 C 0.25 5.90 0.85 -89.94 -0.08 5.83 16 11 O -0.59 -14.52 13.07 -35.23 -0.46 -14.98 16 12 C -0.54 -13.90 8.13 -34.44 -0.28 -14.18 16 13 H 0.07 1.70 7.78 -52.49 -0.41 1.30 16 14 C 0.07 1.83 5.28 -17.82 -0.09 1.73 16 15 N -0.89 -23.75 10.96 55.43 0.61 -23.14 16 16 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 C 0.12 2.98 5.23 -3.07 -0.02 2.97 16 21 C -0.07 -0.74 4.95 -104.65 -0.52 -1.25 16 22 C -0.12 -1.15 9.05 -39.56 -0.36 -1.51 16 23 C -0.10 -0.83 10.04 -39.61 -0.40 -1.23 16 24 C -0.15 -1.29 9.99 -39.43 -0.39 -1.69 16 25 C 0.11 1.03 6.70 -39.22 -0.26 0.77 16 26 O -0.50 -4.32 13.50 -19.44 -0.26 -4.59 16 27 C -0.13 -1.39 9.61 -39.44 -0.38 -1.77 16 28 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.39 4.88 5.34 -40.82 -0.22 4.66 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.73 7.29 -51.93 -0.38 0.35 16 34 H 0.08 1.45 8.04 -51.93 -0.42 1.03 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.38 9.75 7.45 45.56 0.34 10.08 16 37 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 38 H 0.06 1.71 7.81 -51.93 -0.41 1.30 16 39 H 0.06 1.68 7.92 -51.93 -0.41 1.27 16 40 H 0.12 1.03 6.92 -52.49 -0.36 0.67 16 41 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 42 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 43 H 0.39 1.57 9.06 45.56 0.41 1.98 16 44 H 0.13 1.28 8.03 -52.49 -0.42 0.86 16 LS Contribution 364.61 15.07 5.49 5.49 Total: -1.00 -31.61 364.61 -8.71 -40.32 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -4.75 Total: 16.87 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -3.52 Total: 3.43 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -0.28 Total: -47.91 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -0.64 Total: -33.60 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.61 -8.71 -40.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591958137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.503 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds