Wall clock time and date at job start Tue Mar 31 2020 12:59:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.35976 * 117.00145 * 2 1
4 4 C 1.38714 * 119.99782 * 359.97438 * 3 2 1
5 5 C 1.38157 * 119.96280 * 179.97438 * 4 3 2
6 6 C 1.38752 * 120.28340 * 359.97438 * 5 4 3
7 7 C 1.38969 * 119.96443 * 0.16024 * 6 5 4
8 8 C 1.38477 * 120.00153 * 179.97438 * 3 2 1
9 9 N 1.39846 * 121.86795 * 179.71175 * 7 6 5
10 10 C 1.46901 * 111.00092 * 144.89219 * 9 7 6
11 11 C 1.50695 * 109.47251 * 165.98064 * 10 9 7
12 12 O 1.21283 * 120.00290 * 354.21274 * 11 10 9
13 13 N 1.34778 * 120.00236 * 174.20833 * 11 10 9
14 14 C 1.46499 * 120.00181 * 179.97438 * 13 11 10
15 15 C 1.50701 * 109.47078 * 180.02562 * 14 13 11
16 16 H 1.07998 * 119.99609 * 0.02562 * 15 14 13
17 17 C 1.37876 * 119.99880 * 180.02562 * 15 14 13
18 18 N 1.31517 * 119.99845 * 180.02562 * 17 15 14
19 19 Si 1.86797 * 120.00070 * 359.97438 * 17 15 14
20 20 H 1.48505 * 109.46677 * 90.00593 * 19 17 15
21 21 H 1.48501 * 109.47247 * 210.00107 * 19 17 15
22 22 H 1.48497 * 109.47311 * 330.00096 * 19 17 15
23 23 C 1.46751 * 112.14025 * 20.09948 * 9 7 6
24 24 C 1.53427 * 108.74094 * 309.61299 * 23 9 7
25 25 H 1.08999 * 109.77668 * 303.75336 * 24 23 9
26 26 C 1.52999 * 109.77416 * 182.95014 * 24 23 9
27 27 O 1.36253 * 118.68769 * 180.44263 * 6 5 4
28 28 H 1.09002 * 109.47259 * 180.02562 * 1 2 3
29 29 H 1.09001 * 109.47428 * 299.99922 * 1 2 3
30 30 H 1.09005 * 109.47028 * 60.00086 * 1 2 3
31 31 H 1.07998 * 120.01611 * 359.96610 * 4 3 2
32 32 H 1.08003 * 119.85892 * 179.97438 * 5 4 3
33 33 H 1.08000 * 119.89800 * 0.02562 * 8 3 2
34 34 H 1.08998 * 109.47046 * 285.97943 * 10 9 7
35 35 H 1.08993 * 109.47161 * 45.97778 * 10 9 7
36 36 H 0.97001 * 119.99445 * 0.02562 * 13 11 10
37 37 H 1.09000 * 109.47238 * 300.00796 * 14 13 11
38 38 H 1.09004 * 109.46896 * 60.00607 * 14 13 11
39 39 H 0.97001 * 119.99900 * 179.97438 * 18 17 15
40 40 H 1.09000 * 109.61534 * 69.43032 * 23 9 7
41 41 H 1.09001 * 109.62238 * 189.79378 * 23 9 7
42 42 H 1.08999 * 109.47683 * 59.99795 * 26 24 23
43 43 H 1.09002 * 109.47451 * 180.02562 * 26 24 23
44 44 H 1.09000 * 109.47629 * 299.99809 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0463 1.2115 0.0000
4 6 1.2908 2.3749 -0.0005
5 6 1.9188 3.6055 0.0000
6 6 3.3041 3.6841 0.0016
7 6 4.0653 2.5214 -0.0007
8 6 3.4292 1.2840 0.0005
9 7 5.4634 2.5542 -0.0051
10 6 6.0185 1.4450 0.7820
11 6 7.4882 1.3019 0.4813
12 8 7.9986 1.9790 -0.3859
13 7 8.2357 0.4217 1.1762
14 6 9.6644 0.2822 0.8836
15 6 10.2640 -0.7595 1.7926
16 1 9.6428 -1.2672 2.5157
17 6 11.6055 -1.0644 1.7011
18 7 12.1287 -1.9739 2.4941
19 14 12.6796 -0.1868 0.4500
20 1 13.2542 1.0376 1.0632
21 1 13.7790 -1.0887 0.0221
22 1 11.8596 0.1884 -0.7299
23 6 5.9878 3.8434 0.4601
24 6 5.2865 4.9685 -0.3120
25 1 5.4220 4.8206 -1.3834
26 6 5.8683 6.3215 0.1025
27 8 3.8894 4.9144 0.0113
28 1 -0.3634 -1.0277 0.0005
29 1 -0.3634 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 0.2123 2.3186 -0.0015
32 1 1.3289 4.5102 -0.0008
33 1 4.0158 0.3772 0.0005
34 1 5.8832 1.6497 1.8440
35 1 5.5027 0.5208 0.5215
36 1 7.8275 -0.1201 1.8696
37 1 9.7945 -0.0236 -0.1545
38 1 10.1635 1.2375 1.0462
39 1 13.0724 -2.1887 2.4295
40 1 5.7923 3.9545 1.5267
41 1 7.0616 3.8889 0.2782
42 1 6.9351 6.3419 -0.1202
43 1 5.3665 7.1170 -0.4484
44 1 5.7176 6.4697 1.1718
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000743855081.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:59:36
Heat of formation + Delta-G solvation = -65.289866 kcal
Electronic energy + Delta-G solvation = -26906.686124 eV
Core-core repulsion = 23018.364739 eV
Total energy + Delta-G solvation = -3888.321385 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.157 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-41.36753 -39.60969 -38.97102 -36.91384 -36.16768 -34.31861 -32.54719 -32.36714
-30.75687 -29.66232 -28.34256 -27.54233 -27.03209 -24.95762 -22.99720 -22.81338
-21.70385 -20.21240 -19.92612 -18.69180 -17.91475 -17.35989 -16.88714 -16.31656
-15.92187 -15.84513 -15.69413 -15.27250 -15.04155 -14.66284 -14.33907 -14.14898
-14.08996 -13.68958 -13.34077 -13.23948 -13.07496 -12.75525 -12.54509 -12.52716
-12.41646 -12.31898 -12.19873 -11.55155 -11.45298 -11.40889 -11.06222 -10.79203
-10.71673 -10.51781 -10.12596 -9.99987 -9.53715 -9.18888 -8.81585 -8.37044
-8.21784 -7.57709 -6.24703 -4.27427 1.08278 1.30257 2.94901 3.02055
3.09218 3.24087 3.30626 3.36445 3.39169 3.61020 4.02345 4.30201
4.36727 4.51437 4.70721 4.76957 4.86172 4.90048 4.91450 4.98345
5.07951 5.10871 5.17884 5.21214 5.25274 5.27356 5.34163 5.44343
5.52665 5.65136 5.72767 5.83075 5.87893 5.91407 6.12017 6.22705
6.63350 6.76220 6.88769 7.01893 7.12903 7.14850 7.33679 7.37285
8.07732 8.44473 8.70564 8.84449 9.34926 10.87207
Molecular weight = 320.16amu
Principal moments of inertia in cm(-1)
A = 0.014500 B = 0.003134 C = 0.002645
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1930.544050 B = 8932.572508 C =10581.534435
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.316 6.316
3 C 0.125 3.875
4 C -0.206 4.206
5 C -0.084 4.084
6 C 0.056 3.944
7 C 0.093 3.907
8 C -0.165 4.165
9 N -0.464 5.464
10 C 0.031 3.969
11 C 0.501 3.499
12 O -0.540 6.540
13 N -0.704 5.704
14 C 0.222 3.778
15 C -0.545 4.545
16 H 0.080 0.920
17 C 0.078 3.922
18 N -0.892 5.892
19 Si 0.877 3.123
20 H -0.273 1.273
21 H -0.283 1.283
22 H -0.260 1.260
23 C 0.018 3.982
24 C 0.088 3.912
25 H 0.085 0.915
26 C -0.143 4.143
27 O -0.317 6.317
28 H 0.098 0.902
29 H 0.054 0.946
30 H 0.054 0.946
31 H 0.132 0.868
32 H 0.133 0.867
33 H 0.140 0.860
34 H 0.076 0.924
35 H 0.117 0.883
36 H 0.397 0.603
37 H 0.026 0.974
38 H 0.021 0.979
39 H 0.268 0.732
40 H 0.056 0.944
41 H 0.117 0.883
42 H 0.083 0.917
43 H 0.070 0.930
44 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.208 11.206 -3.290 25.981
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.230 6.230
3 C 0.079 3.921
4 C -0.226 4.226
5 C -0.103 4.103
6 C 0.009 3.991
7 C -0.006 4.006
8 C -0.187 4.187
9 N -0.177 5.177
10 C -0.097 4.097
11 C 0.284 3.716
12 O -0.418 6.418
13 N -0.353 5.353
14 C 0.100 3.900
15 C -0.583 4.583
16 H 0.098 0.902
17 C -0.126 4.126
18 N -0.529 5.529
19 Si 0.703 3.297
20 H -0.199 1.199
21 H -0.209 1.209
22 H -0.185 1.185
23 C -0.108 4.108
24 C 0.031 3.969
25 H 0.103 0.897
26 C -0.200 4.200
27 O -0.232 6.232
28 H 0.117 0.883
29 H 0.073 0.927
30 H 0.073 0.927
31 H 0.150 0.850
32 H 0.151 0.849
33 H 0.158 0.842
34 H 0.093 0.907
35 H 0.135 0.865
36 H 0.231 0.769
37 H 0.044 0.956
38 H 0.039 0.961
39 H 0.078 0.922
40 H 0.074 0.926
41 H 0.136 0.864
42 H 0.102 0.898
43 H 0.089 0.911
44 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -22.361 11.518 -4.281 25.515
hybrid contribution 0.200 0.023 0.376 0.426
sum -22.162 11.541 -3.905 25.290
Atomic orbital electron populations
1.23034 0.78507 1.03843 1.01256 1.86084 1.21214 1.26707 1.88998
1.18574 0.91628 0.84206 0.97650 1.20899 0.99836 0.91309 1.10506
1.20154 0.90923 0.97939 1.01293 1.18462 0.91898 0.83071 1.05702
1.18639 0.88202 0.92719 1.01053 1.20047 0.91760 0.96818 1.10059
1.58123 1.03083 1.04446 1.52080 1.22325 0.94971 0.95571 0.96869
1.20195 0.87651 0.81161 0.82562 1.90648 1.73467 1.45466 1.32248
1.46164 1.11677 1.39634 1.37851 1.19499 0.76248 0.97043 0.97184
1.21082 0.95250 1.21662 1.20289 0.90212 1.24796 0.97663 0.94600
0.95543 1.69880 1.13552 1.31479 1.37956 0.86816 0.80534 0.79828
0.82505 1.19860 1.20863 1.18479 1.23027 1.03020 0.87024 0.97709
1.22697 0.78399 0.95920 0.99835 0.89748 1.21754 1.01263 0.94294
1.02723 1.86263 1.25000 1.25709 1.86213 0.88331 0.92709 0.92711
0.85007 0.84871 0.84212 0.90650 0.86501 0.76933 0.95595 0.96146
0.92214 0.92593 0.86450 0.89846 0.91132 0.91492
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.19 9.81 101.05 0.99 1.18 16
2 O -0.32 -3.46 10.50 -19.66 -0.21 -3.66 16
3 C 0.13 1.47 6.68 -39.32 -0.26 1.20 16
4 C -0.21 -2.08 9.04 -39.44 -0.36 -2.44 16
5 C -0.08 -0.92 9.93 -39.42 -0.39 -1.31 16
6 C 0.06 0.73 6.48 -39.12 -0.25 0.48 16
7 C 0.09 1.29 5.83 -83.60 -0.49 0.80 16
8 C -0.17 -2.13 8.98 -39.16 -0.35 -2.48 16
9 N -0.46 -6.81 4.29 -172.19 -0.74 -7.55 16
10 C 0.03 0.44 5.11 -4.98 -0.03 0.41 16
11 C 0.50 9.18 7.49 -10.99 -0.08 9.10 16
12 O -0.54 -11.76 14.80 5.55 0.08 -11.68 16
13 N -0.70 -13.74 5.55 -61.47 -0.34 -14.09 16
14 C 0.22 5.34 4.50 -5.19 -0.02 5.32 16
15 C -0.55 -14.71 9.83 -34.44 -0.34 -15.05 16
16 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16
17 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16
18 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16
19 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16
20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16
21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
22 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16
23 C 0.02 0.25 4.60 -3.68 -0.02 0.23 16
24 C 0.09 1.05 3.66 -26.51 -0.10 0.96 16
25 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16
26 C -0.14 -1.30 9.61 37.16 0.36 -0.94 16
27 O -0.32 -4.12 10.08 -20.55 -0.21 -4.33 16
28 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16
29 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16
30 H 0.05 0.30 7.66 -51.93 -0.40 -0.09 16
31 H 0.13 0.96 6.29 -52.49 -0.33 0.63 16
32 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16
33 H 0.14 1.73 5.82 -52.49 -0.31 1.42 16
34 H 0.08 0.92 8.03 -51.93 -0.42 0.50 16
35 H 0.12 1.46 5.47 -51.93 -0.28 1.17 16
36 H 0.40 6.77 8.32 -40.82 -0.34 6.43 16
37 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16
38 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16
39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16
40 H 0.06 0.71 8.06 -51.93 -0.42 0.29 16
41 H 0.12 1.76 6.42 -51.93 -0.33 1.42 16
42 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16
43 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16
44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
LS Contribution 357.83 15.07 5.39 5.39
Total: -1.00 -33.18 357.83 -7.45 -40.63
By element:
Atomic # 1 Polarization: 10.79 SS G_CDS: -6.11 Total: 4.68 kcal
Atomic # 6 Polarization: 0.97 SS G_CDS: -1.43 Total: -0.46 kcal
Atomic # 7 Polarization: -46.80 SS G_CDS: -0.31 Total: -47.11 kcal
Atomic # 8 Polarization: -19.34 SS G_CDS: -0.33 Total: -19.67 kcal
Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal
Total LS contribution 5.39 Total: 5.39 kcal
Total: -33.18 -7.45 -40.63 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000743855081.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.658 kcal
(2) G-P(sol) polarization free energy of solvation -33.177 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.836 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.290 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds