Wall clock time and date at job start Tue Mar 31 2020 13:39:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08999 * 109.47298 * 2 1
4 4 O 1.42903 * 109.47402 * 120.00181 * 2 1 3
5 5 C 1.53002 * 109.47259 * 240.00559 * 2 1 3
6 6 H 1.08995 * 110.88867 * 56.11721 * 5 2 1
7 7 C 1.55165 * 111.00445 * 180.02562 * 5 2 1
8 8 C 1.54321 * 102.94204 * 153.61082 * 7 5 2
9 9 N 1.47026 * 107.27443 * 337.80935 * 8 7 5
10 10 C 1.34772 * 125.65275 * 178.90489 * 9 8 7
11 11 O 1.21588 * 120.00083 * 180.02562 * 10 9 8
12 12 N 1.34775 * 119.99818 * 0.02562 * 10 9 8
13 13 C 1.39943 * 120.00129 * 185.41291 * 12 10 9
14 14 C 1.38955 * 120.03767 * 213.36231 * 13 12 10
15 15 C 1.38163 * 120.07078 * 179.97438 * 14 13 12
16 16 C 1.38166 * 120.13254 * 359.97438 * 15 14 13
17 17 C 1.38908 * 120.07146 * 359.72806 * 16 15 14
18 18 O 1.35750 * 120.03133 * 180.28000 * 17 16 15
19 19 C 1.34829 * 117.00503 * 6.07467 * 18 17 16
20 20 H 1.08006 * 120.00014 * 5.39936 * 19 18 17
21 21 C 1.38648 * 120.00492 * 185.39249 * 19 18 17
22 22 N 1.31560 * 120.00441 * 180.02562 * 21 19 18
23 23 Si 1.86806 * 119.99923 * 0.02562 * 21 19 18
24 24 H 1.48502 * 109.46967 * 89.99920 * 23 21 19
25 25 H 1.48500 * 109.47169 * 209.99697 * 23 21 19
26 26 H 1.48496 * 109.46862 * 330.00105 * 23 21 19
27 27 C 1.38704 * 120.03296 * 33.34129 * 13 12 10
28 28 C 1.47432 * 108.69999 * 359.16488 * 9 8 7
29 29 H 1.09005 * 109.47015 * 179.97438 * 1 2 3
30 30 H 1.08997 * 109.47251 * 299.99842 * 1 2 3
31 31 H 1.09004 * 109.46924 * 59.99974 * 1 2 3
32 32 H 0.96693 * 113.99788 * 300.00268 * 4 2 1
33 33 H 1.08996 * 110.71927 * 35.25087 * 7 5 2
34 34 H 1.08991 * 110.71650 * 271.97632 * 7 5 2
35 35 H 1.08996 * 109.88602 * 218.39091 * 8 7 5
36 36 H 1.09005 * 110.01136 * 97.29523 * 8 7 5
37 37 H 0.96999 * 120.00248 * 5.41389 * 12 10 9
38 38 H 1.08003 * 119.96702 * 0.02562 * 14 13 12
39 39 H 1.08000 * 119.92886 * 180.02562 * 15 14 13
40 40 H 1.08004 * 119.96044 * 180.02562 * 16 15 14
41 41 H 0.96999 * 120.00089 * 179.97438 * 22 21 19
42 42 H 1.08000 * 120.07171 * 0.02562 * 27 13 12
43 43 H 1.08999 * 110.36306 * 142.74276 * 28 9 8
44 44 H 1.09003 * 110.36350 * 265.06621 * 28 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 8 2.0064 -0.6737 1.1668
5 6 2.0400 -0.7211 -1.2493
6 1 1.6343 -0.2667 -2.1532
7 6 3.5911 -0.7424 -1.2849
8 6 3.9003 -1.9993 -2.1253
9 7 2.7204 -2.8735 -2.0537
10 6 2.5850 -4.0626 -2.6733
11 8 1.5596 -4.7030 -2.5428
12 7 3.5862 -4.5420 -3.4377
13 6 3.4041 -5.7198 -4.1713
14 6 4.4731 -6.5834 -4.3769
15 6 4.2940 -7.7467 -5.1006
16 6 3.0521 -8.0551 -5.6216
17 6 1.9781 -7.1989 -5.4143
18 8 0.7569 -7.5056 -5.9217
19 6 0.6229 -8.7126 -6.5075
20 1 1.4389 -9.4196 -6.4803
21 6 -0.5624 -9.0462 -7.1447
22 7 -0.6934 -10.2241 -7.7159
23 14 -1.9737 -7.8232 -7.1923
24 1 -1.8512 -6.9730 -8.4036
25 1 -3.2639 -8.5574 -7.2312
26 1 -1.9276 -6.9670 -5.9799
27 6 2.1563 -6.0264 -4.6936
28 6 1.7073 -2.2309 -1.1967
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 1.7210 -0.2702 1.9979
33 1 3.9986 -0.8414 -0.2788
34 1 3.9779 0.1523 -1.7725
35 1 4.7689 -2.5147 -1.7156
36 1 4.0908 -1.7179 -3.1610
37 1 4.4329 -4.0708 -3.4793
38 1 5.4448 -6.3456 -3.9698
39 1 5.1263 -8.4165 -5.2586
40 1 2.9151 -8.9654 -6.1865
41 1 -1.5228 -10.4576 -8.1613
42 1 1.3239 -5.3568 -4.5353
43 1 0.7071 -2.4134 -1.5897
44 1 1.7870 -2.5992 -0.1738
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000752499188.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:39:55
Heat of formation + Delta-G solvation = -96.646265 kcal
Electronic energy + Delta-G solvation = -26583.642294 eV
Core-core repulsion = 22693.961193 eV
Total energy + Delta-G solvation = -3889.681101 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.157 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-41.89501 -40.76899 -39.70531 -38.33795 -37.30205 -35.60911 -34.45355 -33.34288
-31.48599 -31.15205 -30.15130 -28.95567 -27.24418 -25.68875 -23.84535 -23.20070
-22.90341 -21.25480 -20.98851 -19.88683 -19.64710 -18.94219 -18.26623 -17.32279
-17.13066 -16.88436 -16.63604 -15.95655 -15.94003 -15.60214 -15.50699 -15.40441
-14.98627 -14.52598 -14.41161 -14.30945 -14.24455 -13.98458 -13.68616 -13.51583
-13.32790 -13.04076 -12.95923 -12.76490 -12.63546 -12.50580 -12.11104 -12.05931
-11.66537 -11.60540 -11.48757 -11.40833 -11.09196 -10.88859 -10.81771 -9.78537
-9.36725 -8.90013 -8.52320 -6.23955 0.41118 0.63765 1.25767 1.29605
1.38886 1.48500 1.96694 2.26013 2.74494 2.76810 3.10095 3.16528
3.31739 3.47964 3.71621 3.87999 4.09872 4.20996 4.28363 4.31743
4.34289 4.38601 4.41328 4.51337 4.60151 4.63692 4.68667 4.83472
4.84752 4.94608 4.97320 4.99856 5.07448 5.18007 5.31717 5.34784
5.36842 5.41983 5.43307 5.66776 5.76997 5.89179 5.96119 6.21406
6.79581 6.82720 6.96986 7.38478 7.59181 8.59321
Molecular weight = 320.16amu
Principal moments of inertia in cm(-1)
A = 0.016020 B = 0.002940 C = 0.002554
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1747.379161 B = 9522.393714 C =10961.450456
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C 0.119 3.881
3 H 0.087 0.913
4 O -0.582 6.582
5 C -0.094 4.094
6 H 0.103 0.897
7 C -0.110 4.110
8 C 0.087 3.913
9 N -0.632 5.632
10 C 0.709 3.291
11 O -0.620 6.620
12 N -0.662 5.662
13 C 0.202 3.798
14 C -0.196 4.196
15 C -0.048 4.048
16 C -0.249 4.249
17 C 0.137 3.863
18 O -0.250 6.250
19 C -0.397 4.397
20 H 0.088 0.912
21 C 0.015 3.985
22 N -0.919 5.919
23 Si 0.963 3.037
24 H -0.262 1.262
25 H -0.261 1.261
26 H -0.277 1.277
27 C -0.205 4.205
28 C 0.130 3.870
29 H 0.043 0.957
30 H 0.075 0.925
31 H 0.071 0.929
32 H 0.394 0.606
33 H 0.086 0.914
34 H 0.110 0.890
35 H 0.083 0.917
36 H 0.083 0.917
37 H 0.425 0.575
38 H 0.165 0.835
39 H 0.159 0.841
40 H 0.116 0.884
41 H 0.285 0.715
42 H 0.104 0.896
43 H 0.049 0.951
44 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.895 26.769 15.954 33.726
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.248 4.248
2 C 0.060 3.940
3 H 0.105 0.895
4 O -0.391 6.391
5 C -0.113 4.113
6 H 0.122 0.878
7 C -0.148 4.148
8 C -0.035 4.035
9 N -0.369 5.369
10 C 0.411 3.589
11 O -0.499 6.499
12 N -0.312 5.312
13 C 0.107 3.893
14 C -0.217 4.217
15 C -0.066 4.066
16 C -0.269 4.269
17 C 0.087 3.913
18 O -0.157 6.157
19 C -0.473 4.473
20 H 0.105 0.895
21 C -0.184 4.184
22 N -0.560 5.560
23 Si 0.786 3.214
24 H -0.187 1.187
25 H -0.185 1.185
26 H -0.202 1.202
27 C -0.227 4.227
28 C 0.007 3.993
29 H 0.062 0.938
30 H 0.093 0.907
31 H 0.090 0.910
32 H 0.245 0.755
33 H 0.105 0.895
34 H 0.129 0.871
35 H 0.101 0.899
36 H 0.102 0.898
37 H 0.265 0.735
38 H 0.183 0.817
39 H 0.177 0.823
40 H 0.134 0.866
41 H 0.095 0.905
42 H 0.122 0.878
43 H 0.068 0.932
44 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 12.086 25.920 15.483 32.521
hybrid contribution -1.075 0.090 0.038 1.079
sum 11.011 26.009 15.521 32.228
Atomic orbital electron populations
1.22560 0.96496 1.02139 1.03617 1.21574 0.92496 0.95464 0.84459
0.89502 1.86486 1.77120 1.58557 1.16928 1.22492 0.97441 0.92672
0.98671 0.87843 1.22626 0.93962 0.97002 1.01194 1.22410 0.87423
0.91550 1.02082 1.47643 1.20419 1.17813 1.51055 1.15716 0.83282
0.81017 0.78891 1.90989 1.30942 1.59943 1.68047 1.42249 1.16896
1.25372 1.46652 1.17074 0.93217 0.87001 0.92038 1.20874 0.99088
0.94877 1.06822 1.21021 0.95631 0.96130 0.93862 1.21352 0.94155
1.02460 1.08912 1.19327 0.85088 0.94011 0.92860 1.83540 1.28564
1.35746 1.67890 1.20763 1.03268 0.89335 1.33972 0.89483 1.25166
1.00122 0.98361 0.94761 1.69710 1.28790 1.21328 1.36153 0.85341
0.78171 0.78749 0.79185 1.18655 1.18546 1.20226 1.20052 0.98814
0.98643 1.05156 1.22075 0.90746 0.92920 0.93588 0.93780 0.90653
0.90987 0.75546 0.89524 0.87121 0.89922 0.89826 0.73526 0.81719
0.82329 0.86638 0.90496 0.87764 0.93238 0.91619
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -1.92 9.40 71.98 0.68 -1.24 16
2 C 0.12 1.08 3.40 30.59 0.10 1.19 16
3 H 0.09 0.39 8.14 -2.39 -0.02 0.38 16
4 O -0.58 -6.43 11.45 -148.98 -1.71 -8.13 16
5 C -0.09 -1.18 2.90 -9.47 -0.03 -1.21 16
6 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16
7 C -0.11 -1.00 6.37 31.78 0.20 -0.80 16
8 C 0.09 1.13 6.16 86.73 0.53 1.67 16
9 N -0.63 -15.24 3.33 -830.17 -2.76 -18.01 16
10 C 0.71 23.90 8.22 179.06 1.47 25.37 16
11 O -0.62 -28.41 14.29 -3.99 -0.06 -28.47 16
12 N -0.66 -18.90 5.30 -317.24 -1.68 -20.58 16
13 C 0.20 7.34 6.28 38.13 0.24 7.58 16
14 C -0.20 -5.92 9.96 22.42 0.22 -5.69 16
15 C -0.05 -1.64 10.03 22.23 0.22 -1.41 16
16 C -0.25 -11.42 9.13 22.41 0.20 -11.22 16
17 C 0.14 7.17 6.64 22.56 0.15 7.32 16
18 O -0.25 -15.06 8.58 -22.73 -0.20 -15.26 16
19 C -0.40 -24.83 9.90 67.92 0.67 -24.15 16
20 H 0.09 5.57 5.53 -2.91 -0.02 5.55 16
21 C 0.01 0.89 5.49 84.83 0.47 1.35 16
22 N -0.92 -56.76 13.96 21.61 0.30 -56.46 16
23 Si 0.96 48.98 28.62 68.60 1.96 50.94 16
24 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16
25 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16
26 H -0.28 -14.82 7.11 99.48 0.71 -14.11 16
27 C -0.20 -9.70 8.60 22.51 0.19 -9.50 16
28 C 0.13 2.93 5.57 86.78 0.48 3.41 16
29 H 0.04 0.67 7.52 -2.38 -0.02 0.65 16
30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16
31 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16
32 H 0.39 1.26 9.08 -74.06 -0.67 0.59 16
33 H 0.09 0.87 7.42 -2.39 -0.02 0.85 16
34 H 0.11 0.42 8.14 -2.39 -0.02 0.41 16
35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16
36 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16
37 H 0.43 7.85 7.82 -92.71 -0.72 7.13 16
38 H 0.17 3.31 8.06 -2.91 -0.02 3.29 16
39 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16
40 H 0.12 5.68 5.71 -2.91 -0.02 5.66 16
41 H 0.29 16.13 8.31 -92.71 -0.77 15.36 16
42 H 0.10 5.43 6.42 -2.91 -0.02 5.41 16
43 H 0.05 1.36 7.98 -2.39 -0.02 1.34 16
44 H 0.07 1.64 7.11 -2.39 -0.02 1.63 16
Total: -1.00 -85.94 360.90 1.33 -84.61
By element:
Atomic # 1 Polarization: 19.05 SS G_CDS: -0.35 Total: 18.69 kcal
Atomic # 6 Polarization: -13.16 SS G_CDS: 5.82 Total: -7.34 kcal
Atomic # 7 Polarization: -90.91 SS G_CDS: -4.14 Total: -95.05 kcal
Atomic # 8 Polarization: -49.90 SS G_CDS: -1.96 Total: -51.86 kcal
Atomic # 14 Polarization: 48.98 SS G_CDS: 1.96 Total: 50.94 kcal
Total: -85.94 1.33 -84.61 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000752499188.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.037 kcal
(2) G-P(sol) polarization free energy of solvation -85.939 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.975 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.610 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.646 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds