Wall clock time and date at job start Tue Mar 31 2020 12:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47080 * 2 1 4 4 O 1.45206 * 109.46720 * 119.99578 * 2 1 3 5 5 C 1.34767 * 116.99738 * 150.00089 * 4 2 1 6 6 O 1.21529 * 119.99761 * 0.02562 * 5 4 2 7 7 C 1.47282 * 119.99984 * 179.97438 * 5 4 2 8 8 C 1.40037 * 120.61588 * 354.91256 * 7 5 4 9 9 C 1.38308 * 118.36407 * 179.97438 * 8 7 5 10 10 C 1.38394 * 119.51332 * 0.02562 * 9 8 7 11 11 N 1.31842 * 121.23486 * 0.02562 * 10 9 8 12 12 C 1.32428 * 121.77795 * 359.97438 * 11 10 9 13 13 N 1.38228 * 119.82686 * 179.97438 * 12 11 10 14 14 C 1.47897 * 111.00216 * 37.32154 * 13 12 11 15 15 C 1.53993 * 107.06016 * 214.15354 * 14 13 12 16 16 C 1.54595 * 105.13854 * 1.22454 * 15 14 13 17 17 O 1.42899 * 110.72570 * 263.59908 * 16 15 14 18 18 C 1.50701 * 110.72532 * 140.49289 * 16 15 14 19 19 H 1.08006 * 119.99895 * 241.45476 * 18 16 15 20 20 C 1.37874 * 119.99922 * 61.45220 * 18 16 15 21 21 N 1.31513 * 120.00162 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 120.00039 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47185 * 60.00208 * 22 20 18 24 24 H 1.48502 * 109.47333 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47136 * 300.00316 * 22 20 18 26 26 C 1.48535 * 111.00010 * 279.92209 * 13 12 11 27 27 H 1.09001 * 109.46928 * 300.00367 * 1 2 3 28 28 H 1.08997 * 109.46672 * 60.00269 * 1 2 3 29 29 H 1.08998 * 109.46830 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47413 * 239.99423 * 2 1 3 31 31 H 1.09000 * 109.47469 * 59.99457 * 3 2 1 32 32 H 1.09004 * 109.46782 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46919 * 299.99701 * 3 2 1 34 34 H 1.08004 * 120.81855 * 0.02562 * 8 7 5 35 35 H 1.07997 * 120.24499 * 180.02562 * 9 8 7 36 36 H 1.08000 * 119.38049 * 179.97438 * 10 9 8 37 37 H 1.08997 * 109.91513 * 333.50929 * 14 13 12 38 38 H 1.09006 * 109.91812 * 94.60569 * 14 13 12 39 39 H 1.09001 * 110.31115 * 120.13928 * 15 14 13 40 40 H 1.09003 * 110.31194 * 242.21132 * 15 14 13 41 41 H 0.96702 * 114.00096 * 298.54511 * 17 16 15 42 42 H 0.97003 * 120.00081 * 179.97438 * 21 20 18 43 43 H 1.08996 * 110.66773 * 278.15514 * 26 13 12 44 44 H 1.08998 * 110.66480 * 41.29251 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6844 1.1857 5 6 3.1983 -1.3195 1.0849 6 8 3.8101 -1.3013 0.0350 7 6 3.7518 -2.0346 2.2475 8 6 3.1124 -1.9751 3.4920 9 6 3.6723 -2.6648 4.5520 10 6 4.8368 -3.3867 4.3567 11 7 5.4248 -3.4299 3.1775 12 6 4.9322 -2.7887 2.1287 13 7 5.5822 -2.8612 0.9109 14 6 6.1465 -4.2105 0.6908 15 6 7.4587 -4.0288 -0.0944 16 6 7.6135 -2.5012 -0.2740 17 8 7.1173 -2.0890 -1.5491 18 6 9.0528 -2.0875 -0.1050 19 1 9.3295 -1.4061 0.6860 20 6 10.0162 -2.5789 -0.9601 21 7 9.6792 -3.4082 -1.9235 22 14 11.8003 -2.0667 -0.7503 23 1 12.2763 -2.4713 0.5970 24 1 12.6307 -2.7283 -1.7885 25 1 11.9122 -0.5928 -0.8927 26 6 6.7365 -1.9274 0.8672 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6767 1.9564 0.8899 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 2.2040 -1.4053 3.6206 35 1 3.2043 -2.6401 5.5250 36 1 5.2724 -3.9242 5.1860 37 1 6.3502 -4.6885 1.6490 38 1 5.4467 -4.8163 0.1151 39 1 8.2981 -4.4299 0.4736 40 1 7.3900 -4.5203 -1.0649 41 1 7.5838 -2.4832 -2.2989 42 1 10.3570 -3.7537 -2.5254 43 1 6.4052 -0.9172 0.6270 44 1 7.2784 -1.9412 1.8128 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591973102.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:10 Heat of formation + Delta-G solvation = -74.647401 kcal Electronic energy + Delta-G solvation = -28027.743643 eV Core-core repulsion = 24139.016484 eV Total energy + Delta-G solvation = -3888.727158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.84212 -39.65277 -37.92000 -36.40965 -34.74681 -33.31076 -32.31957 -32.04521 -31.21606 -28.43485 -28.00004 -27.37492 -25.09775 -24.54709 -23.15785 -21.85446 -20.47829 -20.29294 -19.50053 -17.92649 -17.35718 -16.77358 -16.40169 -16.13008 -15.72785 -14.84998 -14.80330 -14.57268 -14.23073 -14.17005 -13.87702 -13.61451 -13.21695 -13.05922 -12.75876 -12.64835 -12.41536 -12.30308 -12.10915 -11.85157 -11.74381 -11.52102 -11.23069 -11.01330 -10.93563 -10.63671 -10.44298 -10.41153 -10.33661 -10.10709 -9.92393 -9.71321 -9.61222 -9.23941 -8.87881 -8.53251 -8.05227 -7.76975 -6.15225 -4.23533 0.66514 1.20341 2.75862 2.86944 3.27750 3.32222 3.35292 3.81362 4.10383 4.36139 4.52473 4.73011 4.76843 4.83314 4.86732 5.00902 5.11767 5.12119 5.32341 5.37175 5.41926 5.59635 5.69631 5.75458 5.81140 5.91550 5.92996 5.98347 5.99761 6.10689 6.13484 6.27537 6.38359 6.56558 6.62734 6.71875 6.89676 7.10614 7.31610 7.53991 7.56871 7.78510 7.86819 7.97602 8.17409 8.22557 8.77859 9.44897 9.65380 10.91788 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014219 B = 0.004168 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.726391 B = 6715.885848 C = 7940.841729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.082 3.918 3 C -0.169 4.169 4 O -0.362 6.362 5 C 0.497 3.503 6 O -0.442 6.442 7 C -0.166 4.166 8 C -0.016 4.016 9 C -0.210 4.210 10 C 0.146 3.854 11 N -0.517 5.517 12 C 0.367 3.633 13 N -0.453 5.453 14 C 0.032 3.968 15 C -0.125 4.125 16 C 0.262 3.738 17 O -0.574 6.574 18 C -0.537 4.537 19 H 0.059 0.941 20 C 0.073 3.927 21 N -0.893 5.893 22 Si 0.900 3.100 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 C 0.074 3.926 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.146 0.854 35 H 0.139 0.861 36 H 0.158 0.842 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.376 0.624 42 H 0.267 0.733 43 H 0.076 0.924 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.434 3.016 9.909 19.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.027 3.973 3 C -0.227 4.227 4 O -0.281 6.281 5 C 0.337 3.663 6 O -0.324 6.324 7 C -0.171 4.171 8 C -0.042 4.042 9 C -0.230 4.230 10 C -0.014 4.014 11 N -0.230 5.230 12 C 0.137 3.863 13 N -0.174 5.174 14 C -0.094 4.094 15 C -0.164 4.164 16 C 0.222 3.778 17 O -0.381 6.381 18 C -0.576 4.576 19 H 0.078 0.922 20 C -0.130 4.130 21 N -0.533 5.533 22 Si 0.727 3.273 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.050 4.050 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.164 0.836 35 H 0.157 0.843 36 H 0.175 0.825 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.225 0.775 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.184 2.934 9.208 18.850 hybrid contribution 1.128 0.097 0.451 1.219 sum -15.056 3.031 9.659 18.143 Atomic orbital electron populations 1.21871 0.92782 1.02948 1.02824 1.22649 0.94449 0.92675 0.87480 1.22202 1.02645 0.95249 1.02579 1.86558 1.37003 1.63534 1.41046 1.20660 0.79664 0.77659 0.88296 1.91047 1.57758 1.55187 1.28447 1.19792 0.98075 1.05725 0.93547 1.21822 0.97783 0.93801 0.90797 1.22000 0.99173 1.01600 1.00265 1.22894 0.91171 0.93066 0.94265 1.68070 1.32567 1.22672 0.99687 1.20402 0.89701 0.87168 0.89047 1.62622 1.26450 1.07918 1.20420 1.23056 0.97541 0.88650 1.00192 1.22913 0.93148 1.00897 0.99435 1.19268 0.89528 0.88009 0.81038 1.86204 1.62460 1.73206 1.16274 1.21523 0.91964 1.28567 1.15537 0.92229 1.24967 0.99280 0.94032 0.94692 1.69732 1.34483 1.31441 1.17595 0.86538 0.83979 0.78936 0.77842 1.20173 1.21145 1.20098 1.23197 0.87376 0.95635 0.98756 0.91663 0.90550 0.91823 0.89482 0.91891 0.91612 0.90904 0.83584 0.84288 0.82457 0.92116 0.91968 0.91759 0.91351 0.77528 0.92317 0.90537 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.57 37.16 0.36 -0.92 16 2 C 0.08 1.00 3.19 -26.73 -0.09 0.92 16 3 C -0.17 -1.88 9.55 37.16 0.35 -1.52 16 4 O -0.36 -5.14 9.22 -40.67 -0.37 -5.51 16 5 C 0.50 8.65 7.86 34.41 0.27 8.92 16 6 O -0.44 -9.36 14.08 -19.29 -0.27 -9.63 16 7 C -0.17 -2.73 5.91 -104.66 -0.62 -3.35 16 8 C -0.02 -0.19 9.73 -38.88 -0.38 -0.57 16 9 C -0.21 -2.19 10.08 -39.50 -0.40 -2.59 16 10 C 0.15 1.82 11.16 -17.49 -0.20 1.63 16 11 N -0.52 -8.87 8.66 -12.19 -0.11 -8.97 16 12 C 0.37 6.93 5.53 -155.20 -0.86 6.07 16 13 N -0.45 -9.92 3.30 -169.01 -0.56 -10.48 16 14 C 0.03 0.70 6.59 -2.76 -0.02 0.68 16 15 C -0.13 -3.05 5.26 -25.37 -0.13 -3.19 16 16 C 0.26 6.87 0.95 -89.91 -0.09 6.79 16 17 O -0.57 -16.00 13.09 -35.23 -0.46 -16.46 16 18 C -0.54 -14.88 8.15 -34.44 -0.28 -15.16 16 19 H 0.06 1.64 7.78 -52.48 -0.41 1.23 16 20 C 0.07 1.97 5.28 -17.82 -0.09 1.88 16 21 N -0.89 -24.38 11.00 55.43 0.61 -23.77 16 22 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.07 1.78 5.46 -1.89 -0.01 1.77 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 1.22 7.16 -51.93 -0.37 0.85 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.15 1.39 7.71 -52.48 -0.40 0.98 16 35 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.06 1.25 6.56 -51.93 -0.34 0.91 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.06 1.62 7.84 -51.93 -0.41 1.21 16 40 H 0.07 1.73 7.98 -51.93 -0.41 1.32 16 41 H 0.38 10.43 7.46 45.56 0.34 10.77 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.08 1.90 8.03 -51.93 -0.42 1.48 16 44 H 0.05 1.24 7.90 -51.93 -0.41 0.83 16 LS Contribution 364.31 15.07 5.49 5.49 Total: -1.00 -31.76 364.31 -8.64 -40.40 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -5.77 Total: 11.55 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -2.18 Total: 1.34 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: -0.05 Total: -43.22 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -1.11 Total: -31.60 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.76 -8.64 -40.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591973102.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.247 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds