Wall clock time and date at job start Tue Mar 31 2020 13:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.47126 * 2 1 4 4 C 1.50695 * 109.46897 * 239.99924 * 2 1 3 5 5 H 1.08009 * 119.99871 * 239.99798 * 4 2 1 6 6 C 1.37882 * 120.00479 * 60.00497 * 4 2 1 7 7 N 1.31511 * 119.99320 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00290 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47130 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47038 * 119.99814 * 8 6 4 11 11 H 1.48507 * 109.47168 * 239.99784 * 8 6 4 12 12 N 1.46496 * 109.46620 * 120.00079 * 2 1 3 13 13 C 1.34776 * 119.99917 * 274.99426 * 12 2 1 14 14 O 1.21530 * 120.00142 * 0.02562 * 13 12 2 15 15 C 1.48026 * 119.99782 * 180.02562 * 13 12 2 16 16 C 1.39863 * 120.45584 * 180.02562 * 15 13 12 17 17 C 1.38456 * 118.35416 * 180.27526 * 16 15 13 18 18 C 1.39331 * 119.19115 * 359.49888 * 17 16 15 19 19 C 1.48239 * 119.57900 * 180.23023 * 18 17 16 20 20 O 1.21404 * 120.00025 * 0.27480 * 19 18 17 21 21 O 1.34665 * 120.00275 * 180.27805 * 19 18 17 22 22 C 1.45199 * 116.99954 * 179.97438 * 21 19 18 23 23 C 1.53001 * 109.46883 * 60.00197 * 22 21 19 24 24 C 1.53005 * 109.46838 * 179.97438 * 22 21 19 25 25 C 1.52997 * 109.47411 * 299.99621 * 22 21 19 26 26 N 1.32749 * 120.84359 * 0.51107 * 18 17 16 27 27 C 1.31399 * 121.80279 * 359.74517 * 26 18 17 28 28 H 1.08995 * 109.47412 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47212 * 300.00227 * 1 2 3 30 30 H 1.09002 * 109.46500 * 60.00054 * 1 2 3 31 31 H 0.97002 * 120.00069 * 179.97438 * 7 6 4 32 32 H 0.97004 * 119.99934 * 95.00261 * 12 2 1 33 33 H 1.08002 * 120.81951 * 359.97438 * 16 15 13 34 34 H 1.08001 * 120.40179 * 179.72501 * 17 16 15 35 35 H 1.09004 * 109.47372 * 60.00169 * 23 22 21 36 36 H 1.09000 * 109.46843 * 179.97438 * 23 22 21 37 37 H 1.08992 * 109.47206 * 299.99197 * 23 22 21 38 38 H 1.09000 * 109.47209 * 60.00378 * 24 22 21 39 39 H 1.09000 * 109.47052 * 180.02562 * 24 22 21 40 40 H 1.09001 * 109.47115 * 300.00020 * 24 22 21 41 41 H 1.09000 * 109.46818 * 59.99991 * 25 22 21 42 42 H 1.09000 * 109.47237 * 180.02562 * 25 22 21 43 43 H 1.09000 * 109.47372 * 300.00073 * 25 22 21 44 44 H 1.07998 * 119.63919 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1484 -2.2857 -3.6037 10 1 1.1678 -1.5866 -4.8164 11 1 3.1474 -0.1858 -4.8161 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3571 14 8 1.8577 1.1608 2.4118 15 6 2.6409 -0.7160 3.5656 16 6 2.7777 -0.0277 4.7754 17 6 3.2490 -0.7215 5.8770 18 6 3.5586 -2.0737 5.7470 19 6 4.0589 -2.8262 6.9222 20 8 4.1919 -2.2651 7.9905 21 8 4.3661 -4.1320 6.8047 22 6 4.8508 -4.8050 7.9965 23 6 3.7864 -4.7300 9.0931 24 6 5.1443 -6.2708 7.6708 25 6 6.1319 -4.1235 8.4817 26 7 3.4164 -2.6956 4.5828 27 6 2.9772 -2.0713 3.5133 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 0.7089 1.1614 -3.4844 32 1 2.2490 -1.6318 1.1526 33 1 2.5266 1.0203 4.8473 34 1 3.3716 -0.2215 6.8264 35 1 2.8738 -5.2156 8.7475 36 1 4.1502 -5.2355 9.9876 37 1 3.5770 -3.6859 9.3253 38 1 5.9024 -6.3247 6.8894 39 1 5.5078 -6.7762 8.5655 40 1 4.2314 -6.7561 7.3254 41 1 5.9223 -3.0793 8.7138 42 1 6.4960 -4.6290 9.3761 43 1 6.8901 -4.1770 7.7005 44 1 2.8746 -2.6116 2.5839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593437249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:48 Heat of formation + Delta-G solvation = -108.273056 kcal Electronic energy + Delta-G solvation = -26213.399533 eV Core-core repulsion = 22323.214257 eV Total energy + Delta-G solvation = -3890.185276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.26414 -41.41977 -40.05187 -38.10141 -36.82486 -35.16215 -34.50801 -33.79288 -32.95557 -30.71996 -28.37157 -28.29548 -27.37364 -27.07331 -24.85033 -24.00166 -22.82298 -21.43211 -20.91447 -19.72054 -19.01999 -18.17767 -17.79201 -17.43763 -17.23039 -16.88139 -16.34391 -16.14458 -15.98597 -15.60991 -15.41955 -14.96606 -14.72196 -14.60361 -14.45569 -14.27896 -13.93655 -13.68112 -13.38170 -13.12983 -12.99958 -12.94301 -12.88912 -12.87624 -12.75045 -12.50953 -12.32322 -12.27408 -12.11674 -11.42796 -11.41953 -11.22844 -11.20294 -11.08605 -10.70364 -10.59534 -10.55007 -9.84442 -8.17322 -6.34321 -1.03896 -0.03130 0.99575 1.38498 1.46200 1.48031 1.59364 1.89968 2.22276 2.47918 2.66289 2.83930 3.14057 3.49704 3.53293 3.67704 3.71403 3.78996 3.81335 3.86970 3.94836 4.43833 4.52068 4.61886 4.64944 4.75381 4.77039 4.82665 4.86400 4.88136 4.90737 4.93071 5.08398 5.11844 5.18984 5.25536 5.26358 5.39149 5.40480 5.55671 5.66811 5.86765 6.08684 6.30191 6.67567 6.71491 6.80565 7.25896 7.41750 8.89179 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021689 B = 0.002421 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.663249 B =11564.788047 C =12462.970544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.270 3.730 3 H 0.005 0.995 4 C -0.546 4.546 5 H 0.077 0.923 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.971 3.029 9 H -0.259 1.259 10 H -0.280 1.280 11 H -0.285 1.285 12 N -0.692 5.692 13 C 0.546 3.454 14 O -0.583 6.583 15 C -0.152 4.152 16 C -0.024 4.024 17 C -0.100 4.100 18 C 0.091 3.909 19 C 0.529 3.471 20 O -0.499 6.499 21 O -0.336 6.336 22 C 0.101 3.899 23 C -0.180 4.180 24 C -0.137 4.137 25 C -0.180 4.180 26 N -0.448 5.448 27 C 0.137 3.863 28 H 0.042 0.958 29 H 0.015 0.985 30 H 0.068 0.932 31 H 0.265 0.735 32 H 0.406 0.594 33 H 0.166 0.834 34 H 0.178 0.822 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.103 0.897 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.095 0.905 43 H 0.061 0.939 44 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.873 -13.316 21.655 26.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.167 3.833 3 H 0.023 0.977 4 C -0.584 4.584 5 H 0.095 0.905 6 C -0.185 4.185 7 N -0.554 5.554 8 Si 0.796 3.204 9 H -0.182 1.182 10 H -0.206 1.206 11 H -0.212 1.212 12 N -0.340 5.340 13 C 0.332 3.668 14 O -0.465 6.465 15 C -0.157 4.157 16 C -0.050 4.050 17 C -0.120 4.120 18 C -0.045 4.045 19 C 0.372 3.628 20 O -0.387 6.387 21 O -0.252 6.252 22 C 0.066 3.934 23 C -0.237 4.237 24 C -0.194 4.194 25 C -0.237 4.237 26 N -0.158 5.158 27 C -0.024 4.024 28 H 0.062 0.938 29 H 0.034 0.966 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.243 0.757 33 H 0.183 0.817 34 H 0.196 0.804 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.122 0.878 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 7.871 -13.169 21.856 26.703 hybrid contribution -0.111 0.645 -1.019 1.211 sum 7.759 -12.524 20.837 25.519 Atomic orbital electron populations 1.21922 0.97963 0.99756 0.99843 1.18457 0.91343 0.92169 0.81374 0.97685 1.21561 1.32607 1.13653 0.90568 0.90536 1.25768 0.94871 0.95571 1.02277 1.70048 1.36923 1.23886 1.24590 0.85307 0.78062 0.78560 0.78472 1.18238 1.20554 1.21160 1.46251 1.64001 1.14342 1.09437 1.18467 0.78228 0.86350 0.83735 1.90730 1.52885 1.17289 1.85549 1.21348 1.02777 0.96429 0.95138 1.21927 0.91526 1.01793 0.89751 1.22218 0.96027 0.92621 1.01130 1.20517 1.00574 0.91894 0.91488 1.20653 0.74195 0.81308 0.86619 1.90754 1.49842 1.70267 1.27844 1.86729 1.74956 1.22265 1.41234 1.22672 0.94567 0.93699 0.82490 1.22475 0.98506 1.03847 0.98901 1.21879 1.03056 0.90464 1.03970 1.22475 0.95927 1.02378 1.02962 1.67700 1.10979 1.38678 0.98492 1.23316 0.91548 0.90169 0.97401 0.93848 0.96639 0.91305 0.92536 0.75684 0.81676 0.80421 0.91936 0.88595 0.91690 0.91481 0.87797 0.91451 0.91692 0.88586 0.91972 0.79332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.63 9.26 71.98 0.67 -5.97 16 2 C 0.27 13.40 2.56 44.25 0.11 13.51 16 3 H 0.01 0.31 7.58 -2.39 -0.02 0.29 16 4 C -0.55 -27.72 8.73 25.60 0.22 -27.50 16 5 H 0.08 3.60 7.74 -2.91 -0.02 3.58 16 6 C 0.02 0.80 5.30 84.66 0.45 1.25 16 7 N -0.92 -51.19 11.32 21.45 0.24 -50.94 16 8 Si 0.97 40.90 29.54 68.60 2.03 42.93 16 9 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 10 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 12 N -0.69 -27.12 5.02 -448.81 -2.25 -29.37 16 13 C 0.55 20.84 7.75 86.84 0.67 21.52 16 14 O -0.58 -26.99 16.07 -3.81 -0.06 -27.05 16 15 C -0.15 -4.37 5.90 -19.93 -0.12 -4.48 16 16 C -0.02 -0.58 9.71 22.72 0.22 -0.36 16 17 C -0.10 -2.16 9.62 22.59 0.22 -1.94 16 18 C 0.09 2.24 6.75 41.93 0.28 2.53 16 19 C 0.53 12.69 7.26 70.48 0.51 13.20 16 20 O -0.50 -12.16 11.85 20.15 0.24 -11.92 16 21 O -0.34 -7.67 9.70 -55.74 -0.54 -8.21 16 22 C 0.10 1.66 1.13 -10.79 -0.01 1.65 16 23 C -0.18 -2.70 8.37 71.98 0.60 -2.10 16 24 C -0.14 -1.58 8.85 71.98 0.64 -0.94 16 25 C -0.18 -2.72 8.37 71.98 0.60 -2.12 16 26 N -0.45 -11.62 10.10 -183.96 -1.86 -13.47 16 27 C 0.14 3.44 10.71 85.12 0.91 4.35 16 28 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.01 0.70 8.14 -2.39 -0.02 0.69 16 30 H 0.07 3.70 6.07 -2.39 -0.01 3.68 16 31 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 32 H 0.41 13.00 6.60 -92.71 -0.61 12.39 16 33 H 0.17 3.87 7.73 -2.91 -0.02 3.85 16 34 H 0.18 3.00 7.63 -2.91 -0.02 2.98 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 1.23 5.88 -2.39 -0.01 1.22 16 38 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.06 1.24 5.88 -2.39 -0.01 1.22 16 42 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.19 3.90 6.41 -2.91 -0.02 3.88 16 Total: -1.00 -66.56 368.30 4.19 -62.36 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.42 Total: 23.09 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 5.98 Total: 12.59 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -3.87 Total: -93.79 kcal Atomic # 8 Polarization: -46.82 SS G_CDS: -0.36 Total: -47.18 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -66.56 4.19 -62.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593437249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.910 kcal (2) G-P(sol) polarization free energy of solvation -66.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds