Wall clock time and date at job start Tue Mar 31 2020 13:39:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08999 * 109.47298 * 2 1
4 4 O 1.42903 * 109.47402 * 120.00181 * 2 1 3
5 5 C 1.53002 * 109.47259 * 240.00559 * 2 1 3
6 6 H 1.08995 * 110.88867 * 56.11721 * 5 2 1
7 7 C 1.55165 * 111.00445 * 180.02562 * 5 2 1
8 8 C 1.54321 * 102.94204 * 153.61082 * 7 5 2
9 9 N 1.47026 * 107.27443 * 337.80935 * 8 7 5
10 10 C 1.34772 * 125.65275 * 178.90489 * 9 8 7
11 11 O 1.21588 * 120.00083 * 180.02562 * 10 9 8
12 12 N 1.34775 * 119.99818 * 0.02562 * 10 9 8
13 13 C 1.39943 * 120.00129 * 185.41291 * 12 10 9
14 14 C 1.38955 * 120.03767 * 213.36231 * 13 12 10
15 15 C 1.38163 * 120.07078 * 179.97438 * 14 13 12
16 16 C 1.38166 * 120.13254 * 359.97438 * 15 14 13
17 17 C 1.38908 * 120.07146 * 359.72806 * 16 15 14
18 18 O 1.35750 * 120.03133 * 180.28000 * 17 16 15
19 19 C 1.34829 * 117.00503 * 6.07467 * 18 17 16
20 20 H 1.08006 * 120.00014 * 5.39936 * 19 18 17
21 21 C 1.38648 * 120.00492 * 185.39249 * 19 18 17
22 22 N 1.31560 * 120.00441 * 180.02562 * 21 19 18
23 23 Si 1.86806 * 119.99923 * 0.02562 * 21 19 18
24 24 H 1.48502 * 109.46967 * 89.99920 * 23 21 19
25 25 H 1.48500 * 109.47169 * 209.99697 * 23 21 19
26 26 H 1.48496 * 109.46862 * 330.00105 * 23 21 19
27 27 C 1.38704 * 120.03296 * 33.34129 * 13 12 10
28 28 C 1.47432 * 108.69999 * 359.16488 * 9 8 7
29 29 H 1.09005 * 109.47015 * 179.97438 * 1 2 3
30 30 H 1.08997 * 109.47251 * 299.99842 * 1 2 3
31 31 H 1.09004 * 109.46924 * 59.99974 * 1 2 3
32 32 H 0.96693 * 113.99788 * 300.00268 * 4 2 1
33 33 H 1.08996 * 110.71927 * 35.25087 * 7 5 2
34 34 H 1.08991 * 110.71650 * 271.97632 * 7 5 2
35 35 H 1.08996 * 109.88602 * 218.39091 * 8 7 5
36 36 H 1.09005 * 110.01136 * 97.29523 * 8 7 5
37 37 H 0.96999 * 120.00248 * 5.41389 * 12 10 9
38 38 H 1.08003 * 119.96702 * 0.02562 * 14 13 12
39 39 H 1.08000 * 119.92886 * 180.02562 * 15 14 13
40 40 H 1.08004 * 119.96044 * 180.02562 * 16 15 14
41 41 H 0.96999 * 120.00089 * 179.97438 * 22 21 19
42 42 H 1.08000 * 120.07171 * 0.02562 * 27 13 12
43 43 H 1.08999 * 110.36306 * 142.74276 * 28 9 8
44 44 H 1.09003 * 110.36350 * 265.06621 * 28 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 8 2.0064 -0.6737 1.1668
5 6 2.0400 -0.7211 -1.2493
6 1 1.6343 -0.2667 -2.1532
7 6 3.5911 -0.7424 -1.2849
8 6 3.9003 -1.9993 -2.1253
9 7 2.7204 -2.8735 -2.0537
10 6 2.5850 -4.0626 -2.6733
11 8 1.5596 -4.7030 -2.5428
12 7 3.5862 -4.5420 -3.4377
13 6 3.4041 -5.7198 -4.1713
14 6 4.4731 -6.5834 -4.3769
15 6 4.2940 -7.7467 -5.1006
16 6 3.0521 -8.0551 -5.6216
17 6 1.9781 -7.1989 -5.4143
18 8 0.7569 -7.5056 -5.9217
19 6 0.6229 -8.7126 -6.5075
20 1 1.4389 -9.4196 -6.4803
21 6 -0.5624 -9.0462 -7.1447
22 7 -0.6934 -10.2241 -7.7159
23 14 -1.9737 -7.8232 -7.1923
24 1 -1.8512 -6.9730 -8.4036
25 1 -3.2639 -8.5574 -7.2312
26 1 -1.9276 -6.9670 -5.9799
27 6 2.1563 -6.0264 -4.6936
28 6 1.7073 -2.2309 -1.1967
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 1.7210 -0.2702 1.9979
33 1 3.9986 -0.8414 -0.2788
34 1 3.9779 0.1523 -1.7725
35 1 4.7689 -2.5147 -1.7156
36 1 4.0908 -1.7179 -3.1610
37 1 4.4329 -4.0708 -3.4793
38 1 5.4448 -6.3456 -3.9698
39 1 5.1263 -8.4165 -5.2586
40 1 2.9151 -8.9654 -6.1865
41 1 -1.5228 -10.4576 -8.1613
42 1 1.3239 -5.3568 -4.5353
43 1 0.7071 -2.4134 -1.5897
44 1 1.7870 -2.5992 -0.1738
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000752499188.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:39:56
Heat of formation + Delta-G solvation = -69.538386 kcal
Electronic energy + Delta-G solvation = -26582.466808 eV
Core-core repulsion = 22693.961193 eV
Total energy + Delta-G solvation = -3888.505615 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.157 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-40.64884 -39.32961 -38.51313 -36.96523 -36.26991 -34.10652 -32.57530 -32.29613
-30.69463 -29.55136 -28.85448 -27.98585 -25.19121 -24.70133 -22.71453 -22.16441
-21.24624 -20.46395 -19.83741 -18.37756 -17.94116 -17.72164 -17.26954 -16.34157
-15.67893 -15.20302 -15.13871 -14.90912 -14.72020 -14.44477 -14.15482 -13.85435
-13.77821 -13.57691 -13.16512 -13.08117 -12.86683 -12.66679 -12.49760 -12.28140
-12.20626 -12.11608 -11.61572 -11.45481 -11.11021 -11.09053 -10.97525 -10.93099
-10.77113 -10.36470 -10.19145 -9.91518 -9.71209 -9.29135 -8.79858 -8.69824
-7.68642 -7.23063 -6.34432 -4.00356 2.06015 2.30824 2.56693 3.27826
3.31893 3.34331 3.51175 3.74809 3.86044 4.13766 4.25228 4.32568
4.46329 4.59113 4.64854 4.82130 4.88275 4.99372 5.04522 5.12475
5.16890 5.27688 5.36004 5.46951 5.48001 5.62439 5.64451 5.72378
5.78935 5.79724 5.97455 6.03803 6.14933 6.20921 6.36387 6.53581
6.83089 7.00070 7.18396 7.21519 7.23568 7.40298 7.67676 7.88033
7.98443 8.10986 8.67149 9.01536 9.65747 10.73231
Molecular weight = 320.16amu
Principal moments of inertia in cm(-1)
A = 0.016020 B = 0.002940 C = 0.002554
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1747.379161 B = 9522.393714 C =10961.450456
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C 0.114 3.886
3 H 0.060 0.940
4 O -0.563 6.563
5 C -0.099 4.099
6 H 0.096 0.904
7 C -0.121 4.121
8 C 0.098 3.902
9 N -0.637 5.637
10 C 0.717 3.283
11 O -0.560 6.560
12 N -0.680 5.680
13 C 0.195 3.805
14 C -0.229 4.229
15 C -0.059 4.059
16 C -0.234 4.234
17 C 0.175 3.825
18 O -0.215 6.215
19 C -0.386 4.386
20 H 0.107 0.893
21 C 0.064 3.936
22 N -0.881 5.881
23 Si 0.902 3.098
24 H -0.274 1.274
25 H -0.282 1.282
26 H -0.258 1.258
27 C -0.188 4.188
28 C 0.135 3.865
29 H 0.069 0.931
30 H 0.059 0.941
31 H 0.067 0.933
32 H 0.378 0.622
33 H 0.087 0.913
34 H 0.080 0.920
35 H 0.066 0.934
36 H 0.066 0.934
37 H 0.401 0.599
38 H 0.109 0.891
39 H 0.115 0.885
40 H 0.134 0.866
41 H 0.279 0.721
42 H 0.130 0.870
43 H 0.076 0.924
44 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.642 23.533 14.638 29.343
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.248 4.248
2 C 0.055 3.945
3 H 0.078 0.922
4 O -0.369 6.369
5 C -0.118 4.118
6 H 0.114 0.886
7 C -0.159 4.159
8 C -0.026 4.026
9 N -0.377 5.377
10 C 0.420 3.580
11 O -0.435 6.435
12 N -0.327 5.327
13 C 0.101 3.899
14 C -0.251 4.251
15 C -0.077 4.077
16 C -0.254 4.254
17 C 0.122 3.878
18 O -0.119 6.119
19 C -0.462 4.462
20 H 0.124 0.876
21 C -0.139 4.139
22 N -0.519 5.519
23 Si 0.728 3.272
24 H -0.199 1.199
25 H -0.208 1.208
26 H -0.181 1.181
27 C -0.209 4.209
28 C 0.012 3.988
29 H 0.088 0.912
30 H 0.078 0.922
31 H 0.086 0.914
32 H 0.226 0.774
33 H 0.106 0.894
34 H 0.098 0.902
35 H 0.084 0.916
36 H 0.084 0.916
37 H 0.236 0.764
38 H 0.127 0.873
39 H 0.133 0.867
40 H 0.152 0.848
41 H 0.089 0.911
42 H 0.148 0.852
43 H 0.095 0.905
44 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 8.748 22.596 14.127 28.048
hybrid contribution -0.353 0.937 0.222 1.026
sum 8.395 23.533 14.349 28.813
Atomic orbital electron populations
1.22557 0.96121 1.03517 1.02615 1.21561 0.92846 0.94692 0.85380
0.92214 1.86531 1.76879 1.57631 1.15863 1.22448 0.96282 0.95907
0.97207 0.88589 1.22618 0.95194 0.96844 1.01243 1.22011 0.88886
0.91377 1.00306 1.47559 1.18584 1.19023 1.52532 1.15442 0.83899
0.80116 0.78566 1.91019 1.28609 1.57839 1.66005 1.42498 1.16086
1.26331 1.47774 1.16925 0.94253 0.85667 0.93030 1.20294 0.97718
0.97050 1.09994 1.20539 0.96373 0.95191 0.95646 1.21287 0.92799
1.03280 1.08012 1.18847 0.85098 0.92349 0.91487 1.83596 1.26348
1.36220 1.65780 1.20778 1.03303 0.88632 1.33476 0.87576 1.24446
0.97976 0.96665 0.94854 1.69649 1.27675 1.20006 1.34596 0.86215
0.80226 0.80911 0.79856 1.19942 1.20778 1.18143 1.20039 0.97483
0.99289 1.04133 1.21990 0.92043 0.89915 0.94860 0.91234 0.92208
0.91378 0.77430 0.89442 0.90161 0.91594 0.91596 0.76400 0.87258
0.86732 0.84836 0.91129 0.85246 0.90539 0.90378
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -1.06 9.40 37.16 0.35 -0.71 16
2 C 0.11 0.66 3.40 -26.73 -0.09 0.57 16
3 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16
4 O -0.56 -3.67 11.45 -35.23 -0.40 -4.07 16
5 C -0.10 -0.73 2.90 -88.58 -0.26 -0.99 16
6 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16
7 C -0.12 -0.79 6.37 -24.89 -0.16 -0.95 16
8 C 0.10 0.81 6.16 -3.06 -0.02 0.79 16
9 N -0.64 -8.07 3.33 -176.37 -0.59 -8.66 16
10 C 0.72 12.22 8.22 -86.92 -0.71 11.50 16
11 O -0.56 -12.28 14.29 5.29 0.08 -12.20 16
12 N -0.68 -10.51 5.30 -14.24 -0.08 -10.58 16
13 C 0.20 3.72 6.28 -83.72 -0.53 3.20 16
14 C -0.23 -3.98 9.96 -39.34 -0.39 -4.37 16
15 C -0.06 -1.09 10.03 -39.64 -0.40 -1.49 16
16 C -0.23 -5.27 9.13 -39.36 -0.36 -5.63 16
17 C 0.18 4.38 6.64 -39.13 -0.26 4.12 16
18 O -0.21 -6.07 8.58 0.05 0.00 -6.07 16
19 C -0.39 -11.35 9.90 30.88 0.31 -11.05 16
20 H 0.11 3.15 5.53 -52.48 -0.29 2.86 16
21 C 0.06 1.85 5.49 -17.52 -0.10 1.76 16
22 N -0.88 -26.18 13.96 55.48 0.77 -25.41 16
23 Si 0.90 22.76 28.62 -169.99 -4.86 17.89 16
24 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16
25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
26 H -0.26 -6.67 7.11 56.52 0.40 -6.27 16
27 C -0.19 -4.31 8.60 -39.21 -0.34 -4.65 16
28 C 0.13 1.52 5.57 -2.64 -0.01 1.51 16
29 H 0.07 0.50 7.52 -51.93 -0.39 0.11 16
30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16
31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16
32 H 0.38 1.00 9.08 45.56 0.41 1.41 16
33 H 0.09 0.61 7.42 -51.93 -0.39 0.22 16
34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16
35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
37 H 0.40 4.58 7.82 -40.82 -0.32 4.26 16
38 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16
39 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16
40 H 0.13 3.11 5.71 -52.48 -0.30 2.81 16
41 H 0.28 7.65 8.31 -40.82 -0.34 7.31 16
42 H 0.13 3.15 6.42 -52.49 -0.34 2.81 16
43 H 0.08 0.97 7.98 -51.93 -0.41 0.56 16
44 H 0.08 0.95 7.11 -51.93 -0.37 0.58 16
LS Contribution 360.90 15.07 5.44 5.44
Total: -1.00 -35.80 360.90 -7.94 -43.74
By element:
Atomic # 1 Polarization: 11.63 SS G_CDS: -5.33 Total: 6.30 kcal
Atomic # 6 Polarization: -3.43 SS G_CDS: -2.97 Total: -6.40 kcal
Atomic # 7 Polarization: -44.76 SS G_CDS: 0.11 Total: -44.65 kcal
Atomic # 8 Polarization: -22.01 SS G_CDS: -0.33 Total: -22.33 kcal
Atomic # 14 Polarization: 22.76 SS G_CDS: -4.86 Total: 17.89 kcal
Total LS contribution 5.44 Total: 5.44 kcal
Total: -35.80 -7.94 -43.74 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000752499188.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.794 kcal
(2) G-P(sol) polarization free energy of solvation -35.805 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.598 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.744 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.538 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds