Wall clock time and date at job start Tue Mar 31 2020 12:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47472 * 2 1 4 4 O 1.42908 * 109.46798 * 119.99567 * 2 1 3 5 5 C 1.42897 * 113.99750 * 149.99854 * 4 2 1 6 6 C 1.53004 * 109.47049 * 180.02562 * 5 4 2 7 7 N 1.46496 * 109.46980 * 64.99901 * 6 5 4 8 8 C 1.34787 * 119.99915 * 180.02562 * 7 6 5 9 9 O 1.21360 * 119.99648 * 0.02562 * 8 7 6 10 10 C 1.49357 * 119.99655 * 180.02562 * 8 7 6 11 11 O 1.21367 * 120.00130 * 0.02562 * 10 8 7 12 12 N 1.34780 * 119.99366 * 180.02562 * 10 8 7 13 13 C 1.39743 * 119.99714 * 185.11396 * 12 10 8 14 14 C 1.39344 * 119.95114 * 34.20000 * 13 12 10 15 15 C 1.38468 * 120.41849 * 179.97438 * 14 13 12 16 16 C 1.37693 * 120.33083 * 0.28100 * 15 14 13 17 17 C 1.40744 * 119.89527 * 359.49464 * 16 15 14 18 18 C 1.41413 * 120.20765 * 180.24943 * 17 16 15 19 19 H 1.07999 * 120.00217 * 205.30599 * 18 17 16 20 20 C 1.39933 * 119.99910 * 25.31228 * 18 17 16 21 21 N 1.30826 * 120.00058 * 16.69518 * 20 18 17 22 22 Si 1.86802 * 120.00125 * 196.69109 * 20 18 17 23 23 H 1.48501 * 109.47181 * 89.99670 * 22 20 18 24 24 H 1.48496 * 109.47457 * 210.00328 * 22 20 18 25 25 H 1.48510 * 109.46950 * 330.00156 * 22 20 18 26 26 C 1.38304 * 119.95238 * 214.22580 * 13 12 10 27 27 H 1.08993 * 109.46812 * 300.00723 * 1 2 3 28 28 H 1.08998 * 109.46504 * 60.00572 * 1 2 3 29 29 H 1.09001 * 109.47210 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47692 * 239.99425 * 2 1 3 31 31 H 1.09002 * 109.47201 * 59.99531 * 3 2 1 32 32 H 1.08996 * 109.47150 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46789 * 299.99254 * 3 2 1 34 34 H 1.08998 * 109.47252 * 60.00276 * 5 4 2 35 35 H 1.08997 * 109.47701 * 299.99883 * 5 4 2 36 36 H 1.09000 * 109.47116 * 305.00083 * 6 5 4 37 37 H 1.08997 * 109.47111 * 185.00279 * 6 5 4 38 38 H 0.96993 * 120.00253 * 0.02562 * 7 6 5 39 39 H 0.96996 * 120.00056 * 5.11378 * 12 10 8 40 40 H 1.07990 * 119.79277 * 0.02562 * 14 13 12 41 41 H 1.08007 * 119.83639 * 179.97438 * 15 14 13 42 42 H 1.08009 * 120.05223 * 179.73911 * 16 15 14 43 43 H 0.97001 * 120.00187 * 180.02562 * 21 20 18 44 44 H 1.08005 * 120.15967 * 359.94905 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2659 -1.3245 0.9888 6 6 3.6753 -2.0091 2.2944 7 7 2.7253 -3.0809 2.6026 8 6 2.8869 -3.8256 3.7143 9 8 3.8192 -3.6080 4.4602 10 6 1.9187 -4.9187 4.0281 11 8 0.9867 -5.1366 3.2818 12 7 2.0800 -5.6631 5.1401 13 6 1.2389 -6.7530 5.3793 14 6 0.7652 -7.5136 4.3122 15 6 -0.0684 -8.5960 4.5383 16 6 -0.4432 -8.9291 5.8207 17 6 0.0311 -8.1730 6.9089 18 6 -0.3454 -8.5125 8.2290 19 1 -0.3463 -7.7576 9.0014 20 6 -0.7167 -9.8265 8.5347 21 7 -0.4131 -10.7996 7.7146 22 14 -1.6458 -10.1914 10.1137 23 1 -3.1063 -10.1010 9.8609 24 1 -1.3081 -11.5596 10.5819 25 1 -1.2614 -9.2034 11.1537 26 6 0.8773 -7.0748 6.6749 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6767 1.9564 0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6769 1.9562 -0.8900 34 1 4.0199 -0.5874 0.7127 35 1 3.1809 -2.0707 0.1989 36 1 3.6740 -1.2787 3.1036 37 1 4.6750 -2.4296 2.1862 38 1 1.9801 -3.2546 2.0066 39 1 2.7800 -5.4422 5.7742 40 1 1.0506 -7.2580 3.3026 41 1 -0.4304 -9.1788 3.7042 42 1 -1.0970 -9.7717 5.9915 43 1 -0.6709 -11.7105 7.9263 44 1 1.2442 -6.4862 7.5028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602075523.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:27 Heat of formation + Delta-G solvation = -103.157400 kcal Electronic energy + Delta-G solvation = -25652.743779 eV Core-core repulsion = 21762.780335 eV Total energy + Delta-G solvation = -3889.963445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.57909 -39.08873 -38.48957 -37.14154 -35.48927 -34.44053 -33.11859 -32.86136 -29.88251 -29.69319 -28.47007 -27.59619 -25.33045 -24.84249 -22.67111 -21.73036 -21.21285 -20.90584 -19.83166 -18.38807 -17.64358 -17.33792 -16.69784 -16.00752 -15.70788 -15.52053 -15.32435 -15.02894 -14.92703 -14.60532 -14.15880 -13.95621 -13.45689 -13.29323 -13.02876 -12.96607 -12.90630 -12.62601 -12.44619 -12.26171 -11.89970 -11.70900 -11.63337 -11.57700 -11.31379 -11.15583 -11.08907 -10.64830 -10.53808 -10.14532 -10.01186 -9.78841 -9.43341 -9.35907 -9.18840 -8.97378 -7.50208 -6.97950 -6.76341 -4.38865 1.52857 2.49732 2.78684 2.87455 3.08043 3.11538 3.18506 3.21701 3.56297 3.88683 3.94711 4.37524 4.57384 4.62506 4.63584 4.72369 4.76885 4.79414 4.92115 5.11434 5.21948 5.37702 5.45045 5.47843 5.50669 5.65968 5.78397 5.86397 6.09562 6.23490 6.45999 6.61065 6.81489 6.84737 6.89495 7.00466 7.12722 7.21916 7.49469 7.56362 7.76886 7.95670 8.00321 8.07558 8.23557 8.40320 8.62041 8.87168 8.92664 10.18832 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025497 B = 0.002099 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.916894 B =13338.180598 C =13607.105745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.081 3.919 3 C -0.175 4.175 4 O -0.379 6.379 5 C 0.049 3.951 6 C 0.121 3.879 7 N -0.698 5.698 8 C 0.511 3.489 9 O -0.524 6.524 10 C 0.498 3.502 11 O -0.505 6.505 12 N -0.632 5.632 13 C 0.146 3.854 14 C -0.224 4.224 15 C -0.096 4.096 16 C -0.162 4.162 17 C 0.121 3.879 18 C -0.463 4.463 19 H 0.078 0.922 20 C 0.076 3.924 21 N -0.795 5.795 22 Si 0.910 3.090 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.262 1.262 26 C -0.238 4.238 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.416 0.584 39 H 0.412 0.588 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.121 0.879 43 H 0.281 0.719 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.585 17.153 -13.868 22.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.023 3.977 3 C -0.233 4.233 4 O -0.299 6.299 5 C -0.028 4.028 6 C -0.002 4.002 7 N -0.353 5.353 8 C 0.292 3.708 9 O -0.400 6.400 10 C 0.279 3.721 11 O -0.380 6.380 12 N -0.277 5.277 13 C 0.054 3.946 14 C -0.245 4.245 15 C -0.115 4.115 16 C -0.182 4.182 17 C 0.118 3.882 18 C -0.492 4.492 19 H 0.096 0.904 20 C -0.142 4.142 21 N -0.420 5.420 22 Si 0.734 3.266 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.186 1.186 26 C -0.260 4.260 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.253 0.747 39 H 0.249 0.751 40 H 0.119 0.881 41 H 0.112 0.888 42 H 0.138 0.862 43 H 0.092 0.908 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.516 16.924 -13.738 22.485 hybrid contribution -0.139 -0.141 0.454 0.495 sum 5.377 16.783 -13.284 22.069 Atomic orbital electron populations 1.21877 0.93332 1.03143 1.02579 1.22114 0.95301 0.92358 0.87919 1.22306 1.01400 0.96847 1.02740 1.88012 1.36098 1.69973 1.35769 1.22805 0.86942 0.96028 0.97071 1.21482 0.92782 0.89087 0.96875 1.45647 1.30951 1.33565 1.25094 1.20302 0.85707 0.83036 0.81773 1.90747 1.31917 1.69086 1.48294 1.19939 0.85764 0.83205 0.83229 1.90774 1.30624 1.68376 1.48216 1.43184 1.34173 1.27976 1.22323 1.17443 0.95192 0.87266 0.94673 1.20286 1.08220 0.99525 0.96421 1.20575 0.98232 0.96173 0.96490 1.21416 1.03231 1.02586 0.90955 1.17378 0.87858 0.89435 0.93531 1.19534 1.39952 0.94673 0.95078 0.90356 1.25897 0.93776 0.95969 0.98534 1.69818 1.34867 1.01015 1.36297 0.86288 0.80417 0.78255 0.81604 1.19279 1.20346 1.18638 1.20740 1.06925 1.05374 0.92917 0.91652 0.91267 0.91644 0.92140 0.91649 0.92554 0.91634 0.91395 0.92245 0.90040 0.89428 0.74715 0.75145 0.88094 0.88842 0.86160 0.90848 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.56 37.16 0.36 -0.69 16 2 C 0.08 0.56 3.34 -26.73 -0.09 0.47 16 3 C -0.18 -1.02 9.53 37.16 0.35 -0.67 16 4 O -0.38 -3.45 9.93 -35.23 -0.35 -3.80 16 5 C 0.05 0.34 5.88 37.16 0.22 0.56 16 6 C 0.12 1.10 6.06 -4.04 -0.02 1.08 16 7 N -0.70 -8.39 5.50 -60.76 -0.33 -8.72 16 8 C 0.51 7.83 7.89 -11.62 -0.09 7.74 16 9 O -0.52 -8.78 16.48 5.49 0.09 -8.69 16 10 C 0.50 9.05 7.62 -11.63 -0.09 8.96 16 11 O -0.50 -10.21 14.20 5.48 0.08 -10.13 16 12 N -0.63 -12.15 5.32 -10.34 -0.05 -12.20 16 13 C 0.15 3.34 6.25 -83.82 -0.52 2.82 16 14 C -0.22 -5.28 8.66 -39.09 -0.34 -5.62 16 15 C -0.10 -2.30 10.01 -39.70 -0.40 -2.70 16 16 C -0.16 -4.23 8.69 -38.83 -0.34 -4.57 16 17 C 0.12 3.22 5.57 -106.85 -0.59 2.62 16 18 C -0.46 -12.18 9.05 -37.74 -0.34 -12.52 16 19 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 20 C 0.08 1.89 5.16 -17.35 -0.09 1.80 16 21 N -0.79 -20.37 10.94 55.55 0.61 -19.76 16 22 Si 0.91 18.60 29.59 -169.99 -5.03 13.57 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 24 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 26 C -0.24 -5.82 9.70 -38.67 -0.38 -6.19 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.35 7.79 -51.93 -0.40 -0.06 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.35 7.87 -51.93 -0.41 -0.06 16 35 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.42 4.82 7.94 -40.82 -0.32 4.50 16 39 H 0.41 7.06 8.30 -40.82 -0.34 6.72 16 40 H 0.10 2.31 6.46 -52.49 -0.34 1.97 16 41 H 0.09 2.01 8.06 -52.48 -0.42 1.58 16 42 H 0.12 3.21 6.17 -52.48 -0.32 2.88 16 43 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 44 H 0.10 2.24 8.06 -52.48 -0.42 1.81 16 LS Contribution 376.02 15.07 5.67 5.67 Total: -1.00 -30.47 376.02 -8.01 -38.48 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -6.32 Total: 12.51 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -2.36 Total: -6.91 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.22 Total: -40.69 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.18 Total: -22.63 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.47 -8.01 -38.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602075523.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.679 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds