Wall clock time and date at job start Tue Mar 31 2020 12:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47206 * 2 1 4 4 O 1.42895 * 109.47531 * 239.99601 * 2 1 3 5 5 C 1.35499 * 117.00360 * 209.99914 * 4 2 1 6 6 C 1.39173 * 119.52663 * 179.73013 * 5 4 2 7 7 C 1.37952 * 119.25873 * 179.72998 * 6 5 4 8 8 C 1.40278 * 118.36271 * 0.53436 * 7 6 5 9 9 C 1.47610 * 120.50076 * 179.70703 * 8 7 6 10 10 O 1.21584 * 120.00448 * 333.14175 * 9 8 7 11 11 N 1.34783 * 120.00404 * 153.14485 * 9 8 7 12 12 C 1.47432 * 125.64312 * 3.68263 * 11 9 8 13 13 C 1.54910 * 104.82879 * 204.09533 * 12 11 9 14 14 C 1.55157 * 101.58125 * 322.98975 * 13 12 11 15 15 O 1.42895 * 110.72056 * 277.13801 * 14 13 12 16 16 C 1.50704 * 110.71808 * 154.04765 * 14 13 12 17 17 H 1.08001 * 119.99872 * 359.97438 * 16 14 13 18 18 C 1.37871 * 119.99917 * 180.02562 * 16 14 13 19 19 N 1.31516 * 120.00048 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00127 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47163 * 89.99754 * 20 18 16 22 22 H 1.48502 * 109.47212 * 209.99733 * 20 18 16 23 23 H 1.48504 * 109.47112 * 329.99677 * 20 18 16 24 24 C 1.47015 * 125.65251 * 183.37449 * 11 9 8 25 25 C 1.39533 * 119.00234 * 359.72685 * 8 7 6 26 26 N 1.31665 * 120.62399 * 0.02562 * 25 8 7 27 27 H 1.09001 * 109.46853 * 60.00598 * 1 2 3 28 28 H 1.08997 * 109.46730 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47544 * 300.00241 * 1 2 3 30 30 H 1.09006 * 109.47240 * 120.00004 * 2 1 3 31 31 H 1.08995 * 109.47305 * 299.99820 * 3 2 1 32 32 H 1.09004 * 109.46867 * 59.99824 * 3 2 1 33 33 H 1.09003 * 109.47015 * 179.97438 * 3 2 1 34 34 H 1.07996 * 120.36378 * 359.97438 * 6 5 4 35 35 H 1.08006 * 120.81580 * 180.28032 * 7 6 5 36 36 H 1.08997 * 110.36683 * 322.93428 * 12 11 9 37 37 H 1.08997 * 110.36324 * 85.25754 * 12 11 9 38 38 H 1.08996 * 111.00802 * 81.06540 * 13 12 11 39 39 H 1.08999 * 111.00181 * 204.88020 * 13 12 11 40 40 H 0.96705 * 114.00542 * 179.97438 * 15 14 13 41 41 H 0.97001 * 120.00000 * 180.02562 * 19 18 16 42 42 H 1.08996 * 109.88478 * 298.39546 * 24 11 9 43 43 H 1.09004 * 109.87845 * 59.56095 * 24 11 9 44 44 H 1.07999 * 119.68653 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 3.1972 -1.3121 -1.0652 6 6 3.7081 -1.9901 -2.1681 7 6 4.9236 -2.6335 -2.0604 8 6 5.5954 -2.5872 -0.8298 9 6 6.8958 -3.2647 -0.6601 10 8 7.1725 -4.2299 -1.3457 11 7 7.7766 -2.8133 0.2548 12 6 7.5418 -1.7073 1.2009 13 6 8.9555 -1.1851 1.5592 14 6 9.7735 -2.5030 1.5987 15 8 9.6257 -3.1520 2.8631 16 6 11.2275 -2.2370 1.3049 17 1 11.5626 -1.2299 1.1048 18 6 12.1298 -3.2793 1.2906 19 7 11.7217 -4.5057 1.5338 20 14 13.9319 -2.9498 0.9258 21 1 14.6512 -2.6720 2.1949 22 1 14.5296 -4.1398 0.2684 23 1 14.0478 -1.7757 0.0239 24 6 9.1282 -3.3465 0.4790 25 6 5.0156 -1.8915 0.2317 26 7 3.8553 -1.2871 0.0834 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 3.1609 -2.0088 -3.0990 35 1 5.3457 -3.1633 -2.9016 36 1 6.9557 -0.9202 0.7264 37 1 7.0349 -2.0731 2.0938 38 1 9.3319 -0.5147 0.7866 39 1 8.9559 -0.6951 2.5328 40 1 10.1172 -3.9813 2.9395 41 1 12.3566 -5.2390 1.5241 42 1 9.0686 -4.3906 0.7863 43 1 9.7171 -3.2597 -0.4342 44 1 5.5233 -1.8484 1.1839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592839295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:00 Heat of formation + Delta-G solvation = -99.746216 kcal Electronic energy + Delta-G solvation = -27107.457419 eV Core-core repulsion = 23217.641894 eV Total energy + Delta-G solvation = -3889.815525 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.08234 -40.94166 -39.34140 -38.70523 -36.23465 -34.30256 -34.17026 -33.65639 -32.28001 -31.26966 -29.54764 -28.14901 -27.23436 -25.63818 -25.04227 -23.80889 -22.18935 -21.47980 -20.89910 -19.56003 -19.19416 -18.65668 -17.78904 -17.32643 -16.90928 -16.61153 -16.45668 -16.14759 -15.82605 -15.47251 -14.98268 -14.88081 -14.79286 -14.78583 -14.39393 -14.11534 -13.99265 -13.69345 -13.44707 -13.30836 -13.18592 -13.15804 -12.86120 -12.84813 -12.50694 -12.31972 -12.28395 -12.11746 -11.91782 -11.73360 -11.29123 -11.20404 -11.08446 -10.66255 -10.63633 -10.28984 -9.76415 -9.55329 -8.27728 -6.43417 -0.35025 0.07453 1.41356 1.43751 1.52912 1.68396 1.87936 1.99365 2.37661 2.65688 2.98540 3.07648 3.42501 3.69241 3.78889 3.87278 3.93033 4.01061 4.05513 4.09015 4.19489 4.30144 4.32249 4.49083 4.53946 4.63949 4.68181 4.73529 4.84501 4.87811 4.93800 4.98085 4.99971 5.08980 5.19994 5.23372 5.29031 5.31230 5.35909 5.48518 5.74811 6.02888 6.13821 6.52725 6.60386 6.64598 7.03736 7.28758 7.38340 8.78391 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025597 B = 0.002834 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.600972 B = 9878.371589 C =10405.635178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 C -0.165 4.165 4 O -0.302 6.302 5 C 0.336 3.664 6 C -0.189 4.189 7 C 0.012 3.988 8 C -0.230 4.230 9 C 0.568 3.432 10 O -0.591 6.591 11 N -0.607 5.607 12 C 0.096 3.904 13 C -0.113 4.113 14 C 0.234 3.766 15 O -0.588 6.588 16 C -0.556 4.556 17 H 0.069 0.931 18 C 0.025 3.975 19 N -0.917 5.917 20 Si 0.963 3.037 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.268 1.268 24 C 0.117 3.883 25 C 0.170 3.830 26 N -0.544 5.544 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.175 0.825 35 H 0.155 0.845 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.379 0.621 41 H 0.271 0.729 42 H 0.033 0.967 43 H 0.037 0.963 44 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.060 10.811 -2.898 22.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.015 3.985 3 C -0.222 4.222 4 O -0.209 6.209 5 C 0.157 3.843 6 C -0.209 4.209 7 C -0.014 4.014 8 C -0.236 4.236 9 C 0.358 3.642 10 O -0.473 6.473 11 N -0.338 5.338 12 C -0.026 4.026 13 C -0.150 4.150 14 C 0.194 3.806 15 O -0.398 6.398 16 C -0.594 4.594 17 H 0.087 0.913 18 C -0.175 4.175 19 N -0.557 5.557 20 Si 0.789 3.211 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.192 1.192 24 C -0.006 4.006 25 C 0.013 3.987 26 N -0.268 5.268 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.065 0.935 34 H 0.192 0.808 35 H 0.173 0.827 36 H 0.121 0.879 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.230 0.770 41 H 0.081 0.919 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -20.868 11.124 -2.688 23.800 hybrid contribution 2.214 -1.452 -0.840 2.778 sum -18.654 9.672 -3.528 21.306 Atomic orbital electron populations 1.21918 0.90878 1.03257 1.04221 1.22668 0.95953 0.93041 0.86873 1.22198 1.01208 0.95034 1.03776 1.86273 1.30768 1.63845 1.40009 1.20313 0.85917 0.88308 0.89775 1.21224 0.97235 1.02267 1.00220 1.21594 0.91752 0.91891 0.96157 1.20602 0.97233 1.07379 0.98369 1.18162 0.83890 0.83093 0.79020 1.90730 1.79132 1.29195 1.48288 1.48698 1.15374 1.35019 1.34744 1.22866 0.98708 0.88651 0.92345 1.22783 0.92962 0.96388 1.02895 1.19696 0.92602 0.88511 0.79800 1.86056 1.74623 1.42329 1.36748 1.21853 0.93375 0.94804 1.49388 0.91330 1.25812 1.03487 0.94720 0.93516 1.69675 1.36684 0.99893 1.49453 0.85467 0.79453 0.77718 0.78488 1.19753 1.21181 1.19231 1.22627 0.80469 0.97629 0.99846 1.23417 0.88911 0.87480 0.98883 1.67391 1.10200 1.24526 1.24668 0.91153 0.92088 0.88460 0.89943 0.91541 0.89149 0.93490 0.80786 0.82692 0.87950 0.89557 0.89758 0.88682 0.77039 0.91941 0.94836 0.94416 0.79729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.56 71.98 0.69 -0.91 16 2 C 0.07 1.14 3.10 30.59 0.09 1.23 16 3 C -0.16 -2.34 9.53 71.98 0.69 -1.65 16 4 O -0.30 -6.18 9.75 -88.00 -0.86 -7.04 16 5 C 0.34 7.75 7.46 84.83 0.63 8.38 16 6 C -0.19 -4.02 10.02 22.43 0.22 -3.79 16 7 C 0.01 0.30 9.71 22.70 0.22 0.52 16 8 C -0.23 -6.99 5.72 -20.00 -0.11 -7.10 16 9 C 0.57 22.59 7.65 86.72 0.66 23.25 16 10 O -0.59 -28.15 17.04 -3.98 -0.07 -28.22 16 11 N -0.61 -24.42 3.33 -815.43 -2.71 -27.13 16 12 C 0.10 3.04 5.01 86.85 0.44 3.47 16 13 C -0.11 -4.13 6.23 31.99 0.20 -3.93 16 14 C 0.23 11.10 0.86 -10.35 -0.01 11.10 16 15 O -0.59 -29.27 13.07 -148.98 -1.95 -31.21 16 16 C -0.56 -28.64 8.12 25.60 0.21 -28.43 16 17 H 0.07 3.43 7.76 -2.91 -0.02 3.40 16 18 C 0.03 1.31 5.28 84.65 0.45 1.76 16 19 N -0.92 -49.40 10.97 21.45 0.24 -49.16 16 20 Si 0.96 41.61 29.54 68.60 2.03 43.63 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 22 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 C 0.12 5.74 5.54 86.73 0.48 6.22 16 25 C 0.17 4.45 9.12 85.03 0.78 5.22 16 26 N -0.54 -13.34 8.61 -307.81 -2.65 -15.99 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.08 1.51 6.97 -2.38 -0.02 1.49 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 35 H 0.16 3.79 7.94 -2.91 -0.02 3.77 16 36 H 0.10 2.60 6.14 -2.39 -0.01 2.58 16 37 H 0.09 2.52 7.31 -2.39 -0.02 2.50 16 38 H 0.08 2.97 8.03 -2.39 -0.02 2.95 16 39 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 40 H 0.38 19.95 6.98 -74.05 -0.52 19.43 16 41 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 42 H 0.03 1.83 8.07 -2.39 -0.02 1.81 16 43 H 0.04 2.02 7.82 -2.38 -0.02 2.01 16 44 H 0.19 4.41 4.54 -2.91 -0.01 4.40 16 Total: -1.00 -64.92 361.47 0.17 -64.75 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: 0.51 Total: 35.04 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: 5.63 Total: 15.33 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -5.13 Total: -92.28 kcal Atomic # 8 Polarization: -63.60 SS G_CDS: -2.87 Total: -66.48 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -64.92 0.17 -64.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.996 kcal (2) G-P(sol) polarization free energy of solvation -64.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds