Wall clock time and date at job start Tue Mar 31 2020 13:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47239 * 2 1 4 4 C 1.53002 * 109.47327 * 239.99813 * 2 1 3 5 5 C 1.50696 * 109.46919 * 64.99798 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47035 * 60.00183 * 9 7 5 11 11 H 1.48503 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47237 * 299.99939 * 9 7 5 13 13 C 1.52999 * 109.47107 * 119.99444 * 2 1 3 14 14 N 1.46903 * 109.47368 * 295.00343 * 13 2 1 15 15 C 1.46898 * 111.00043 * 179.97438 * 14 13 2 16 16 C 1.53002 * 109.47205 * 300.00125 * 15 14 13 17 17 C 1.53003 * 109.47234 * 59.99675 * 15 14 13 18 18 C 1.50697 * 109.47119 * 179.97438 * 15 14 13 19 19 C 1.41378 * 126.80099 * 179.97438 * 18 15 14 20 20 C 1.35448 * 103.98720 * 180.02562 * 19 18 15 21 21 C 1.50704 * 126.78218 * 180.02562 * 20 19 18 22 22 F 1.39899 * 109.46802 * 89.99745 * 21 20 19 23 23 F 1.39897 * 109.46958 * 210.00012 * 21 20 19 24 24 F 1.39902 * 109.46789 * 329.99995 * 21 20 19 25 25 O 1.34047 * 106.44647 * 0.02562 * 20 19 18 26 26 N 1.20928 * 111.56400 * 359.70675 * 25 20 19 27 27 H 1.08997 * 109.46686 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47004 * 300.00313 * 1 2 3 29 29 H 1.08997 * 109.47105 * 60.00166 * 1 2 3 30 30 H 1.09000 * 109.46497 * 305.00064 * 4 2 1 31 31 H 1.08999 * 109.46623 * 185.00128 * 4 2 1 32 32 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 33 33 H 1.09008 * 109.47057 * 55.00147 * 13 2 1 34 34 H 1.09005 * 109.47222 * 174.99830 * 13 2 1 35 35 H 1.00898 * 110.99650 * 303.95303 * 14 13 2 36 36 H 1.08994 * 109.47099 * 59.99546 * 16 15 14 37 37 H 1.08994 * 109.47142 * 180.02562 * 16 15 14 38 38 H 1.09009 * 109.46575 * 299.99906 * 16 15 14 39 39 H 1.09006 * 109.46859 * 59.99968 * 17 15 14 40 40 H 1.09004 * 109.47113 * 179.97438 * 17 15 14 41 41 H 1.09004 * 109.47180 * 300.00315 * 17 15 14 42 42 H 1.07997 * 128.01135 * 0.03982 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0569 -2.4765 6 1 1.0800 0.9740 -2.3757 7 6 1.9925 -0.4024 -3.7283 8 7 2.6705 -1.5225 -3.8513 9 14 1.4976 0.5619 -5.2497 10 1 2.0897 1.9224 -5.1877 11 1 1.9928 -0.1381 -6.4622 12 1 0.0176 0.6683 -5.3087 13 6 2.0400 -0.7211 1.2493 14 7 1.6514 0.0376 2.4457 15 6 2.1247 -0.6269 3.6673 16 6 1.5151 -2.0274 3.7550 17 6 3.6504 -0.7363 3.6299 18 6 1.7087 0.1789 4.8708 19 6 1.9719 -0.1256 6.2261 20 6 1.3962 0.8931 6.9083 21 6 1.3725 1.0780 8.4038 22 9 2.4925 1.8167 8.8001 23 9 0.2087 1.7623 8.7706 24 9 1.3942 -0.1735 9.0287 25 8 0.8517 1.7045 5.9907 26 7 1.0396 1.2955 4.8683 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6054 -1.7198 -1.2950 31 1 3.1264 -0.7995 -1.2054 32 1 2.9272 -2.0234 -3.0613 33 1 1.6054 -1.7197 1.2953 34 1 3.1264 -0.7994 1.2057 35 1 1.9881 0.9874 2.3966 36 1 1.8163 -2.6100 2.8845 37 1 1.8659 -2.5203 4.6616 38 1 0.4281 -1.9495 3.7817 39 1 4.0848 0.2615 3.5674 40 1 4.0016 -1.2290 4.5366 41 1 3.9516 -1.3190 2.7593 42 1 2.5081 -0.9739 6.6252 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602670622.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:57 Heat of formation + Delta-G solvation = -119.760153 kcal Electronic energy + Delta-G solvation = -27163.168834 eV Core-core repulsion = 22730.628700 eV Total energy + Delta-G solvation = -4432.540134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 3.79 seconds Orbital eigenvalues (eV) -51.39041 -48.91614 -48.87939 -46.37840 -39.81578 -37.29347 -35.18762 -34.22083 -33.52716 -31.22973 -28.50546 -28.28802 -27.69259 -27.11838 -25.42249 -24.28090 -23.32315 -21.33640 -20.94679 -19.92021 -19.65735 -19.41817 -18.83258 -18.74121 -17.63207 -16.74569 -16.22143 -15.98700 -15.71781 -15.70183 -15.62894 -15.29418 -15.26845 -15.21267 -15.02908 -15.00078 -14.93329 -14.44747 -13.98769 -13.76938 -13.67265 -13.46571 -13.05175 -12.95336 -12.81691 -12.62223 -12.52343 -12.43227 -12.31009 -11.97072 -11.89099 -11.55575 -11.39773 -11.31698 -11.17322 -10.58252 -10.52560 -9.45215 -8.65776 -6.34584 -0.16737 0.75474 0.89166 1.51431 1.59504 1.78648 1.90351 2.38075 2.56509 2.74664 2.92913 3.06900 3.12436 3.17900 3.60718 3.71872 3.91498 3.97079 4.02630 4.10757 4.23999 4.37429 4.49233 4.58232 4.61747 4.71734 4.79020 4.85310 4.85661 4.89140 5.05000 5.14019 5.22496 5.30515 5.33359 5.46951 5.62107 5.90655 6.08261 6.21292 6.26153 6.62828 6.89590 7.45271 8.75235 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.032921 B = 0.002277 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.306065 B =12296.187618 C =12655.750207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.068 4.068 3 H 0.046 0.954 4 C 0.019 3.981 5 C -0.606 4.606 6 H 0.048 0.952 7 C -0.041 4.041 8 N -0.941 5.941 9 Si 1.113 2.887 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.076 3.924 14 N -0.677 5.677 15 C 0.185 3.815 16 C -0.137 4.137 17 C -0.176 4.176 18 C 0.028 3.972 19 C -0.128 4.128 20 C -0.150 4.150 21 C 0.577 3.423 22 F -0.161 7.161 23 F -0.166 7.166 24 F -0.150 7.150 25 O 0.129 5.871 26 N -0.341 5.341 27 H 0.037 0.963 28 H 0.061 0.939 29 H 0.034 0.966 30 H -0.010 1.010 31 H -0.015 1.015 32 H 0.255 0.745 33 H 0.074 0.926 34 H 0.032 0.968 35 H 0.340 0.660 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.093 0.907 41 H 0.068 0.932 42 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.107 1.712 29.051 29.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.087 4.087 3 H 0.065 0.935 4 C -0.019 4.019 5 C -0.644 4.644 6 H 0.067 0.933 7 C -0.238 4.238 8 N -0.579 5.579 9 Si 0.935 3.065 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.196 1.196 13 C -0.052 4.052 14 N -0.307 5.307 15 C 0.093 3.907 16 C -0.195 4.195 17 C -0.236 4.236 18 C -0.131 4.131 19 C -0.149 4.149 20 C -0.215 4.215 21 C 0.521 3.479 22 F -0.142 7.142 23 F -0.148 7.148 24 F -0.131 7.131 25 O 0.054 5.946 26 N -0.037 5.037 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.008 0.992 31 H 0.004 0.996 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.158 0.842 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.112 0.888 41 H 0.087 0.913 42 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -1.178 2.212 26.484 26.603 hybrid contribution 1.253 -0.348 1.915 2.315 sum 0.075 1.864 28.400 28.461 Atomic orbital electron populations 1.21457 0.94886 1.00337 1.00173 1.20893 0.96527 0.98133 0.93146 0.93527 1.19157 0.93845 0.94905 0.93965 1.22432 1.38021 1.10372 0.93566 0.93335 1.27336 0.94121 0.97293 1.05053 1.70916 1.38207 1.15895 1.32862 0.82978 0.76895 0.74568 0.72053 1.19584 1.20907 1.19596 1.21968 0.97365 0.97606 0.88275 1.60529 1.63925 1.05562 1.00713 1.19387 0.93944 0.93054 0.84340 1.21922 1.01090 0.92655 1.03798 1.22537 0.93806 1.02708 1.04533 1.23703 0.99171 0.93587 0.96605 1.22853 1.00993 1.00638 0.90395 1.24306 1.07245 0.97147 0.92839 1.16312 0.74474 0.74690 0.82381 1.93302 1.52291 1.77126 1.91495 1.93279 1.48939 1.79973 1.92568 1.93292 1.96162 1.40671 1.82991 1.84992 1.57295 1.42474 1.09873 1.73968 1.16266 1.14325 0.99168 0.94383 0.91961 0.94723 0.99220 0.99624 0.93538 0.90725 0.95020 0.84164 0.91417 0.88873 0.92678 0.92942 0.88775 0.91272 0.76238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.40 8.89 71.98 0.64 -3.76 16 2 C -0.07 -2.78 2.48 -10.79 -0.03 -2.81 16 3 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 4 C 0.02 0.97 3.76 29.85 0.11 1.08 16 5 C -0.61 -34.78 8.41 25.60 0.22 -34.56 16 6 H 0.05 2.74 7.06 -2.91 -0.02 2.72 16 7 C -0.04 -2.41 5.46 84.66 0.46 -1.94 16 8 N -0.94 -58.84 13.65 21.45 0.29 -58.55 16 9 Si 1.11 51.13 29.90 68.60 2.05 53.18 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 13 C 0.08 2.45 4.29 86.30 0.37 2.82 16 14 N -0.68 -18.64 5.33 -473.87 -2.53 -21.17 16 15 C 0.18 3.84 0.90 2.78 0.00 3.84 16 16 C -0.14 -2.50 8.14 71.98 0.59 -1.92 16 17 C -0.18 -3.12 8.14 71.98 0.59 -2.54 16 18 C 0.03 0.56 5.70 43.58 0.25 0.81 16 19 C -0.13 -1.75 10.38 22.40 0.23 -1.52 16 20 C -0.15 -2.37 6.79 25.04 0.17 -2.20 16 21 C 0.58 7.54 3.55 71.24 0.25 7.79 16 22 F -0.16 -2.19 17.30 44.97 0.78 -1.41 16 23 F -0.17 -2.51 17.30 44.97 0.78 -1.73 16 24 F -0.15 -1.70 17.05 44.97 0.77 -0.94 16 25 O 0.13 2.77 11.20 71.56 0.80 3.58 16 26 N -0.34 -8.41 11.65 -49.55 -0.58 -8.99 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 2.22 7.75 -2.39 -0.02 2.20 16 29 H 0.03 1.48 6.95 -2.39 -0.02 1.46 16 30 H -0.01 -0.58 8.00 -2.39 -0.02 -0.60 16 31 H -0.01 -0.79 8.01 -2.39 -0.02 -0.81 16 32 H 0.26 16.07 7.22 -92.71 -0.67 15.40 16 33 H 0.07 2.38 6.30 -2.38 -0.02 2.36 16 34 H 0.03 1.01 6.31 -2.38 -0.02 1.00 16 35 H 0.34 9.81 8.60 -89.70 -0.77 9.03 16 36 H 0.07 1.34 6.40 -2.39 -0.02 1.33 16 37 H 0.09 1.10 8.07 -2.39 -0.02 1.08 16 38 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.09 1.10 8.07 -2.38 -0.02 1.08 16 41 H 0.07 1.37 6.40 -2.38 -0.02 1.35 16 42 H 0.22 1.28 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -67.16 357.36 6.60 -60.56 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.39 Total: 10.38 kcal Atomic # 6 Polarization: -38.76 SS G_CDS: 3.85 Total: -34.91 kcal Atomic # 7 Polarization: -85.90 SS G_CDS: -2.81 Total: -88.71 kcal Atomic # 8 Polarization: 2.77 SS G_CDS: 0.80 Total: 3.58 kcal Atomic # 9 Polarization: -6.41 SS G_CDS: 2.32 Total: -4.09 kcal Atomic # 14 Polarization: 51.13 SS G_CDS: 2.05 Total: 53.18 kcal Total: -67.16 6.60 -60.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602670622.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.200 kcal (2) G-P(sol) polarization free energy of solvation -67.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.79 seconds