Wall clock time and date at job start Tue Mar 31 2020 12:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53008 * 109.47319 * 2 1 4 4 O 1.42900 * 109.47468 * 119.99848 * 2 1 3 5 5 C 1.35690 * 117.00147 * 149.99787 * 4 2 1 6 6 C 1.38895 * 119.62034 * 180.27994 * 5 4 2 7 7 C 1.39571 * 118.94305 * 180.22690 * 6 5 4 8 8 C 1.48158 * 120.89540 * 179.77847 * 7 6 5 9 9 O 1.21521 * 119.99778 * 7.28702 * 8 7 6 10 10 N 1.34772 * 120.00538 * 187.28415 * 8 7 6 11 11 C 1.47430 * 125.65038 * 175.02618 * 10 8 7 12 12 C 1.55390 * 104.87235 * 204.17032 * 11 10 8 13 13 C 1.55153 * 101.36716 * 323.01866 * 12 11 10 14 14 O 1.42908 * 110.71573 * 277.04285 * 13 12 11 15 15 C 1.50698 * 110.71980 * 153.95191 * 13 12 11 16 16 H 1.07992 * 120.00267 * 2.43209 * 15 13 12 17 17 C 1.37884 * 119.99607 * 182.44158 * 15 13 12 18 18 N 1.31508 * 120.00155 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 119.99470 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47206 * 89.99888 * 19 17 15 21 21 H 1.48506 * 109.46507 * 209.99899 * 19 17 15 22 22 H 1.48496 * 109.47042 * 329.99372 * 19 17 15 23 23 C 1.47026 * 125.64813 * 355.07183 * 10 8 7 24 24 C 1.39974 * 118.21883 * 359.50842 * 7 6 5 25 25 C 1.37985 * 119.12945 * 0.24553 * 24 7 6 26 26 N 1.31903 * 120.97861 * 0.02562 * 25 24 7 27 27 H 1.09002 * 109.47369 * 299.99879 * 1 2 3 28 28 H 1.09002 * 109.47428 * 59.99780 * 1 2 3 29 29 H 1.08999 * 109.47606 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47369 * 240.00121 * 2 1 3 31 31 H 1.08997 * 109.46890 * 300.00014 * 3 2 1 32 32 H 1.09002 * 109.46801 * 59.99773 * 3 2 1 33 33 H 1.08999 * 109.47459 * 180.02562 * 3 2 1 34 34 H 1.07994 * 120.53027 * 0.02562 * 6 5 4 35 35 H 1.08997 * 110.36555 * 323.00223 * 11 10 8 36 36 H 1.08996 * 110.36214 * 85.21730 * 11 10 8 37 37 H 1.08999 * 111.18670 * 204.97975 * 12 11 10 38 38 H 1.09005 * 111.02063 * 80.98552 * 12 11 10 39 39 H 0.96700 * 113.99340 * 177.55947 * 14 13 12 40 40 H 0.97004 * 119.99897 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.88130 * 59.48266 * 23 10 8 42 42 H 1.09003 * 110.00746 * 298.39155 * 23 10 8 43 43 H 1.07993 * 120.43440 * 180.22995 * 24 7 6 44 44 H 1.07994 * 119.50734 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.1988 -1.3130 1.0652 6 6 3.7104 -1.9903 2.1646 7 6 4.9404 -2.6391 2.0459 8 6 5.5287 -3.3702 3.1924 9 8 4.8833 -3.5241 4.2105 10 7 6.7795 -3.8646 3.1063 11 6 7.5224 -4.5179 4.1994 12 6 9.0203 -4.3327 3.8300 13 6 8.9766 -4.4908 2.2871 14 8 8.9935 -5.8717 1.9198 15 6 10.1238 -3.7557 1.6432 16 1 10.8545 -3.2508 2.2575 17 6 10.2403 -3.7278 0.2695 18 7 9.3507 -4.3429 -0.4785 19 14 11.6620 -2.8160 -0.5287 20 1 12.8107 -3.7416 -0.6985 21 1 11.2382 -2.3040 -1.8567 22 1 12.0669 -1.6776 0.3345 23 6 7.6295 -3.8410 1.9069 24 6 5.6007 -2.5854 0.8128 25 6 5.0196 -1.8946 -0.2308 26 7 3.8578 -1.2885 -0.0803 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4426 -0.0005 34 1 3.1667 -2.0118 3.0975 35 1 7.3037 -4.0319 5.1501 36 1 7.2706 -5.5773 4.2489 37 1 9.6370 -5.1079 4.2848 38 1 9.3726 -3.3402 4.1113 39 1 8.9300 -6.0260 0.9673 40 1 9.4325 -4.3228 -1.4449 41 1 7.7915 -2.8116 1.5876 42 1 7.1578 -4.4081 1.1043 43 1 6.5526 -3.0779 0.6801 44 1 5.5239 -1.8489 -1.1846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592844664.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:07 Heat of formation + Delta-G solvation = -67.647509 kcal Electronic energy + Delta-G solvation = -27482.815853 eV Core-core repulsion = 23594.392233 eV Total energy + Delta-G solvation = -3888.423620 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.78765 -39.56438 -37.99640 -37.31345 -34.39886 -33.37910 -32.65309 -32.32540 -30.55693 -29.73256 -27.99195 -27.42061 -25.70404 -24.67261 -23.17533 -22.67175 -21.23208 -19.93619 -19.56531 -18.17445 -17.29252 -16.99306 -16.15839 -15.74423 -15.64058 -15.27579 -15.03276 -14.90326 -14.46322 -14.33693 -14.02167 -13.76353 -13.33314 -13.13877 -13.04607 -12.98577 -12.48177 -12.44687 -12.35081 -12.03284 -11.79318 -11.70991 -11.55814 -11.14155 -11.06273 -10.87114 -10.74497 -10.70814 -10.54758 -10.32817 -9.93163 -9.72368 -9.50832 -9.33733 -8.81006 -8.40733 -8.39728 -8.08177 -6.45613 -4.53553 0.90392 1.31849 2.89455 3.11364 3.17650 3.20051 3.22798 3.49077 4.01823 4.14648 4.34790 4.70074 4.73958 4.83096 4.84333 5.06352 5.09925 5.23065 5.30577 5.36182 5.44922 5.55874 5.63206 5.64717 5.70448 5.75650 5.82112 5.85728 5.92333 6.03272 6.05384 6.11521 6.25547 6.36777 6.47091 6.52378 6.64614 6.78304 6.91991 7.15767 7.31752 7.58054 7.81531 7.90960 8.01140 8.44705 8.52906 9.15581 9.26309 10.62204 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014571 B = 0.003783 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.137824 B = 7400.649286 C = 8833.009260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.081 3.919 3 C -0.168 4.168 4 O -0.303 6.303 5 C 0.310 3.690 6 C -0.138 4.138 7 C -0.047 4.047 8 C 0.566 3.434 9 O -0.551 6.551 10 N -0.599 5.599 11 C 0.110 3.890 12 C -0.118 4.118 13 C 0.247 3.753 14 O -0.582 6.582 15 C -0.535 4.535 16 H 0.068 0.932 17 C 0.072 3.928 18 N -0.900 5.900 19 Si 0.903 3.097 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.272 1.272 23 C 0.079 3.921 24 C -0.205 4.205 25 C 0.135 3.865 26 N -0.530 5.530 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.149 0.851 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.384 0.616 40 H 0.272 0.728 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.189 0.811 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.297 6.510 -1.524 12.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.025 3.975 3 C -0.226 4.226 4 O -0.211 6.211 5 C 0.131 3.869 6 C -0.160 4.160 7 C -0.058 4.058 8 C 0.354 3.646 9 O -0.431 6.431 10 N -0.331 5.331 11 C -0.012 4.012 12 C -0.156 4.156 13 C 0.206 3.794 14 O -0.392 6.392 15 C -0.574 4.574 16 H 0.086 0.914 17 C -0.131 4.131 18 N -0.539 5.539 19 Si 0.730 3.270 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.197 1.197 23 C -0.043 4.043 24 C -0.224 4.224 25 C -0.020 4.020 26 N -0.254 5.254 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.166 0.834 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.235 0.765 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.205 0.795 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -11.247 6.814 -1.000 13.188 hybrid contribution 1.055 0.256 -0.839 1.373 sum -10.192 7.070 -1.839 12.540 Atomic orbital electron populations 1.21900 0.93075 1.02951 1.02799 1.22306 0.94248 0.92727 0.88248 1.22213 1.02299 0.95704 1.02346 1.86289 1.31711 1.64643 1.38429 1.19543 0.86476 0.91217 0.89666 1.21032 0.96063 0.99602 0.99300 1.20100 0.94094 0.97017 0.94549 1.17755 0.80744 0.79372 0.86736 1.90721 1.60442 1.60278 1.31623 1.48613 1.13337 1.55942 1.15162 1.22350 0.91984 0.97250 0.89661 1.22874 0.93344 1.01984 0.97433 1.19532 0.89880 0.80402 0.89539 1.86143 1.96742 1.25943 1.30340 1.21559 1.10428 1.33591 0.91783 0.91357 1.25043 0.96262 0.94591 0.97190 1.69610 1.35078 1.43144 1.06106 0.86401 0.82032 0.79951 0.78598 1.20338 1.20901 1.19694 1.23618 0.92897 1.02068 0.85700 1.23962 1.04495 1.01314 0.92651 1.22453 0.89179 0.91255 0.99147 1.67082 1.10790 1.23181 1.24390 0.91710 0.90628 0.91845 0.89261 0.91263 0.92094 0.91896 0.83366 0.91413 0.91443 0.90170 0.90363 0.76495 0.91797 0.90172 0.90327 0.79483 0.81762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.56 37.15 0.36 -0.95 16 2 C 0.08 0.92 3.11 -26.73 -0.08 0.84 16 3 C -0.17 -1.71 9.53 37.16 0.35 -1.35 16 4 O -0.30 -4.35 9.76 -18.77 -0.18 -4.53 16 5 C 0.31 4.90 7.45 -17.16 -0.13 4.77 16 6 C -0.14 -2.32 9.61 -38.84 -0.37 -2.70 16 7 C -0.05 -0.84 5.90 -104.68 -0.62 -1.46 16 8 C 0.57 11.28 7.83 -12.19 -0.10 11.19 16 9 O -0.55 -12.03 16.76 5.35 0.09 -11.94 16 10 N -0.60 -11.81 3.33 -171.45 -0.57 -12.38 16 11 C 0.11 2.04 6.89 -2.26 -0.02 2.02 16 12 C -0.12 -2.26 6.26 -24.32 -0.15 -2.42 16 13 C 0.25 5.42 0.85 -89.94 -0.08 5.34 16 14 O -0.58 -13.54 13.08 -35.23 -0.46 -14.00 16 15 C -0.54 -12.67 8.11 -34.44 -0.28 -12.94 16 16 H 0.07 1.62 7.77 -52.49 -0.41 1.21 16 17 C 0.07 1.67 5.28 -17.82 -0.09 1.58 16 18 N -0.90 -20.80 10.96 55.43 0.61 -20.20 16 19 Si 0.90 18.69 29.54 -169.99 -5.02 13.67 16 20 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 21 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 23 C 0.08 1.60 3.39 -3.06 -0.01 1.59 16 24 C -0.20 -3.43 8.67 -39.02 -0.34 -3.77 16 25 C 0.13 2.03 11.17 -17.61 -0.20 1.83 16 26 N -0.53 -8.15 8.61 -13.38 -0.12 -8.26 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.07 6.98 -51.93 -0.36 0.71 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.15 2.43 7.76 -52.49 -0.41 2.02 16 35 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.08 1.43 8.04 -51.93 -0.42 1.02 16 39 H 0.38 9.00 7.23 45.56 0.33 9.33 16 40 H 0.27 6.06 8.31 -40.82 -0.34 5.72 16 41 H 0.08 1.67 6.36 -51.93 -0.33 1.34 16 42 H 0.08 1.65 6.67 -51.93 -0.35 1.30 16 43 H 0.19 3.35 2.96 -52.80 -0.16 3.19 16 44 H 0.17 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 360.31 15.07 5.43 5.43 Total: -1.00 -26.28 360.31 -7.43 -33.71 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -5.46 Total: 14.92 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -1.75 Total: 3.57 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: -0.08 Total: -40.84 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.55 Total: -30.47 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -26.28 -7.43 -33.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844664.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.933 kcal (2) G-P(sol) polarization free energy of solvation -26.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds