Wall clock time and date at job start Tue Mar 31 2020 12:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.98530 * 2 1 4 4 O 1.43745 * 109.87880 * 121.08435 * 2 1 3 5 5 C 1.44381 * 106.97477 * 145.93879 * 4 2 1 6 6 C 1.54997 * 103.48785 * 319.93886 * 5 4 2 7 7 C 1.54095 * 109.87815 * 238.91673 * 2 1 3 8 8 C 1.53001 * 110.60395 * 357.27827 * 7 2 1 9 9 N 1.46505 * 110.48723 * 119.86967 * 7 2 1 10 10 C 1.34777 * 119.99924 * 176.21978 * 9 7 2 11 11 O 1.21591 * 120.00189 * 0.02562 * 10 9 7 12 12 N 1.34776 * 120.00159 * 180.02562 * 10 9 7 13 13 C 1.39939 * 120.00333 * 175.27751 * 12 10 9 14 14 C 1.38968 * 120.03218 * 35.77806 * 13 12 10 15 15 C 1.38159 * 120.06349 * 179.97438 * 14 13 12 16 16 C 1.38167 * 120.13834 * 0.26840 * 15 14 13 17 17 C 1.38910 * 120.07149 * 359.45814 * 16 15 14 18 18 O 1.35749 * 120.03406 * 180.26698 * 17 16 15 19 19 C 1.34835 * 116.99979 * 186.11476 * 18 17 16 20 20 H 1.08001 * 119.99817 * 5.27501 * 19 18 17 21 21 C 1.38651 * 120.00108 * 185.28377 * 19 18 17 22 22 N 1.31559 * 119.99972 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00040 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47336 * 90.00296 * 23 21 19 25 25 H 1.48501 * 109.47226 * 210.00296 * 23 21 19 26 26 H 1.48504 * 109.47119 * 330.00469 * 23 21 19 27 27 C 1.38709 * 120.03718 * 215.75934 * 13 12 10 28 28 H 1.09004 * 109.47340 * 181.08440 * 1 2 3 29 29 H 1.08996 * 109.47545 * 301.08456 * 1 2 3 30 30 H 1.09001 * 109.47494 * 61.08717 * 1 2 3 31 31 H 1.08997 * 110.61517 * 201.44167 * 5 4 2 32 32 H 1.08998 * 110.75292 * 78.50316 * 5 4 2 33 33 H 1.09002 * 110.90731 * 278.82230 * 6 5 4 34 34 H 1.08995 * 110.93628 * 155.23628 * 6 5 4 35 35 H 1.08991 * 109.47261 * 181.92470 * 8 7 2 36 36 H 1.08999 * 109.46992 * 301.92220 * 8 7 2 37 37 H 1.09003 * 109.47216 * 61.91969 * 8 7 2 38 38 H 0.96998 * 119.99671 * 356.21682 * 9 7 2 39 39 H 0.96995 * 119.99447 * 355.27506 * 12 10 9 40 40 H 1.07990 * 119.96808 * 0.02562 * 14 13 12 41 41 H 1.07998 * 119.93164 * 180.02562 * 15 14 13 42 42 H 1.08000 * 119.96322 * 179.70216 * 16 15 14 43 43 H 0.97002 * 120.00317 * 179.97438 * 22 21 19 44 44 H 1.07990 * 120.06267 * 0.03908 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9025 1.0244 0.0000 4 8 2.0188 -0.6979 1.1577 5 6 3.2379 -1.3641 0.7647 6 6 2.9195 -1.8914 -0.6576 7 6 2.0540 -0.7482 -1.2411 8 6 0.8917 -1.3189 -2.0562 9 7 2.8711 0.1421 -2.0694 10 6 3.4897 -0.3376 -3.1665 11 8 3.3693 -1.5091 -3.4691 12 7 4.2419 0.4812 -3.9283 13 6 4.9635 -0.0362 -5.0099 14 6 4.4327 -1.0729 -5.7681 15 6 5.1444 -1.5838 -6.8364 16 6 6.3878 -1.0699 -7.1510 17 6 6.9213 -0.0299 -6.4005 18 8 8.1406 0.4781 -6.7136 19 6 8.6555 1.3970 -5.8718 20 1 8.1417 1.6346 -4.9521 21 6 9.8444 2.0369 -6.1871 22 7 10.3465 2.9338 -5.3660 23 14 10.7333 1.6255 -7.7777 24 1 10.2526 2.5220 -8.8596 25 1 12.1945 1.8140 -7.5912 26 1 10.4595 0.2133 -8.1468 27 6 6.2092 0.4854 -5.3266 28 1 -0.3634 -1.0275 0.0194 29 1 -0.3634 0.5306 0.8800 30 1 -0.3634 0.4968 -0.8996 31 1 3.4584 -2.1907 1.4401 32 1 4.0703 -0.6610 0.7360 33 1 2.3540 -2.8220 -0.6099 34 1 3.8328 -2.0228 -1.2378 35 1 1.2836 -1.8724 -2.9094 36 1 0.3022 -1.9877 -1.4291 37 1 0.2614 -0.5033 -2.4105 38 1 2.9668 1.0767 -1.8283 39 1 4.2829 1.4291 -3.7269 40 1 3.4627 -1.4789 -5.5225 41 1 4.7297 -2.3891 -7.4244 42 1 6.9437 -1.4747 -7.9837 43 1 11.1785 3.3813 -5.5863 44 1 6.6238 1.2908 -4.7387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752501880.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:28 Heat of formation + Delta-G solvation = -60.836497 kcal Electronic energy + Delta-G solvation = -27014.567609 eV Core-core repulsion = 23126.439336 eV Total energy + Delta-G solvation = -3888.128273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.10368 -39.76831 -38.75637 -36.74088 -35.10603 -34.30155 -32.49017 -32.30113 -31.33117 -29.37007 -28.58169 -27.73844 -25.41543 -25.14292 -23.06083 -22.19165 -21.75822 -20.39213 -19.82662 -18.53527 -17.90053 -17.67579 -16.97034 -16.15192 -15.77974 -15.49758 -15.31061 -14.98773 -14.84519 -14.33618 -14.24462 -14.00158 -13.88199 -13.60532 -13.11775 -13.02676 -12.99092 -12.61533 -12.31042 -12.20292 -11.94990 -11.87550 -11.66369 -11.46302 -11.27308 -11.20823 -10.99558 -10.91644 -10.75515 -10.28282 -9.99393 -9.93991 -9.59772 -9.51096 -9.27041 -8.86096 -7.80283 -7.29000 -6.43838 -4.10974 1.96264 2.29302 2.55846 3.20049 3.22820 3.25391 3.40032 3.51470 4.12243 4.13738 4.22691 4.40614 4.50857 4.52559 4.75985 4.88331 4.92594 4.98198 5.06590 5.22780 5.25553 5.42967 5.48998 5.55246 5.59361 5.62546 5.73837 5.78733 5.89480 5.92356 6.00689 6.11042 6.17587 6.21327 6.31643 6.43900 6.59987 6.72256 6.90944 7.15201 7.21160 7.25091 7.60889 7.76291 7.96581 8.02112 8.58382 8.91906 9.54666 10.63966 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020728 B = 0.002809 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.537334 B = 9966.469524 C =10791.175827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.075 3.925 3 H 0.072 0.928 4 O -0.370 6.370 5 C 0.044 3.956 6 C -0.156 4.156 7 C 0.166 3.834 8 C -0.158 4.158 9 N -0.738 5.738 10 C 0.707 3.293 11 O -0.565 6.565 12 N -0.682 5.682 13 C 0.195 3.805 14 C -0.195 4.195 15 C -0.066 4.066 16 C -0.201 4.201 17 C 0.173 3.827 18 O -0.217 6.217 19 C -0.389 4.389 20 H 0.104 0.896 21 C 0.063 3.937 22 N -0.881 5.881 23 Si 0.905 3.095 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.245 4.245 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.396 0.604 39 H 0.403 0.597 40 H 0.127 0.873 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.279 0.721 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.283 -4.873 8.959 20.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.016 3.984 3 H 0.089 0.911 4 O -0.289 6.289 5 C -0.033 4.033 6 C -0.195 4.195 7 C 0.079 3.921 8 C -0.216 4.216 9 N -0.395 5.395 10 C 0.407 3.593 11 O -0.442 6.442 12 N -0.329 5.329 13 C 0.101 3.899 14 C -0.216 4.216 15 C -0.085 4.085 16 C -0.221 4.221 17 C 0.121 3.879 18 O -0.122 6.122 19 C -0.465 4.465 20 H 0.121 0.879 21 C -0.140 4.140 22 N -0.519 5.519 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.183 1.183 27 C -0.267 4.267 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.230 0.770 39 H 0.238 0.762 40 H 0.145 0.855 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.089 0.911 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.171 -5.840 8.810 21.022 hybrid contribution 0.805 1.119 -0.385 1.431 sum -17.366 -4.721 8.424 19.871 Atomic orbital electron populations 1.22027 0.92832 1.03393 1.02527 1.22904 0.95715 0.95543 0.84228 0.91053 1.88912 1.39962 1.67723 1.32345 1.23618 0.87387 0.96560 0.95699 1.23517 1.01888 0.98266 0.95802 1.21422 0.90827 0.89795 0.90014 1.22287 0.96491 1.01443 1.01381 1.45287 1.53871 1.13058 1.27292 1.15845 0.78653 0.85140 0.79616 1.90905 1.65653 1.15174 1.72429 1.42583 1.48899 1.11005 1.30399 1.17195 0.90092 0.95875 0.86713 1.20760 1.02105 1.01213 0.97520 1.20552 0.93565 0.98302 0.96109 1.20251 0.97896 1.00124 1.03812 1.18790 0.84962 0.91914 0.92249 1.83615 1.27240 1.52759 1.48555 1.20713 1.07145 1.16842 1.01757 0.87868 1.24457 0.96045 0.94596 0.98886 1.69644 1.20908 1.24682 1.36710 0.86179 0.78170 0.80309 0.82255 1.19913 1.20817 1.18269 1.20922 0.94460 1.07497 1.03780 0.91163 0.91811 0.90783 0.88690 0.92000 0.89598 0.88697 0.89942 0.91295 0.92160 0.76977 0.76201 0.85537 0.86511 0.86450 0.91079 0.84744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.41 37.16 0.31 -0.73 16 2 C 0.07 0.64 3.86 -26.16 -0.10 0.54 16 3 H 0.07 0.55 7.48 -51.93 -0.39 0.16 16 4 O -0.37 -3.87 11.19 -35.23 -0.39 -4.27 16 5 C 0.04 0.42 7.72 38.21 0.29 0.71 16 6 C -0.16 -1.66 5.90 -24.72 -0.15 -1.81 16 7 C 0.17 1.62 0.95 -130.29 -0.12 1.50 16 8 C -0.16 -1.50 7.22 37.16 0.27 -1.24 16 9 N -0.74 -7.57 5.16 -50.99 -0.26 -7.83 16 10 C 0.71 9.98 7.61 -86.92 -0.66 9.31 16 11 O -0.57 -9.61 10.74 5.29 0.06 -9.56 16 12 N -0.68 -9.95 5.34 -14.24 -0.08 -10.02 16 13 C 0.20 3.59 6.28 -83.71 -0.53 3.07 16 14 C -0.20 -3.56 8.69 -39.34 -0.34 -3.90 16 15 C -0.07 -1.18 10.03 -39.64 -0.40 -1.57 16 16 C -0.20 -4.00 9.99 -39.36 -0.39 -4.40 16 17 C 0.17 3.97 6.64 -39.13 -0.26 3.71 16 18 O -0.22 -5.64 8.58 0.04 0.00 -5.64 16 19 C -0.39 -10.78 9.90 30.88 0.31 -10.47 16 20 H 0.10 2.91 5.52 -52.49 -0.29 2.62 16 21 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 22 N -0.88 -25.10 13.96 55.48 0.77 -24.33 16 23 Si 0.91 21.47 28.62 -169.99 -4.86 16.60 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 27 C -0.24 -5.16 9.05 -39.21 -0.35 -5.52 16 28 H 0.07 0.49 6.67 -51.93 -0.35 0.14 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.43 6.89 -51.93 -0.36 0.07 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.87 7.87 -51.93 -0.41 0.46 16 34 H 0.09 1.25 6.64 -51.93 -0.34 0.90 16 35 H 0.08 1.01 6.31 -51.93 -0.33 0.68 16 36 H 0.07 0.56 6.72 -51.93 -0.35 0.21 16 37 H 0.06 0.51 6.85 -51.93 -0.36 0.15 16 38 H 0.40 3.06 8.13 -40.82 -0.33 2.73 16 39 H 0.40 4.72 8.84 -40.82 -0.36 4.36 16 40 H 0.13 2.28 6.27 -52.49 -0.33 1.95 16 41 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 43 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.13 2.93 5.71 -52.49 -0.30 2.63 16 LS Contribution 351.42 15.07 5.30 5.30 Total: -1.00 -31.63 351.42 -7.43 -39.06 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -5.74 Total: 9.83 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -2.22 Total: -9.14 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.44 Total: -42.18 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.34 Total: -19.47 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.86 Total: 16.60 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.63 -7.43 -39.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752501880.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.778 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds