Wall clock time and date at job start Tue Mar 31 2020 12:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53008 * 109.47319 * 2 1 4 4 O 1.42900 * 109.47468 * 119.99848 * 2 1 3 5 5 C 1.35690 * 117.00147 * 149.99787 * 4 2 1 6 6 C 1.38895 * 119.62034 * 180.27994 * 5 4 2 7 7 C 1.39571 * 118.94305 * 180.22690 * 6 5 4 8 8 C 1.48158 * 120.89540 * 179.77847 * 7 6 5 9 9 O 1.21521 * 119.99778 * 7.28702 * 8 7 6 10 10 N 1.34772 * 120.00538 * 187.28415 * 8 7 6 11 11 C 1.47430 * 125.65038 * 175.02618 * 10 8 7 12 12 C 1.55390 * 104.87235 * 204.17032 * 11 10 8 13 13 C 1.55153 * 101.36716 * 323.01866 * 12 11 10 14 14 O 1.42908 * 110.71573 * 277.04285 * 13 12 11 15 15 C 1.50698 * 110.71980 * 153.95191 * 13 12 11 16 16 H 1.07992 * 120.00267 * 2.43209 * 15 13 12 17 17 C 1.37884 * 119.99607 * 182.44158 * 15 13 12 18 18 N 1.31508 * 120.00155 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 119.99470 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47206 * 89.99888 * 19 17 15 21 21 H 1.48506 * 109.46507 * 209.99899 * 19 17 15 22 22 H 1.48496 * 109.47042 * 329.99372 * 19 17 15 23 23 C 1.47026 * 125.64813 * 355.07183 * 10 8 7 24 24 C 1.39974 * 118.21883 * 359.50842 * 7 6 5 25 25 C 1.37985 * 119.12945 * 0.24553 * 24 7 6 26 26 N 1.31903 * 120.97861 * 0.02562 * 25 24 7 27 27 H 1.09002 * 109.47369 * 299.99879 * 1 2 3 28 28 H 1.09002 * 109.47428 * 59.99780 * 1 2 3 29 29 H 1.08999 * 109.47606 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47369 * 240.00121 * 2 1 3 31 31 H 1.08997 * 109.46890 * 300.00014 * 3 2 1 32 32 H 1.09002 * 109.46801 * 59.99773 * 3 2 1 33 33 H 1.08999 * 109.47459 * 180.02562 * 3 2 1 34 34 H 1.07994 * 120.53027 * 0.02562 * 6 5 4 35 35 H 1.08997 * 110.36555 * 323.00223 * 11 10 8 36 36 H 1.08996 * 110.36214 * 85.21730 * 11 10 8 37 37 H 1.08999 * 111.18670 * 204.97975 * 12 11 10 38 38 H 1.09005 * 111.02063 * 80.98552 * 12 11 10 39 39 H 0.96700 * 113.99340 * 177.55947 * 14 13 12 40 40 H 0.97004 * 119.99897 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.88130 * 59.48266 * 23 10 8 42 42 H 1.09003 * 110.00746 * 298.39155 * 23 10 8 43 43 H 1.07993 * 120.43440 * 180.22995 * 24 7 6 44 44 H 1.07994 * 119.50734 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.1988 -1.3130 1.0652 6 6 3.7104 -1.9903 2.1646 7 6 4.9404 -2.6391 2.0459 8 6 5.5287 -3.3702 3.1924 9 8 4.8833 -3.5241 4.2105 10 7 6.7795 -3.8646 3.1063 11 6 7.5224 -4.5179 4.1994 12 6 9.0203 -4.3327 3.8300 13 6 8.9766 -4.4908 2.2871 14 8 8.9935 -5.8717 1.9198 15 6 10.1238 -3.7557 1.6432 16 1 10.8545 -3.2508 2.2575 17 6 10.2403 -3.7278 0.2695 18 7 9.3507 -4.3429 -0.4785 19 14 11.6620 -2.8160 -0.5287 20 1 12.8107 -3.7416 -0.6985 21 1 11.2382 -2.3040 -1.8567 22 1 12.0669 -1.6776 0.3345 23 6 7.6295 -3.8410 1.9069 24 6 5.6007 -2.5854 0.8128 25 6 5.0196 -1.8946 -0.2308 26 7 3.8578 -1.2885 -0.0803 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4426 -0.0005 34 1 3.1667 -2.0118 3.0975 35 1 7.3037 -4.0319 5.1501 36 1 7.2706 -5.5773 4.2489 37 1 9.6370 -5.1079 4.2848 38 1 9.3726 -3.3402 4.1113 39 1 8.9300 -6.0260 0.9673 40 1 9.4325 -4.3228 -1.4449 41 1 7.7915 -2.8116 1.5876 42 1 7.1578 -4.4081 1.1043 43 1 6.5526 -3.0779 0.6801 44 1 5.5239 -1.8489 -1.1846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592844664.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:06 Heat of formation + Delta-G solvation = -85.012206 kcal Electronic energy + Delta-G solvation = -27483.568843 eV Core-core repulsion = 23594.392233 eV Total energy + Delta-G solvation = -3889.176610 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.10632 -40.99034 -39.28042 -38.87472 -36.10194 -34.33578 -34.17425 -33.94067 -31.97909 -31.14282 -29.59507 -28.16516 -27.34037 -26.14988 -24.46415 -24.02928 -22.39598 -21.52474 -20.94599 -19.53400 -18.99086 -18.33685 -17.67342 -17.12034 -16.91172 -16.73791 -16.49743 -16.42863 -15.94416 -15.46383 -15.28088 -14.90813 -14.81949 -14.77744 -14.61386 -14.11369 -13.89618 -13.45072 -13.40734 -13.29240 -13.19115 -12.99390 -12.88138 -12.77534 -12.36424 -12.30717 -12.21091 -12.07556 -11.92267 -11.78523 -11.45747 -11.12487 -11.06659 -10.75655 -10.56873 -10.14053 -9.73830 -9.57869 -8.22371 -6.35988 -0.45877 0.05132 1.46702 1.52414 1.58742 1.64670 1.70674 2.10966 2.43418 2.69699 3.02977 3.15660 3.31125 3.78874 3.83609 3.87877 3.95784 3.99234 4.03017 4.11386 4.16839 4.27586 4.30102 4.54341 4.59137 4.62584 4.69585 4.74999 4.83039 4.84934 4.88137 4.89963 4.99488 5.07889 5.16649 5.21331 5.26281 5.28554 5.35245 5.47483 5.79116 6.06742 6.18239 6.40840 6.66526 6.68539 6.90120 7.34555 7.43761 8.84236 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014571 B = 0.003783 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.137824 B = 7400.649286 C = 8833.009260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.071 3.929 3 C -0.164 4.164 4 O -0.310 6.310 5 C 0.313 3.687 6 C -0.146 4.146 7 C -0.059 4.059 8 C 0.563 3.437 9 O -0.574 6.574 10 N -0.601 5.601 11 C 0.110 3.890 12 C -0.112 4.112 13 C 0.232 3.768 14 O -0.590 6.590 15 C -0.557 4.557 16 H 0.062 0.938 17 C 0.042 3.958 18 N -0.907 5.907 19 Si 0.954 3.046 20 H -0.282 1.282 21 H -0.279 1.279 22 H -0.274 1.274 23 C 0.098 3.902 24 C -0.209 4.209 25 C 0.144 3.856 26 N -0.526 5.526 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.147 0.853 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.380 0.620 40 H 0.275 0.725 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.178 0.822 44 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.934 7.704 -2.555 13.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.015 3.985 3 C -0.221 4.221 4 O -0.218 6.218 5 C 0.134 3.866 6 C -0.168 4.168 7 C -0.070 4.070 8 C 0.353 3.647 9 O -0.456 6.456 10 N -0.332 5.332 11 C -0.012 4.012 12 C -0.150 4.150 13 C 0.191 3.809 14 O -0.399 6.399 15 C -0.595 4.595 16 H 0.080 0.920 17 C -0.160 4.160 18 N -0.546 5.546 19 Si 0.780 3.220 20 H -0.208 1.208 21 H -0.204 1.204 22 H -0.199 1.199 23 C -0.023 4.023 24 C -0.229 4.229 25 C -0.012 4.012 26 N -0.250 5.250 27 H 0.086 0.914 28 H 0.119 0.881 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.165 0.835 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.230 0.770 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.194 0.806 44 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -11.896 8.012 -2.027 14.485 hybrid contribution 1.207 -0.095 -0.557 1.333 sum -10.689 7.917 -2.585 13.550 Atomic orbital electron populations 1.21918 0.90843 1.03219 1.04229 1.22657 0.95970 0.92971 0.86873 1.22195 1.01033 0.95140 1.03758 1.86298 1.30857 1.64519 1.40129 1.19597 0.86883 0.90733 0.89360 1.21041 0.95865 1.00078 0.99806 1.20003 0.94830 0.97800 0.94339 1.18075 0.80531 0.79086 0.87026 1.90696 1.60919 1.61285 1.32676 1.48666 1.13400 1.55927 1.15237 1.22397 0.91501 0.97326 0.89959 1.22853 0.93853 1.02687 0.95582 1.19745 0.90194 0.79707 0.91207 1.86138 1.96839 1.26948 1.30010 1.21729 1.11125 1.34336 0.92298 0.91993 1.25553 0.97879 0.95117 0.97498 1.69658 1.35545 1.43087 1.06298 0.85617 0.79691 0.78779 0.77880 1.20837 1.20407 1.19884 1.23305 0.92153 1.01314 0.85560 1.23818 1.04205 1.02051 0.92831 1.22856 0.88843 0.89855 0.99604 1.67208 1.10745 1.22999 1.24060 0.91367 0.88083 0.92186 0.89894 0.88807 0.91753 0.93777 0.83481 0.90110 0.91518 0.89383 0.89641 0.76971 0.91543 0.90724 0.91148 0.80567 0.79016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.56 71.98 0.69 -1.49 16 2 C 0.07 1.48 3.11 30.59 0.10 1.58 16 3 C -0.16 -3.00 9.53 71.98 0.69 -2.31 16 4 O -0.31 -8.57 9.76 -90.09 -0.88 -9.45 16 5 C 0.31 9.65 7.45 84.80 0.63 10.28 16 6 C -0.15 -4.89 9.61 22.75 0.22 -4.67 16 7 C -0.06 -2.12 5.90 -19.90 -0.12 -2.24 16 8 C 0.56 22.59 7.83 86.88 0.68 23.27 16 9 O -0.57 -25.22 16.76 -3.78 -0.06 -25.28 16 10 N -0.60 -23.71 3.33 -814.63 -2.71 -26.42 16 11 C 0.11 4.03 6.89 87.02 0.60 4.63 16 12 C -0.11 -4.22 6.26 32.15 0.20 -4.01 16 13 C 0.23 10.14 0.85 -10.35 -0.01 10.13 16 14 O -0.59 -27.52 13.08 -148.98 -1.95 -29.46 16 15 C -0.56 -26.21 8.11 25.60 0.21 -26.00 16 16 H 0.06 2.93 7.77 -2.91 -0.02 2.90 16 17 C 0.04 1.91 5.28 84.66 0.45 2.35 16 18 N -0.91 -41.44 10.96 21.45 0.23 -41.21 16 19 Si 0.95 37.70 29.54 68.60 2.03 39.73 16 20 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 21 H -0.28 -10.74 7.11 99.48 0.71 -10.04 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 23 C 0.10 4.02 3.39 86.73 0.29 4.31 16 24 C -0.21 -6.94 8.67 22.63 0.20 -6.74 16 25 C 0.14 4.12 11.17 84.62 0.94 5.07 16 26 N -0.53 -15.44 8.61 -309.13 -2.66 -18.10 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 28 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 1.85 6.98 -2.39 -0.02 1.83 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.15 4.87 7.76 -2.91 -0.02 4.85 16 35 H 0.08 2.75 8.09 -2.39 -0.02 2.73 16 36 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.09 3.07 8.04 -2.38 -0.02 3.05 16 39 H 0.38 17.96 7.23 -74.06 -0.54 17.42 16 40 H 0.27 12.00 8.31 -92.71 -0.77 11.23 16 41 H 0.07 3.13 6.36 -2.39 -0.02 3.11 16 42 H 0.07 2.99 6.67 -2.39 -0.02 2.97 16 43 H 0.18 6.30 2.96 -3.21 -0.01 6.29 16 44 H 0.19 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -54.63 360.31 0.26 -54.38 By element: Atomic # 1 Polarization: 41.16 SS G_CDS: 0.50 Total: 41.66 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: 5.77 Total: 14.17 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -5.14 Total: -85.73 kcal Atomic # 8 Polarization: -61.31 SS G_CDS: -2.89 Total: -64.20 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Total: -54.63 0.26 -54.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844664.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.637 kcal (2) G-P(sol) polarization free energy of solvation -54.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds