Wall clock time and date at job start Tue Mar 31 2020 13:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.43670 * 2 1 4 4 C 1.47686 * 109.44056 * 119.91803 * 2 1 3 5 5 O 1.42561 * 113.66447 * 180.86780 * 4 2 1 6 6 C 1.40528 * 113.54009 * 272.23672 * 5 4 2 7 7 C 1.54301 * 109.86362 * 95.29013 * 6 5 4 8 8 N 1.48179 * 110.69472 * 320.61489 * 7 6 5 9 9 C 1.34771 * 118.51198 * 138.77348 * 8 7 6 10 10 O 1.21584 * 119.99966 * 175.28550 * 9 8 7 11 11 N 1.34779 * 120.00340 * 355.28958 * 9 8 7 12 12 C 1.39942 * 119.99881 * 184.74855 * 11 9 8 13 13 C 1.38957 * 120.03144 * 144.28659 * 12 11 9 14 14 C 1.38162 * 120.06824 * 179.97438 * 13 12 11 15 15 C 1.38168 * 120.13451 * 359.97438 * 14 13 12 16 16 C 1.38914 * 120.07254 * 0.02562 * 15 14 13 17 17 O 1.35751 * 120.03441 * 180.02562 * 16 15 14 18 18 C 1.34825 * 117.00059 * 354.44275 * 17 16 15 19 19 H 1.08001 * 120.00497 * 5.09864 * 18 17 16 20 20 C 1.38655 * 120.00109 * 185.09737 * 18 17 16 21 21 N 1.31557 * 119.99618 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00231 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46968 * 90.00019 * 22 20 18 24 24 H 1.48498 * 109.46876 * 209.99859 * 22 20 18 25 25 H 1.48496 * 109.46862 * 330.00165 * 22 20 18 26 26 C 1.38698 * 120.03728 * 324.00533 * 12 11 9 27 27 C 1.44474 * 122.93163 * 318.76974 * 8 7 6 28 28 H 1.09001 * 109.47029 * 299.99905 * 1 2 3 29 29 H 1.08992 * 109.47317 * 59.99744 * 1 2 3 30 30 H 1.08995 * 109.47329 * 180.02562 * 1 2 3 31 31 H 1.09008 * 108.63828 * 301.94471 * 4 2 1 32 32 H 1.09001 * 108.64498 * 59.91684 * 4 2 1 33 33 H 1.09001 * 109.40406 * 215.40775 * 6 5 4 34 34 H 1.08999 * 109.40592 * 335.16819 * 6 5 4 35 35 H 1.09007 * 109.22607 * 80.92635 * 7 6 5 36 36 H 1.08998 * 109.22939 * 200.29782 * 7 6 5 37 37 H 0.96998 * 119.99459 * 4.74238 * 11 9 8 38 38 H 1.07995 * 119.97054 * 359.97438 * 13 12 11 39 39 H 1.08000 * 119.93741 * 179.97438 * 14 13 12 40 40 H 1.07998 * 119.96768 * 180.02562 * 15 14 13 41 41 H 0.97003 * 120.00055 * 179.97438 * 21 20 18 42 42 H 1.07999 * 120.06863 * 0.02821 * 26 12 11 43 43 H 1.09009 * 109.53542 * 329.01974 * 27 8 7 44 44 H 1.08998 * 109.46443 * 208.93331 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8927 1.0279 0.0000 4 6 2.0215 -0.6946 1.2071 5 8 3.4431 -0.7299 1.3080 6 6 4.0249 -1.8309 0.6568 7 6 4.4688 -1.4251 -0.7642 8 7 3.4704 -0.5249 -1.3876 9 6 3.9121 0.5306 -2.0998 10 8 3.1207 1.2371 -2.6939 11 7 5.2310 0.8029 -2.1538 12 6 5.6815 1.9540 -2.8098 13 6 6.7774 2.6517 -2.3167 14 6 7.2231 3.7879 -2.9641 15 6 6.5815 4.2338 -4.1036 16 6 5.4854 3.5408 -4.6016 17 8 4.8558 3.9793 -5.7215 18 6 5.2703 5.1544 -6.2363 19 1 6.1227 5.6610 -5.8082 20 6 4.6023 5.7127 -7.3155 21 7 3.5643 5.0954 -7.8374 22 14 5.1770 7.3404 -8.0293 23 1 6.1770 7.0870 -9.0974 24 1 4.0154 8.0677 -8.6011 25 1 5.7953 8.1604 -6.9567 26 6 5.0382 2.3965 -3.9562 27 6 2.0453 -0.7283 -1.2660 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.6221 -0.1895 2.0866 32 1 1.6493 -1.7190 1.1955 33 1 4.8916 -2.1705 1.2238 34 1 3.2967 -2.6394 0.5917 35 1 5.4289 -0.9121 -0.7075 36 1 4.5765 -2.3206 -1.3761 37 1 5.8678 0.2011 -1.7377 38 1 7.2812 2.3054 -1.4264 39 1 8.0748 4.3287 -2.5787 40 1 6.9324 5.1221 -4.6077 41 1 3.0967 5.4861 -8.5921 42 1 4.1888 1.8536 -4.3437 43 1 1.8351 -1.7947 -1.1831 44 1 1.5445 -0.3259 -2.1465 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754412199.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:40 Heat of formation + Delta-G solvation = -51.567671 kcal Electronic energy + Delta-G solvation = -27213.155183 eV Core-core repulsion = 23325.428837 eV Total energy + Delta-G solvation = -3887.726346 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.89553 -39.38724 -38.47762 -36.62999 -35.39741 -34.95950 -33.76070 -32.17087 -29.75844 -29.37727 -28.49737 -26.56955 -26.21915 -25.17986 -23.13235 -22.05369 -21.47120 -20.86435 -19.58423 -18.57708 -18.07996 -17.20789 -16.87234 -16.35668 -15.99633 -15.50852 -15.13021 -14.96944 -14.57810 -14.43203 -14.19788 -14.01270 -13.75074 -13.53803 -13.42305 -13.12754 -12.74179 -12.41283 -12.31692 -12.20485 -11.94454 -11.66441 -11.56538 -11.40586 -11.23442 -11.06443 -10.94697 -10.85469 -10.70751 -10.41201 -10.05823 -9.74274 -9.60396 -9.15125 -8.75620 -8.69829 -7.58014 -7.09755 -6.35217 -3.94253 2.17760 2.43331 2.61848 3.18138 3.19261 3.24412 3.37883 3.48954 3.83565 4.05861 4.38256 4.43642 4.62920 4.67397 4.72797 4.91937 4.99641 5.06257 5.18354 5.19641 5.20156 5.28375 5.39457 5.40587 5.49461 5.65423 5.70250 5.80814 5.92110 5.95954 6.04841 6.17426 6.31282 6.39913 6.52419 6.66221 6.91419 6.95081 7.09846 7.13940 7.24709 7.42595 7.57053 7.90550 8.01661 8.10099 8.74295 9.09749 9.82391 10.82888 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019777 B = 0.002979 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.458450 B = 9396.009472 C =10295.891606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.145 4.145 3 H 0.085 0.915 4 C 0.069 3.931 5 O -0.365 6.365 6 C 0.050 3.950 7 C 0.079 3.921 8 N -0.621 5.621 9 C 0.700 3.300 10 O -0.557 6.557 11 N -0.682 5.682 12 C 0.192 3.808 13 C -0.236 4.236 14 C -0.059 4.059 15 C -0.247 4.247 16 C 0.167 3.833 17 O -0.175 6.175 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.862 5.862 22 Si 0.941 3.059 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.185 4.185 27 C 0.137 3.863 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.399 0.601 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.127 0.873 41 H 0.269 0.731 42 H 0.134 0.866 43 H 0.071 0.929 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.183 -15.551 17.838 23.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.166 4.166 3 H 0.104 0.896 4 C -0.008 4.008 5 O -0.282 6.282 6 C -0.029 4.029 7 C -0.045 4.045 8 N -0.359 5.359 9 C 0.401 3.599 10 O -0.431 6.431 11 N -0.331 5.331 12 C 0.098 3.902 13 C -0.257 4.257 14 C -0.078 4.078 15 C -0.267 4.267 16 C 0.113 3.887 17 O -0.078 6.078 18 C -0.467 4.467 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.497 5.497 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.207 4.207 27 C 0.013 3.987 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.237 0.763 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.145 0.855 41 H 0.079 0.921 42 H 0.152 0.848 43 H 0.089 0.911 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.703 -15.001 17.196 22.830 hybrid contribution 0.588 0.318 -0.184 0.693 sum -0.116 -14.683 17.011 22.472 Atomic orbital electron populations 1.21658 0.93440 1.01901 1.02845 1.21587 0.96710 1.02362 0.95893 0.89642 1.21645 0.80829 0.99991 0.98300 1.87511 1.20170 1.46986 1.73572 1.22871 0.99124 0.88937 0.91936 1.22753 0.92293 0.94615 0.94802 1.46867 1.06307 1.28036 1.54675 1.15962 0.82707 0.81238 0.79952 1.91011 1.54315 1.49930 1.47880 1.42712 1.06079 1.25683 1.58645 1.16973 0.95112 0.86849 0.91274 1.20245 1.02282 0.99867 1.03352 1.20476 0.97995 0.94781 0.94510 1.21166 1.00337 1.04464 1.00701 1.19139 0.90549 0.92289 0.86752 1.83991 1.54072 1.36523 1.33217 1.21340 1.14594 0.96472 1.14313 0.89037 1.25293 0.95571 0.99423 0.96306 1.70061 1.18369 1.38380 1.22859 0.85716 0.78250 0.80221 0.79242 1.19949 1.20317 1.19201 1.20172 1.04580 0.99797 0.96133 1.21354 0.79372 0.99325 0.98697 0.92248 0.91475 0.92586 0.89811 0.93277 0.88583 0.92384 0.90043 0.90752 0.76297 0.87533 0.87094 0.85520 0.92111 0.84835 0.91108 0.88713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.15 37.16 0.34 -0.82 16 2 C -0.15 -1.50 2.88 -92.20 -0.27 -1.77 16 3 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 4 C 0.07 0.59 5.26 34.59 0.18 0.77 16 5 O -0.36 -3.71 10.23 -34.10 -0.35 -4.05 16 6 C 0.05 0.34 6.49 37.84 0.25 0.59 16 7 C 0.08 0.65 6.51 -2.44 -0.02 0.64 16 8 N -0.62 -7.74 2.55 -177.64 -0.45 -8.19 16 9 C 0.70 12.02 8.06 -86.92 -0.70 11.32 16 10 O -0.56 -12.26 13.20 5.29 0.07 -12.19 16 11 N -0.68 -10.93 5.21 -14.24 -0.07 -11.00 16 12 C 0.19 3.81 6.28 -83.72 -0.53 3.29 16 13 C -0.24 -4.27 9.97 -39.34 -0.39 -4.66 16 14 C -0.06 -1.12 10.03 -39.63 -0.40 -1.51 16 15 C -0.25 -5.63 9.17 -39.36 -0.36 -5.99 16 16 C 0.17 4.36 6.64 -39.13 -0.26 4.10 16 17 O -0.17 -5.32 9.76 0.06 0.00 -5.32 16 18 C -0.39 -11.40 9.49 30.89 0.29 -11.11 16 19 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 20 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -26.33 13.67 55.48 0.76 -25.57 16 22 Si 0.94 21.21 29.55 -169.99 -5.02 16.19 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 C -0.19 -4.47 8.63 -39.21 -0.34 -4.81 16 27 C 0.14 1.52 4.78 -4.13 -0.02 1.51 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.67 8.14 -51.92 -0.42 0.24 16 32 H 0.05 0.32 7.27 -51.93 -0.38 -0.05 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.31 7.20 -51.93 -0.37 -0.06 16 35 H 0.08 0.63 5.59 -51.93 -0.29 0.33 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.40 4.78 6.18 -40.82 -0.25 4.53 16 38 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.13 2.85 5.63 -52.49 -0.30 2.56 16 41 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 42 H 0.13 3.48 6.28 -52.49 -0.33 3.15 16 43 H 0.07 0.59 8.10 -51.92 -0.42 0.17 16 44 H 0.09 1.28 7.16 -51.93 -0.37 0.91 16 LS Contribution 354.34 15.07 5.34 5.34 Total: -1.00 -36.37 354.34 -7.97 -44.34 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -5.92 Total: 7.93 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -2.31 Total: -7.47 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.23 Total: -44.76 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.28 Total: -21.56 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.37 -7.97 -44.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754412199.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.231 kcal (2) G-P(sol) polarization free energy of solvation -36.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds