Wall clock time and date at job start Tue Mar 31 2020 13:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.46810 * 2 1 4 4 N 1.46494 * 109.46896 * 240.00117 * 2 1 3 5 5 C 1.34777 * 120.00570 * 84.99821 * 4 2 1 6 6 O 1.21589 * 119.99234 * 0.02562 * 5 4 2 7 7 N 1.34771 * 120.00637 * 179.97438 * 5 4 2 8 8 C 1.47426 * 125.64537 * 359.69699 * 7 5 4 9 9 C 1.55129 * 104.72440 * 155.81550 * 8 7 5 10 10 C 1.55158 * 101.48388 * 37.29137 * 9 8 7 11 11 O 1.42904 * 110.71735 * 82.70253 * 10 9 8 12 12 C 1.50706 * 110.87164 * 205.89939 * 10 9 8 13 13 H 1.07992 * 120.00191 * 355.06353 * 12 10 9 14 14 C 1.37879 * 119.99436 * 175.06884 * 12 10 9 15 15 N 1.31511 * 120.00476 * 359.97438 * 14 12 10 16 16 Si 1.86808 * 119.99519 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46797 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47036 * 119.99590 * 16 14 12 19 19 H 1.48493 * 109.47076 * 239.99898 * 16 14 12 20 20 C 1.47021 * 125.65173 * 179.97438 * 7 5 4 21 21 C 1.50694 * 109.47215 * 119.99838 * 2 1 3 22 22 C 1.38295 * 119.97322 * 80.00102 * 21 2 1 23 23 C 1.38242 * 120.11401 * 179.74918 * 22 21 2 24 24 C 1.38169 * 120.05494 * 359.94904 * 23 22 21 25 25 C 1.38711 * 119.94094 * 0.03192 * 24 23 22 26 26 O 1.35906 * 120.04992 * 180.02562 * 25 24 23 27 27 C 1.38122 * 119.97595 * 259.72573 * 21 2 1 28 28 H 1.09007 * 109.47088 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47067 * 299.99895 * 1 2 3 30 30 H 1.08996 * 109.47351 * 60.00259 * 1 2 3 31 31 H 0.97006 * 120.00084 * 264.99438 * 4 2 1 32 32 H 1.09001 * 110.36707 * 274.74395 * 8 7 5 33 33 H 1.08998 * 110.37153 * 37.06449 * 8 7 5 34 34 H 1.09001 * 111.19399 * 279.19402 * 9 8 7 35 35 H 1.08996 * 110.90929 * 155.27357 * 9 8 7 36 36 H 0.96699 * 114.00089 * 185.02737 * 11 10 9 37 37 H 0.96997 * 119.99880 * 180.02562 * 15 14 12 38 38 H 1.08992 * 109.88210 * 300.44652 * 20 7 5 39 39 H 1.08999 * 109.87876 * 61.45643 * 20 7 5 40 40 H 1.07997 * 119.93892 * 359.72353 * 22 21 2 41 41 H 1.07998 * 119.97158 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.02732 * 179.97438 * 24 23 22 43 43 H 0.96703 * 113.99508 * 90.00156 * 26 25 24 44 44 H 1.08002 * 120.02294 * 0.25466 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3572 6 8 1.8582 1.1615 -2.4116 7 7 2.5967 -0.6535 -3.4575 8 6 2.9880 -2.0730 -3.5305 9 6 2.8171 -2.4527 -5.0248 10 6 3.2880 -1.1532 -5.7296 11 8 4.7130 -1.1216 -5.8323 12 6 2.6543 -1.0206 -7.0905 13 1 2.0369 -1.8171 -7.4786 14 6 2.8629 0.1177 -7.8401 15 7 3.6144 1.0879 -7.3673 16 14 2.0768 0.2824 -9.5267 17 1 1.2843 -0.9376 -9.8246 18 1 1.1843 1.4692 -9.5430 19 1 3.1372 0.4463 -10.5531 20 6 2.7836 -0.0442 -4.7824 21 6 2.0324 -0.7103 1.2304 22 6 2.0666 -2.0924 1.2647 23 6 2.5317 -2.7470 2.3900 24 6 2.9647 -2.0214 3.4832 25 6 2.9317 -0.6351 3.4511 26 8 3.3576 0.0809 4.5250 27 6 2.4636 0.0195 2.3209 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.2490 -1.6318 -1.1526 32 1 4.0260 -2.1967 -3.2215 33 1 2.3311 -2.6802 -2.9077 34 1 1.7749 -2.6689 -5.2598 35 1 3.4580 -3.2942 -5.2880 36 1 5.0630 -0.2966 -6.1955 37 1 3.7608 1.8888 -7.8945 38 1 1.8351 0.3510 -5.1458 39 1 3.5199 0.7572 -4.7212 40 1 1.7289 -2.6613 0.4111 41 1 2.5570 -3.8264 2.4145 42 1 3.3276 -2.5332 4.3623 43 1 4.2993 0.2998 4.5033 44 1 2.4370 1.0988 2.2935 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591958137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:12 Heat of formation + Delta-G solvation = -116.989180 kcal Electronic energy + Delta-G solvation = -27032.591006 eV Core-core repulsion = 23142.027770 eV Total energy + Delta-G solvation = -3890.563236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.53335 -40.67154 -39.26438 -38.04551 -36.12265 -36.05513 -34.22286 -32.91935 -31.53644 -30.74142 -30.00673 -29.46253 -26.98836 -25.08359 -24.16704 -23.61729 -22.00990 -21.40515 -20.94016 -19.53455 -19.04804 -18.67366 -17.50423 -17.28347 -17.13880 -16.68772 -16.40552 -16.18803 -16.02724 -15.62578 -15.19388 -14.89393 -14.76197 -14.68202 -14.45688 -14.09879 -13.85849 -13.50117 -13.32324 -13.24351 -13.12972 -12.87094 -12.85540 -12.53425 -12.49541 -12.34673 -12.25885 -12.23347 -12.07313 -11.41301 -11.30448 -11.16470 -10.65579 -10.33260 -10.28220 -9.85447 -9.58410 -9.41561 -8.25703 -6.41271 0.23152 0.32396 1.40099 1.43603 1.54129 1.64302 2.13225 2.38147 2.65210 3.01264 3.04802 3.25004 3.58413 3.80744 3.91367 4.06142 4.17704 4.18494 4.23728 4.25350 4.34218 4.38888 4.57246 4.58827 4.68821 4.73244 4.83878 4.91463 4.99512 5.06618 5.13971 5.19410 5.25054 5.34397 5.38719 5.43271 5.44571 5.51128 5.63395 5.75554 5.86641 6.03609 6.16677 6.65946 6.83905 7.04524 7.28178 7.35693 7.55292 8.80498 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026330 B = 0.002715 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.180314 B =10309.840920 C =10599.041903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.202 3.798 3 H 0.071 0.929 4 N -0.723 5.723 5 C 0.712 3.288 6 O -0.642 6.642 7 N -0.635 5.635 8 C 0.107 3.893 9 C -0.110 4.110 10 C 0.232 3.768 11 O -0.587 6.587 12 C -0.554 4.554 13 H 0.068 0.932 14 C 0.024 3.976 15 N -0.916 5.916 16 Si 0.963 3.037 17 H -0.264 1.264 18 H -0.285 1.285 19 H -0.278 1.278 20 C 0.142 3.858 21 C -0.077 4.077 22 C -0.126 4.126 23 C -0.094 4.094 24 C -0.149 4.149 25 C 0.101 3.899 26 O -0.511 6.511 27 C -0.149 4.149 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.407 0.593 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.375 0.625 37 H 0.269 0.731 38 H 0.029 0.971 39 H 0.026 0.974 40 H 0.140 0.860 41 H 0.157 0.843 42 H 0.147 0.853 43 H 0.410 0.590 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.402 -9.731 20.608 22.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.097 3.903 3 H 0.089 0.911 4 N -0.381 5.381 5 C 0.414 3.586 6 O -0.524 6.524 7 N -0.372 5.372 8 C -0.015 4.015 9 C -0.147 4.147 10 C 0.192 3.808 11 O -0.394 6.394 12 C -0.593 4.593 13 H 0.086 0.914 14 C -0.177 4.177 15 N -0.555 5.555 16 Si 0.788 3.212 17 H -0.188 1.188 18 H -0.211 1.211 19 H -0.203 1.203 20 C 0.018 3.982 21 C -0.078 4.078 22 C -0.144 4.144 23 C -0.112 4.112 24 C -0.167 4.167 25 C 0.056 3.944 26 O -0.325 6.325 27 C -0.168 4.168 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.245 0.755 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.224 0.776 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.044 0.956 40 H 0.157 0.843 41 H 0.175 0.825 42 H 0.164 0.836 43 H 0.269 0.731 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.198 -9.319 21.031 23.107 hybrid contribution 0.397 1.286 -1.531 2.038 sum -1.801 -8.033 19.500 21.166 Atomic orbital electron populations 1.22123 0.93539 1.03185 1.02143 1.19575 0.94609 0.95541 0.80601 0.91066 1.45078 1.71627 1.13975 1.07379 1.15695 0.78233 0.84156 0.80483 1.90850 1.59813 1.16588 1.85154 1.47894 1.67493 1.12743 1.09033 1.22460 1.00594 0.80305 0.98142 1.22753 1.01789 0.97254 0.92937 1.19732 0.78863 0.90639 0.91554 1.86093 1.22944 1.43390 1.87011 1.21858 1.31650 1.03453 1.02307 0.91403 1.25827 0.94925 0.95018 1.01908 1.69816 1.38849 1.07673 1.39159 0.85432 0.78278 0.78073 0.79401 1.18766 1.21136 1.20347 1.22336 0.98295 0.97145 0.80385 1.19669 0.99485 0.94571 0.94087 1.21186 1.00516 0.93012 0.99734 1.21347 0.96489 1.01488 0.91834 1.21724 1.01870 0.92912 1.00226 1.18527 0.99026 0.90386 0.86417 1.84767 1.32382 1.74201 1.41117 1.21349 1.01724 1.00793 0.92888 0.90681 0.90196 0.94018 0.75455 0.91106 0.87947 0.89731 0.89060 0.77640 0.92177 0.95275 0.95555 0.84255 0.82500 0.83562 0.73111 0.85531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.46 71.98 0.68 -2.86 16 2 C 0.20 5.14 2.78 44.25 0.12 5.26 16 3 H 0.07 2.18 7.43 -2.39 -0.02 2.16 16 4 N -0.72 -20.44 4.99 -461.44 -2.30 -22.74 16 5 C 0.71 28.62 8.45 179.06 1.51 30.14 16 6 O -0.64 -31.80 16.33 -4.00 -0.07 -31.86 16 7 N -0.63 -25.90 3.32 -829.34 -2.76 -28.66 16 8 C 0.11 3.36 6.58 86.93 0.57 3.93 16 9 C -0.11 -4.03 6.24 32.06 0.20 -3.83 16 10 C 0.23 11.17 0.85 -10.35 -0.01 11.16 16 11 O -0.59 -29.42 13.07 -148.98 -1.95 -31.37 16 12 C -0.55 -28.97 8.13 25.60 0.21 -28.77 16 13 H 0.07 3.44 7.78 -2.91 -0.02 3.42 16 14 C 0.02 1.27 5.28 84.66 0.45 1.71 16 15 N -0.92 -50.31 10.96 21.45 0.24 -50.07 16 16 Si 0.96 42.26 29.54 68.60 2.03 44.28 16 17 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 18 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 19 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 20 C 0.14 7.15 5.23 86.73 0.45 7.61 16 21 C -0.08 -1.56 4.95 -19.88 -0.10 -1.66 16 22 C -0.13 -1.98 9.05 22.28 0.20 -1.78 16 23 C -0.09 -1.20 10.04 22.25 0.22 -0.98 16 24 C -0.15 -2.12 9.99 22.37 0.22 -1.90 16 25 C 0.10 1.77 6.70 22.50 0.15 1.92 16 26 O -0.51 -8.00 13.50 -92.49 -1.25 -9.25 16 27 C -0.15 -2.97 9.61 22.36 0.21 -2.76 16 28 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.41 8.90 5.34 -92.70 -0.50 8.41 16 32 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.10 2.27 7.29 -2.39 -0.02 2.25 16 34 H 0.08 2.98 8.04 -2.39 -0.02 2.96 16 35 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.37 19.76 7.45 -74.06 -0.55 19.21 16 37 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 38 H 0.03 1.63 7.81 -2.39 -0.02 1.61 16 39 H 0.03 1.48 7.92 -2.39 -0.02 1.46 16 40 H 0.14 1.71 6.92 -2.91 -0.02 1.69 16 41 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 42 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 43 H 0.41 2.63 9.06 -74.06 -0.67 1.96 16 44 H 0.13 2.52 8.03 -2.91 -0.02 2.50 16 Total: -1.00 -71.40 364.61 -1.62 -73.03 By element: Atomic # 1 Polarization: 40.11 SS G_CDS: -0.67 Total: 39.44 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 5.11 Total: 17.20 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -4.82 Total: -101.47 kcal Atomic # 8 Polarization: -69.22 SS G_CDS: -3.26 Total: -72.48 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -71.40 -1.62 -73.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591958137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.961 kcal (2) G-P(sol) polarization free energy of solvation -71.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds