Wall clock time and date at job start Tue Mar 31 2020 12:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47548 * 2 1 4 4 O 1.21278 * 119.99774 * 359.97438 * 3 2 1 5 5 N 1.34770 * 120.00018 * 180.02562 * 3 2 1 6 6 C 1.46504 * 119.99807 * 179.97438 * 5 3 2 7 7 H 1.08991 * 109.47503 * 34.99443 * 6 5 3 8 8 C 1.52999 * 109.47081 * 274.99292 * 6 5 3 9 9 C 1.50707 * 109.46954 * 154.99687 * 6 5 3 10 10 O 1.21281 * 120.00030 * 359.97438 * 9 6 5 11 11 N 1.34777 * 119.99735 * 179.97438 * 9 6 5 12 12 C 1.46496 * 119.99689 * 180.02562 * 11 9 6 13 13 C 1.50706 * 109.46995 * 179.97438 * 12 11 9 14 14 C 1.38294 * 119.93130 * 269.72831 * 13 12 11 15 15 C 1.38099 * 120.07055 * 179.72623 * 14 13 12 16 16 C 1.38885 * 119.92916 * 0.56465 * 15 14 13 17 17 O 1.35746 * 120.07221 * 179.68553 * 16 15 14 18 18 C 1.34828 * 117.00240 * 174.48968 * 17 16 15 19 19 H 1.08006 * 120.00054 * 5.05118 * 18 17 16 20 20 C 1.38655 * 120.00332 * 185.05591 * 18 17 16 21 21 N 1.31553 * 119.99844 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00136 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47289 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47041 * 119.99838 * 22 20 18 25 25 H 1.48501 * 109.47247 * 240.00056 * 22 20 18 26 26 C 1.38888 * 119.85809 * 359.70827 * 16 15 14 27 27 C 1.38097 * 119.93011 * 359.97438 * 26 16 15 28 28 H 1.08995 * 109.47788 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46838 * 300.00450 * 1 2 3 30 30 H 1.09001 * 109.46982 * 60.00069 * 1 2 3 31 31 H 1.08999 * 109.46788 * 239.99362 * 2 1 3 32 32 H 1.09007 * 109.46657 * 119.99614 * 2 1 3 33 33 H 0.97004 * 120.00303 * 359.97438 * 5 3 2 34 34 H 1.09002 * 109.46847 * 60.00144 * 8 6 5 35 35 H 1.08995 * 109.47476 * 180.02562 * 8 6 5 36 36 H 1.09004 * 109.47028 * 300.00725 * 8 6 5 37 37 H 0.97003 * 119.99910 * 0.27264 * 11 9 6 38 38 H 1.08996 * 109.47372 * 299.99564 * 12 11 9 39 39 H 1.09002 * 109.47654 * 59.99995 * 12 11 9 40 40 H 1.08001 * 119.96614 * 359.97036 * 14 13 12 41 41 H 1.08000 * 120.04137 * 180.26759 * 15 14 13 42 42 H 0.97003 * 120.00423 * 179.97438 * 21 20 18 43 43 H 1.08002 * 120.03290 * 179.97438 * 26 16 15 44 44 H 1.07997 * 119.96090 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2444 2.3426 -0.0005 5 7 3.3575 1.6669 -0.0005 6 6 3.8459 3.0482 -0.0011 7 1 3.1736 3.6715 0.5883 8 6 3.8970 3.5704 -1.4383 9 6 5.2276 3.0926 0.5990 10 8 5.7524 2.0712 0.9892 11 7 5.8800 4.2675 0.7020 12 6 7.2233 4.3106 1.2848 13 6 7.7262 5.7313 1.2832 14 6 8.4381 6.2100 0.1985 15 6 8.8954 7.5131 0.1916 16 6 8.6498 8.3395 1.2805 17 8 9.1035 9.6189 1.2794 18 6 8.7338 10.4003 2.3141 19 1 8.1730 9.9792 3.1355 20 6 9.0735 11.7446 2.3237 21 7 9.7570 12.2574 1.3235 22 14 8.5607 12.8273 3.7569 23 1 7.8062 12.0156 4.7454 24 1 9.7696 13.3978 4.4037 25 1 7.6980 13.9295 3.2607 26 6 7.9395 7.8539 2.3707 27 6 7.4792 6.5519 2.3687 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.9878 0.9296 -0.0005 34 1 2.8977 3.5382 -1.8723 35 1 4.2608 4.5978 -1.4388 36 1 4.5694 2.9469 -2.0277 37 1 5.4586 5.0849 0.3936 38 1 7.1873 3.9388 2.3088 39 1 7.8955 3.6870 0.6953 40 1 8.6332 5.5654 -0.6457 41 1 9.4475 7.8878 -0.6576 42 1 9.9944 13.1980 1.3300 43 1 7.7473 8.4939 3.2192 44 1 6.9264 6.1739 3.2160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727676875.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:35 Heat of formation + Delta-G solvation = -89.244589 kcal Electronic energy + Delta-G solvation = -25499.871054 eV Core-core repulsion = 21610.510914 eV Total energy + Delta-G solvation = -3889.360140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -40.61147 -39.50541 -39.02758 -36.96655 -35.28500 -34.62434 -33.21398 -32.42964 -31.17322 -30.32892 -29.61978 -26.15841 -25.51001 -24.89139 -23.40576 -22.11100 -20.72894 -20.62259 -20.42252 -18.21906 -18.09924 -17.23955 -16.86076 -16.37401 -16.01073 -15.58414 -15.24197 -14.77556 -14.66454 -14.43326 -14.10164 -13.93945 -13.75833 -13.74874 -13.41505 -13.06947 -12.84207 -12.81839 -12.61937 -12.48399 -12.18663 -12.08511 -11.89773 -11.72120 -11.50742 -11.45474 -11.03572 -10.85261 -10.73915 -10.50623 -10.18372 -10.05279 -9.47218 -9.44776 -9.12620 -8.95243 -8.34225 -7.38251 -6.56891 -4.15754 1.97309 2.07748 2.31852 2.43375 2.69719 3.05254 3.07513 3.13054 3.34071 3.87269 4.32601 4.42558 4.55606 4.70157 4.72632 4.78775 4.86013 4.97642 5.09620 5.15345 5.18361 5.31350 5.34674 5.43758 5.49383 5.58502 5.59843 5.73313 5.79292 5.83471 5.87215 6.06519 6.07774 6.29098 6.33119 6.54308 6.74787 6.90512 7.08545 7.19367 7.21322 7.30546 7.39599 7.66178 7.87756 7.92137 8.01477 8.88523 9.55985 10.60532 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022893 B = 0.002021 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.761782 B =13854.181772 C =14382.918261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.514 3.486 4 O -0.541 6.541 5 N -0.714 5.714 6 C 0.123 3.877 7 H 0.114 0.886 8 C -0.159 4.159 9 C 0.508 3.492 10 O -0.546 6.546 11 N -0.713 5.713 12 C 0.179 3.821 13 C -0.218 4.218 14 C -0.053 4.053 15 C -0.195 4.195 16 C 0.161 3.839 17 O -0.172 6.172 18 C -0.394 4.394 19 H 0.094 0.906 20 C 0.040 3.960 21 N -0.858 5.858 22 Si 0.942 3.058 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.237 4.237 27 C -0.050 4.050 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.410 0.590 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.405 0.595 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.112 0.888 41 H 0.119 0.881 42 H 0.271 0.729 43 H 0.129 0.871 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.125 -20.041 -3.269 23.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.301 3.699 4 O -0.418 6.418 5 N -0.368 5.368 6 C 0.014 3.986 7 H 0.132 0.868 8 C -0.218 4.218 9 C 0.293 3.707 10 O -0.424 6.424 11 N -0.365 5.365 12 C 0.058 3.942 13 C -0.219 4.219 14 C -0.072 4.072 15 C -0.215 4.215 16 C 0.106 3.894 17 O -0.075 6.075 18 C -0.470 4.470 19 H 0.112 0.888 20 C -0.165 4.165 21 N -0.492 5.492 22 Si 0.767 3.233 23 H -0.190 1.190 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.256 4.256 27 C -0.069 4.069 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.247 0.753 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.240 0.760 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.131 0.869 41 H 0.137 0.863 42 H 0.081 0.919 43 H 0.146 0.854 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.039 -19.727 -3.198 23.331 hybrid contribution 0.011 0.702 0.656 0.961 sum -12.028 -19.025 -2.542 22.651 Atomic orbital electron populations 1.21534 0.92883 1.01634 1.03425 1.21625 0.98681 0.93446 1.04578 1.20834 0.81673 0.92120 0.75312 1.90712 1.55243 1.46499 1.49358 1.45825 1.07539 1.07946 1.75538 1.20781 0.93637 0.85559 0.98610 0.86839 1.22130 1.03616 1.01791 0.94243 1.20566 0.87220 0.84063 0.78873 1.90682 1.68521 1.33602 1.49563 1.46317 1.18330 1.09319 1.62509 1.20021 0.81661 0.94254 0.98312 1.19171 1.09592 0.95372 0.97806 1.20520 0.95919 0.94213 0.96583 1.20220 1.08578 0.93921 0.98745 1.19449 0.90826 0.86247 0.92868 1.83976 1.61987 1.16544 1.44965 1.21414 1.36764 0.90237 0.98545 0.88824 1.25330 0.96315 0.96225 0.98600 1.70041 1.34954 1.14124 1.30092 0.85623 0.78602 0.79557 0.79525 1.19019 1.20037 1.20030 1.21168 1.06920 0.96779 1.00756 1.20643 0.96753 0.93002 0.96481 0.92030 0.91937 0.91946 0.88795 0.88725 0.75339 0.90828 0.90637 0.91745 0.76027 0.91440 0.91340 0.86949 0.86339 0.91878 0.85376 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.20 37.16 0.34 -0.56 16 2 C -0.14 -0.89 6.42 -27.88 -0.18 -1.07 16 3 C 0.51 4.99 7.79 -10.99 -0.09 4.91 16 4 O -0.54 -7.19 15.64 5.56 0.09 -7.10 16 5 N -0.71 -6.53 4.95 -54.93 -0.27 -6.81 16 6 C 0.12 1.20 2.98 -69.08 -0.21 0.99 16 7 H 0.11 1.18 7.58 -51.93 -0.39 0.79 16 8 C -0.16 -1.33 9.38 37.16 0.35 -0.98 16 9 C 0.51 5.88 7.22 -10.98 -0.08 5.81 16 10 O -0.55 -7.83 15.84 5.56 0.09 -7.74 16 11 N -0.71 -8.00 5.44 -61.47 -0.33 -8.34 16 12 C 0.18 2.31 5.80 -5.19 -0.03 2.28 16 13 C -0.22 -3.30 5.25 -104.58 -0.55 -3.85 16 14 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 15 C -0.20 -3.81 9.99 -39.39 -0.39 -4.20 16 16 C 0.16 3.65 6.65 -39.10 -0.26 3.39 16 17 O -0.17 -4.71 9.76 0.06 0.00 -4.71 16 18 C -0.39 -10.56 9.49 30.89 0.29 -10.27 16 19 H 0.09 2.32 5.20 -52.48 -0.27 2.05 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -24.37 13.67 55.48 0.76 -23.62 16 22 Si 0.94 19.85 29.55 -169.99 -5.02 14.82 16 23 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 25 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 26 C -0.24 -4.79 9.17 -39.39 -0.36 -5.15 16 27 C -0.05 -0.83 9.69 -39.61 -0.38 -1.22 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.49 8.10 -51.92 -0.42 0.07 16 30 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.41 3.35 7.79 -40.82 -0.32 3.03 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.56 7.57 -51.93 -0.39 0.17 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.40 4.06 7.89 -40.82 -0.32 3.73 16 38 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 39 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 40 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 42 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.13 2.62 5.64 -52.49 -0.30 2.33 16 44 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 377.62 15.07 5.69 5.69 Total: -1.00 -32.21 377.62 -7.22 -39.43 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.19 Total: 8.55 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -2.02 Total: -10.19 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.15 Total: -38.76 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: 0.18 Total: -19.55 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.21 -7.22 -39.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727676875.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.816 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds