Wall clock time and date at job start Tue Mar 31 2020 12:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46811 * 2 1 4 4 O 1.42900 * 109.46527 * 180.02562 * 3 2 1 5 5 C 1.35652 * 116.99615 * 180.02562 * 4 3 2 6 6 C 1.39338 * 120.54107 * 0.02562 * 5 4 3 7 7 C 1.38305 * 118.44178 * 179.97438 * 6 5 4 8 8 C 1.38769 * 119.44245 * 359.97438 * 7 6 5 9 9 N 1.31378 * 121.06762 * 359.72496 * 8 7 6 10 10 C 1.32865 * 121.69474 * 0.56756 * 9 8 7 11 11 C 1.47818 * 119.78316 * 179.70675 * 10 9 8 12 12 O 1.21560 * 120.00144 * 179.72208 * 11 10 9 13 13 N 1.34776 * 120.00235 * 359.72898 * 11 10 9 14 14 C 1.47422 * 125.64926 * 0.02664 * 13 11 10 15 15 C 1.54909 * 104.83564 * 155.82503 * 14 13 11 16 16 C 1.55152 * 101.58032 * 37.00513 * 15 14 13 17 17 O 1.42903 * 110.72100 * 82.86680 * 16 15 14 18 18 C 1.50703 * 110.71825 * 205.95483 * 16 15 14 19 19 H 1.07993 * 120.00249 * 357.56786 * 18 16 15 20 20 C 1.37877 * 119.99923 * 177.55974 * 18 16 15 21 21 N 1.31521 * 120.00053 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 120.00236 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.46982 * 59.99775 * 22 20 18 24 24 H 1.48496 * 109.47392 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46775 * 300.00303 * 22 20 18 26 26 C 1.47027 * 125.65206 * 179.97438 * 13 11 10 27 27 H 1.08998 * 109.47263 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47427 * 300.00075 * 1 2 3 29 29 H 1.08999 * 109.47509 * 59.99797 * 1 2 3 30 30 H 1.08996 * 109.46984 * 240.00354 * 2 1 3 31 31 H 1.08999 * 109.46710 * 119.99741 * 2 1 3 32 32 H 1.08996 * 109.47058 * 60.00399 * 3 2 1 33 33 H 1.08993 * 109.47522 * 300.00044 * 3 2 1 34 34 H 1.07997 * 120.78595 * 359.95720 * 6 5 4 35 35 H 1.07999 * 120.27969 * 180.02562 * 7 6 5 36 36 H 1.08002 * 119.46619 * 180.02562 * 8 7 6 37 37 H 1.09002 * 110.36847 * 36.97758 * 14 13 11 38 38 H 1.09005 * 110.45737 * 274.70993 * 14 13 11 39 39 H 1.09005 * 111.00113 * 278.93173 * 15 14 13 40 40 H 1.08998 * 111.03822 * 155.09465 * 15 14 13 41 41 H 0.96700 * 114.00311 * 179.97438 * 17 16 15 42 42 H 0.97000 * 119.99959 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.87825 * 61.68763 * 26 13 11 44 44 H 1.09001 * 109.88209 * 300.52818 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4689 1.4425 -0.0006 5 6 4.0848 2.6512 -0.0001 6 6 3.3369 3.8269 0.0014 7 6 4.0095 5.0353 0.0024 8 6 5.3972 5.0437 0.0023 9 7 6.0819 3.9224 0.0067 10 6 5.4810 2.7375 0.0003 11 6 6.2931 1.5024 -0.0009 12 8 5.7474 0.4161 -0.0017 13 7 7.6386 1.5805 -0.0009 14 6 8.4269 2.8262 0.0007 15 6 9.7935 2.4300 0.6132 16 6 9.9969 1.0079 0.0272 17 8 10.5396 1.0779 -1.2929 18 6 10.8849 0.1839 0.9236 19 1 11.3123 0.6239 1.8125 20 6 11.1516 -1.1317 0.6090 21 7 10.6314 -1.6675 -0.4737 22 14 12.2518 -2.1534 1.7204 23 1 11.6555 -2.2231 3.0786 24 1 12.3805 -3.5244 1.1648 25 1 13.5947 -1.5244 1.8011 26 6 8.5633 0.4375 -0.0015 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 2.2574 3.7953 0.0016 35 1 3.4594 5.9647 0.0040 36 1 5.9228 5.9872 0.0035 37 1 7.9400 3.5825 0.6164 38 1 8.5596 3.1944 -1.0167 39 1 9.7398 2.4002 1.7015 40 1 10.5817 3.1058 0.2813 41 1 10.6863 0.2150 -1.7041 42 1 10.8194 -2.5929 -0.6952 43 1 8.4184 -0.1561 -0.9042 44 1 8.3917 -0.1786 0.8812 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592848762.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:32 Heat of formation + Delta-G solvation = -78.089981 kcal Electronic energy + Delta-G solvation = -27431.358625 eV Core-core repulsion = 23542.482185 eV Total energy + Delta-G solvation = -3888.876440 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.89865 -38.95919 -38.28392 -36.95130 -34.30163 -34.03642 -32.43405 -32.11036 -30.61999 -29.75856 -27.68167 -26.88961 -25.56616 -24.20486 -23.02050 -22.31457 -21.52240 -19.75537 -19.27033 -18.12790 -17.25608 -16.96544 -16.67942 -16.52043 -15.35676 -15.25849 -15.00630 -14.75589 -14.44025 -14.30805 -14.08657 -13.83182 -13.37059 -12.93150 -12.82724 -12.80257 -12.64294 -12.34466 -12.23592 -11.82125 -11.77875 -11.56308 -11.32892 -11.19943 -10.98080 -10.87784 -10.71227 -10.46724 -10.45834 -10.13295 -9.91708 -9.73185 -9.20800 -9.04171 -8.57593 -8.50436 -8.22065 -7.64956 -6.21396 -4.29979 0.69860 1.14666 2.95263 3.14211 3.27255 3.32462 3.34692 3.62579 4.04539 4.30775 4.35723 4.44584 4.59293 4.63808 4.68926 4.88202 4.95227 4.99896 5.06593 5.12517 5.20266 5.37286 5.41352 5.70335 5.71758 5.76129 5.81920 5.84981 5.98809 6.00411 6.09414 6.23013 6.31064 6.58631 6.71873 6.91604 7.02091 7.14073 7.20338 7.38556 7.48744 7.77628 7.80923 8.09864 8.36705 8.72685 8.87488 9.38535 9.49891 10.86131 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015272 B = 0.003570 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.971807 B = 7842.154709 C = 9264.451369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.051 3.949 4 O -0.268 6.268 5 C 0.136 3.864 6 C -0.179 4.179 7 C -0.115 4.115 8 C 0.051 3.949 9 N -0.411 5.411 10 C 0.060 3.940 11 C 0.569 3.431 12 O -0.529 6.529 13 N -0.591 5.591 14 C 0.107 3.893 15 C -0.123 4.123 16 C 0.248 3.752 17 O -0.585 6.585 18 C -0.537 4.537 19 H 0.066 0.934 20 C 0.069 3.931 21 N -0.895 5.895 22 Si 0.904 3.096 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.104 3.896 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.163 0.837 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.383 0.617 42 H 0.270 0.730 43 H 0.065 0.935 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.878 11.659 0.595 21.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.025 4.025 4 O -0.178 6.178 5 C 0.085 3.915 6 C -0.205 4.205 7 C -0.135 4.135 8 C -0.109 4.109 9 N -0.123 5.123 10 C -0.080 4.080 11 C 0.355 3.645 12 O -0.406 6.406 13 N -0.322 5.322 14 C -0.016 4.016 15 C -0.161 4.161 16 C 0.207 3.793 17 O -0.394 6.394 18 C -0.575 4.575 19 H 0.084 0.916 20 C -0.133 4.133 21 N -0.535 5.535 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.017 4.017 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.181 0.819 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.234 0.766 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.291 11.281 0.606 20.654 hybrid contribution -0.600 -0.946 0.406 1.191 sum -17.891 10.335 1.012 20.686 Atomic orbital electron populations 1.21690 0.94397 1.02543 1.01876 1.21460 0.95542 0.94605 1.04531 1.23003 0.78997 0.99469 1.01002 1.86454 1.20455 1.24622 1.86285 1.20015 0.92284 0.85612 0.93634 1.21697 1.00803 0.91907 1.06138 1.22143 0.95827 0.98165 0.97388 1.22804 0.91332 0.96752 0.99984 1.68045 1.38772 0.97391 1.08107 1.20974 0.88531 0.93182 1.05280 1.17243 0.81244 0.86975 0.79074 1.90804 1.71011 1.27567 1.51261 1.48585 1.04124 1.10453 1.69078 1.22562 0.91315 0.86717 1.00970 1.22826 0.95380 0.98203 0.99674 1.19488 0.87659 0.90291 0.81826 1.86092 1.85984 1.36114 1.31259 1.21507 1.30273 0.96092 1.09618 0.91589 1.25085 0.95292 0.97650 0.95315 1.69645 1.43960 1.14935 1.24922 0.86463 0.80827 0.78932 0.80681 1.20056 1.21111 1.20027 1.23023 0.89844 0.87060 1.01793 0.91671 0.92531 0.92532 0.90419 0.90426 0.92106 0.92110 0.84000 0.84293 0.81938 0.89223 0.92165 0.90841 0.90744 0.76589 0.91963 0.91687 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.12 -1.24 6.30 -26.73 -0.17 -1.41 16 3 C 0.05 0.54 4.76 37.16 0.18 0.72 16 4 O -0.27 -4.30 8.20 -40.61 -0.33 -4.63 16 5 C 0.14 2.08 6.71 -38.56 -0.26 1.82 16 6 C -0.18 -1.94 9.13 -39.15 -0.36 -2.30 16 7 C -0.12 -1.07 10.10 -39.36 -0.40 -1.47 16 8 C 0.05 0.58 11.17 -17.55 -0.20 0.38 16 9 N -0.41 -6.43 6.59 -9.71 -0.06 -6.49 16 10 C 0.06 1.08 6.73 -82.89 -0.56 0.52 16 11 C 0.57 12.70 7.83 -12.34 -0.10 12.60 16 12 O -0.53 -13.24 15.47 -16.64 -0.26 -13.49 16 13 N -0.59 -13.43 3.33 -171.64 -0.57 -14.00 16 14 C 0.11 2.14 5.93 -2.53 -0.02 2.12 16 15 C -0.12 -2.62 6.22 -24.59 -0.15 -2.78 16 16 C 0.25 6.27 0.86 -89.94 -0.08 6.20 16 17 O -0.59 -15.36 13.09 -35.23 -0.46 -15.82 16 18 C -0.54 -14.46 8.12 -34.44 -0.28 -14.73 16 19 H 0.07 1.74 7.77 -52.49 -0.41 1.33 16 20 C 0.07 1.86 5.26 -17.82 -0.09 1.77 16 21 N -0.90 -24.47 10.97 55.43 0.61 -23.86 16 22 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 C 0.10 2.67 5.39 -3.07 -0.02 2.65 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.53 7.69 -51.93 -0.40 0.13 16 33 H 0.06 0.53 7.70 -51.93 -0.40 0.13 16 34 H 0.14 1.09 6.46 -52.49 -0.34 0.75 16 35 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.09 1.60 5.87 -51.93 -0.30 1.30 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.07 1.51 8.04 -51.93 -0.42 1.09 16 40 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.38 10.28 7.17 45.56 0.33 10.61 16 42 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.06 1.80 8.01 -51.93 -0.42 1.39 16 44 H 0.07 1.82 7.82 -51.93 -0.41 1.41 16 LS Contribution 360.90 15.07 5.44 5.44 Total: -1.00 -32.40 360.90 -8.49 -40.88 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -5.70 Total: 10.67 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -2.12 Total: 5.43 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.03 Total: -44.35 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -1.05 Total: -33.95 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.40 -8.49 -40.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848762.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.207 kcal (2) G-P(sol) polarization free energy of solvation -32.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds