Wall clock time and date at job start Tue Mar 31 2020 12:59:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.35976 * 117.00145 * 2 1
4 4 C 1.38714 * 119.99782 * 359.97438 * 3 2 1
5 5 C 1.38157 * 119.96280 * 179.97438 * 4 3 2
6 6 C 1.38752 * 120.28340 * 359.97438 * 5 4 3
7 7 C 1.38969 * 119.96443 * 0.16024 * 6 5 4
8 8 C 1.38477 * 120.00153 * 179.97438 * 3 2 1
9 9 N 1.39846 * 121.86795 * 179.71175 * 7 6 5
10 10 C 1.46901 * 111.00092 * 144.89219 * 9 7 6
11 11 C 1.50695 * 109.47251 * 165.98064 * 10 9 7
12 12 O 1.21283 * 120.00290 * 354.21274 * 11 10 9
13 13 N 1.34778 * 120.00236 * 174.20833 * 11 10 9
14 14 C 1.46499 * 120.00181 * 179.97438 * 13 11 10
15 15 C 1.50701 * 109.47078 * 180.02562 * 14 13 11
16 16 H 1.07998 * 119.99609 * 0.02562 * 15 14 13
17 17 C 1.37876 * 119.99880 * 180.02562 * 15 14 13
18 18 N 1.31517 * 119.99845 * 180.02562 * 17 15 14
19 19 Si 1.86797 * 120.00070 * 359.97438 * 17 15 14
20 20 H 1.48505 * 109.46677 * 90.00593 * 19 17 15
21 21 H 1.48501 * 109.47247 * 210.00107 * 19 17 15
22 22 H 1.48497 * 109.47311 * 330.00096 * 19 17 15
23 23 C 1.46751 * 112.14025 * 20.09948 * 9 7 6
24 24 C 1.53427 * 108.74094 * 309.61299 * 23 9 7
25 25 H 1.08999 * 109.77668 * 303.75336 * 24 23 9
26 26 C 1.52999 * 109.77416 * 182.95014 * 24 23 9
27 27 O 1.36253 * 118.68769 * 180.44263 * 6 5 4
28 28 H 1.09002 * 109.47259 * 180.02562 * 1 2 3
29 29 H 1.09001 * 109.47428 * 299.99922 * 1 2 3
30 30 H 1.09005 * 109.47028 * 60.00086 * 1 2 3
31 31 H 1.07998 * 120.01611 * 359.96610 * 4 3 2
32 32 H 1.08003 * 119.85892 * 179.97438 * 5 4 3
33 33 H 1.08000 * 119.89800 * 0.02562 * 8 3 2
34 34 H 1.08998 * 109.47046 * 285.97943 * 10 9 7
35 35 H 1.08993 * 109.47161 * 45.97778 * 10 9 7
36 36 H 0.97001 * 119.99445 * 0.02562 * 13 11 10
37 37 H 1.09000 * 109.47238 * 300.00796 * 14 13 11
38 38 H 1.09004 * 109.46896 * 60.00607 * 14 13 11
39 39 H 0.97001 * 119.99900 * 179.97438 * 18 17 15
40 40 H 1.09000 * 109.61534 * 69.43032 * 23 9 7
41 41 H 1.09001 * 109.62238 * 189.79378 * 23 9 7
42 42 H 1.08999 * 109.47683 * 59.99795 * 26 24 23
43 43 H 1.09002 * 109.47451 * 180.02562 * 26 24 23
44 44 H 1.09000 * 109.47629 * 299.99809 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0463 1.2115 0.0000
4 6 1.2908 2.3749 -0.0005
5 6 1.9188 3.6055 0.0000
6 6 3.3041 3.6841 0.0016
7 6 4.0653 2.5214 -0.0007
8 6 3.4292 1.2840 0.0005
9 7 5.4634 2.5542 -0.0051
10 6 6.0185 1.4450 0.7820
11 6 7.4882 1.3019 0.4813
12 8 7.9986 1.9790 -0.3859
13 7 8.2357 0.4217 1.1762
14 6 9.6644 0.2822 0.8836
15 6 10.2640 -0.7595 1.7926
16 1 9.6428 -1.2672 2.5157
17 6 11.6055 -1.0644 1.7011
18 7 12.1287 -1.9739 2.4941
19 14 12.6796 -0.1868 0.4500
20 1 13.2542 1.0376 1.0632
21 1 13.7790 -1.0887 0.0221
22 1 11.8596 0.1884 -0.7299
23 6 5.9878 3.8434 0.4601
24 6 5.2865 4.9685 -0.3120
25 1 5.4220 4.8206 -1.3834
26 6 5.8683 6.3215 0.1025
27 8 3.8894 4.9144 0.0113
28 1 -0.3634 -1.0277 0.0005
29 1 -0.3634 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 0.2123 2.3186 -0.0015
32 1 1.3289 4.5102 -0.0008
33 1 4.0158 0.3772 0.0005
34 1 5.8832 1.6497 1.8440
35 1 5.5027 0.5208 0.5215
36 1 7.8275 -0.1201 1.8696
37 1 9.7945 -0.0236 -0.1545
38 1 10.1635 1.2375 1.0462
39 1 13.0724 -2.1887 2.4295
40 1 5.7923 3.9545 1.5267
41 1 7.0616 3.8889 0.2782
42 1 6.9351 6.3419 -0.1202
43 1 5.3665 7.1170 -0.4484
44 1 5.7176 6.4697 1.1718
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000743855081.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:59:35
Heat of formation + Delta-G solvation = -89.624499 kcal
Electronic energy + Delta-G solvation = -26907.741353 eV
Core-core repulsion = 23018.364739 eV
Total energy + Delta-G solvation = -3889.376614 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.157 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-42.33919 -40.64696 -40.20372 -37.89509 -37.15776 -36.10732 -34.43734 -33.36669
-31.63300 -31.03481 -29.57366 -28.62017 -27.88886 -26.03693 -24.30129 -23.78848
-23.18447 -21.48228 -21.09826 -19.68368 -19.10801 -18.75843 -17.93916 -17.69487
-17.19134 -17.02503 -16.61372 -16.35918 -16.14904 -16.05305 -15.71456 -15.34029
-15.20034 -15.00529 -14.56977 -14.26135 -14.21183 -14.13825 -13.91780 -13.75429
-13.27129 -13.12440 -13.08145 -13.00809 -12.78164 -12.55769 -12.31364 -12.17173
-11.94505 -11.67211 -11.58261 -11.48993 -11.08365 -10.92675 -10.63482 -9.96500
-9.29165 -8.51178 -8.40781 -6.47996 0.19451 0.40416 1.32070 1.34790
1.46980 1.61914 1.93329 2.18809 2.27292 2.39887 2.61034 2.87439
2.94710 3.39615 3.58577 3.79537 3.88353 3.93906 3.99038 4.08100
4.10659 4.23917 4.31618 4.41448 4.45762 4.47728 4.52329 4.64697
4.73574 4.77478 4.83358 4.86970 4.99807 5.00821 5.01725 5.16312
5.24474 5.28681 5.38729 5.46894 5.66143 5.90318 6.07489 6.30272
6.51831 6.52878 6.78715 7.13892 7.34280 8.73977
Molecular weight = 320.16amu
Principal moments of inertia in cm(-1)
A = 0.014500 B = 0.003134 C = 0.002645
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1930.544050 B = 8932.572508 C =10581.534435
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 O -0.335 6.335
3 C 0.121 3.879
4 C -0.195 4.195
5 C -0.081 4.081
6 C 0.035 3.965
7 C 0.078 3.922
8 C -0.181 4.181
9 N -0.482 5.482
10 C 0.043 3.957
11 C 0.503 3.497
12 O -0.574 6.574
13 N -0.703 5.703
14 C 0.234 3.766
15 C -0.547 4.547
16 H 0.060 0.940
17 C 0.026 3.974
18 N -0.931 5.931
19 Si 0.938 3.062
20 H -0.264 1.264
21 H -0.274 1.274
22 H -0.260 1.260
23 C 0.020 3.980
24 C 0.089 3.911
25 H 0.072 0.928
26 C -0.137 4.137
27 O -0.321 6.321
28 H 0.115 0.885
29 H 0.068 0.932
30 H 0.067 0.933
31 H 0.164 0.836
32 H 0.156 0.844
33 H 0.138 0.862
34 H 0.098 0.902
35 H 0.134 0.866
36 H 0.409 0.591
37 H 0.012 0.988
38 H 0.014 0.986
39 H 0.272 0.728
40 H 0.062 0.938
41 H 0.098 0.902
42 H 0.089 0.911
43 H 0.082 0.918
44 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -25.406 12.297 -3.613 28.456
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 O -0.249 6.249
3 C 0.075 3.925
4 C -0.214 4.214
5 C -0.100 4.100
6 C -0.012 4.012
7 C -0.021 4.021
8 C -0.202 4.202
9 N -0.197 5.197
10 C -0.085 4.085
11 C 0.290 3.710
12 O -0.454 6.454
13 N -0.354 5.354
14 C 0.111 3.889
15 C -0.585 4.585
16 H 0.078 0.922
17 C -0.174 4.174
18 N -0.570 5.570
19 Si 0.761 3.239
20 H -0.189 1.189
21 H -0.200 1.200
22 H -0.185 1.185
23 C -0.106 4.106
24 C 0.033 3.967
25 H 0.090 0.910
26 C -0.194 4.194
27 O -0.237 6.237
28 H 0.133 0.867
29 H 0.087 0.913
30 H 0.085 0.915
31 H 0.182 0.818
32 H 0.173 0.827
33 H 0.156 0.844
34 H 0.116 0.884
35 H 0.152 0.848
36 H 0.245 0.755
37 H 0.030 0.970
38 H 0.032 0.968
39 H 0.082 0.918
40 H 0.080 0.920
41 H 0.116 0.884
42 H 0.108 0.892
43 H 0.101 0.899
44 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -24.607 12.605 -4.590 28.026
hybrid contribution 0.708 -0.386 0.493 0.945
sum -23.899 12.219 -4.097 27.152
Atomic orbital electron populations
1.23363 0.76241 1.05519 1.02520 1.86068 1.23613 1.26458 1.88810
1.18705 0.91452 0.85159 0.97177 1.21243 1.01353 0.90286 1.08522
1.20490 0.90232 0.99228 1.00077 1.18781 0.92845 0.82882 1.06733
1.18689 0.87566 0.93431 1.02428 1.20125 0.92709 0.96455 1.10935
1.58113 1.04081 1.04703 1.52764 1.22243 0.91438 0.96674 0.98175
1.20864 0.89196 0.79672 0.81311 1.90630 1.74581 1.46549 1.33658
1.45985 1.10194 1.40530 1.38688 1.19092 0.78719 0.95556 0.95552
1.21292 0.95303 1.21855 1.20046 0.92225 1.25601 0.99162 0.95299
0.97342 1.69984 1.14224 1.33065 1.39739 0.85855 0.78874 0.79066
0.80079 1.18856 1.19950 1.18474 1.22985 1.01960 0.87400 0.98270
1.22749 0.78207 0.96824 0.98953 0.91008 1.21756 1.01545 0.92935
1.03181 1.86253 1.25203 1.25838 1.86364 0.86683 0.91294 0.91458
0.81823 0.82674 0.84447 0.88420 0.84824 0.75498 0.96975 0.96786
0.91840 0.92033 0.88378 0.89248 0.89869 0.90968
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.18 9.81 113.37 1.11 1.29 16
2 O -0.34 -6.65 10.50 -93.27 -0.98 -7.63 16
3 C 0.12 2.61 6.68 22.44 0.15 2.76 16
4 C -0.19 -3.36 9.04 22.36 0.20 -3.16 16
5 C -0.08 -1.58 9.93 22.37 0.22 -1.36 16
6 C 0.03 0.86 6.48 22.57 0.15 1.01 16
7 C 0.08 2.08 5.83 38.25 0.22 2.31 16
8 C -0.18 -4.50 8.98 22.54 0.20 -4.30 16
9 N -0.48 -14.06 4.29 -698.70 -3.00 -17.06 16
10 C 0.04 1.18 5.11 85.56 0.44 1.62 16
11 C 0.50 18.46 7.49 87.66 0.66 19.11 16
12 O -0.57 -25.28 14.80 -3.04 -0.04 -25.32 16
13 N -0.70 -27.48 5.55 -466.78 -2.59 -30.07 16
14 C 0.23 11.33 4.50 85.63 0.38 11.72 16
15 C -0.55 -29.93 9.83 25.60 0.25 -29.68 16
16 H 0.06 3.42 7.84 -2.91 -0.02 3.40 16
17 C 0.03 1.48 5.47 84.65 0.46 1.94 16
18 N -0.93 -55.46 13.96 21.45 0.30 -55.16 16
19 Si 0.94 43.81 27.47 68.60 1.88 45.70 16
20 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16
21 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16
22 H -0.26 -12.08 6.54 99.48 0.65 -11.43 16
23 C 0.02 0.54 4.60 86.47 0.40 0.94 16
24 C 0.09 2.11 3.66 30.74 0.11 2.22 16
25 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16
26 C -0.14 -2.34 9.61 71.98 0.69 -1.65 16
27 O -0.32 -8.02 10.08 -96.44 -0.97 -8.99 16
28 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16
29 H 0.07 0.51 7.66 -2.39 -0.02 0.49 16
30 H 0.07 0.52 7.66 -2.38 -0.02 0.50 16
31 H 0.16 1.70 6.29 -2.91 -0.02 1.68 16
32 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16
33 H 0.14 3.33 5.82 -2.91 -0.02 3.31 16
34 H 0.10 2.25 8.03 -2.39 -0.02 2.24 16
35 H 0.13 3.23 5.47 -2.39 -0.01 3.21 16
36 H 0.41 13.90 8.32 -92.71 -0.77 13.13 16
37 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16
38 H 0.01 0.71 7.57 -2.38 -0.02 0.69 16
39 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16
40 H 0.06 1.54 8.06 -2.39 -0.02 1.52 16
41 H 0.10 3.01 6.42 -2.39 -0.02 2.99 16
42 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16
43 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16
44 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16
Total: -1.00 -71.80 357.83 0.46 -71.34
By element:
Atomic # 1 Polarization: 22.23 SS G_CDS: 0.21 Total: 22.44 kcal
Atomic # 6 Polarization: -0.88 SS G_CDS: 5.65 Total: 4.77 kcal
Atomic # 7 Polarization: -97.00 SS G_CDS: -5.29 Total: -102.29 kcal
Atomic # 8 Polarization: -39.96 SS G_CDS: -2.00 Total: -41.95 kcal
Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.70 kcal
Total: -71.80 0.46 -71.34 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000743855081.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.288 kcal
(2) G-P(sol) polarization free energy of solvation -71.797 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.085 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.461 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.337 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.624 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds