Wall clock time and date at job start Tue Mar 31 2020 13:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.43670 * 2 1 4 4 C 1.47686 * 109.44056 * 119.91803 * 2 1 3 5 5 O 1.42561 * 113.66447 * 180.86780 * 4 2 1 6 6 C 1.40528 * 113.54009 * 272.23672 * 5 4 2 7 7 C 1.54301 * 109.86362 * 95.29013 * 6 5 4 8 8 N 1.48179 * 110.69472 * 320.61489 * 7 6 5 9 9 C 1.34771 * 118.51198 * 138.77348 * 8 7 6 10 10 O 1.21584 * 119.99966 * 175.28550 * 9 8 7 11 11 N 1.34779 * 120.00340 * 355.28958 * 9 8 7 12 12 C 1.39942 * 119.99881 * 184.74855 * 11 9 8 13 13 C 1.38957 * 120.03144 * 144.28659 * 12 11 9 14 14 C 1.38162 * 120.06824 * 179.97438 * 13 12 11 15 15 C 1.38168 * 120.13451 * 359.97438 * 14 13 12 16 16 C 1.38914 * 120.07254 * 0.02562 * 15 14 13 17 17 O 1.35751 * 120.03441 * 180.02562 * 16 15 14 18 18 C 1.34825 * 117.00059 * 354.44275 * 17 16 15 19 19 H 1.08001 * 120.00497 * 5.09864 * 18 17 16 20 20 C 1.38655 * 120.00109 * 185.09737 * 18 17 16 21 21 N 1.31557 * 119.99618 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00231 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46968 * 90.00019 * 22 20 18 24 24 H 1.48498 * 109.46876 * 209.99859 * 22 20 18 25 25 H 1.48496 * 109.46862 * 330.00165 * 22 20 18 26 26 C 1.38698 * 120.03728 * 324.00533 * 12 11 9 27 27 C 1.44474 * 122.93163 * 318.76974 * 8 7 6 28 28 H 1.09001 * 109.47029 * 299.99905 * 1 2 3 29 29 H 1.08992 * 109.47317 * 59.99744 * 1 2 3 30 30 H 1.08995 * 109.47329 * 180.02562 * 1 2 3 31 31 H 1.09008 * 108.63828 * 301.94471 * 4 2 1 32 32 H 1.09001 * 108.64498 * 59.91684 * 4 2 1 33 33 H 1.09001 * 109.40406 * 215.40775 * 6 5 4 34 34 H 1.08999 * 109.40592 * 335.16819 * 6 5 4 35 35 H 1.09007 * 109.22607 * 80.92635 * 7 6 5 36 36 H 1.08998 * 109.22939 * 200.29782 * 7 6 5 37 37 H 0.96998 * 119.99459 * 4.74238 * 11 9 8 38 38 H 1.07995 * 119.97054 * 359.97438 * 13 12 11 39 39 H 1.08000 * 119.93741 * 179.97438 * 14 13 12 40 40 H 1.07998 * 119.96768 * 180.02562 * 15 14 13 41 41 H 0.97003 * 120.00055 * 179.97438 * 21 20 18 42 42 H 1.07999 * 120.06863 * 0.02821 * 26 12 11 43 43 H 1.09009 * 109.53542 * 329.01974 * 27 8 7 44 44 H 1.08998 * 109.46443 * 208.93331 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8927 1.0279 0.0000 4 6 2.0215 -0.6946 1.2071 5 8 3.4431 -0.7299 1.3080 6 6 4.0249 -1.8309 0.6568 7 6 4.4688 -1.4251 -0.7642 8 7 3.4704 -0.5249 -1.3876 9 6 3.9121 0.5306 -2.0998 10 8 3.1207 1.2371 -2.6939 11 7 5.2310 0.8029 -2.1538 12 6 5.6815 1.9540 -2.8098 13 6 6.7774 2.6517 -2.3167 14 6 7.2231 3.7879 -2.9641 15 6 6.5815 4.2338 -4.1036 16 6 5.4854 3.5408 -4.6016 17 8 4.8558 3.9793 -5.7215 18 6 5.2703 5.1544 -6.2363 19 1 6.1227 5.6610 -5.8082 20 6 4.6023 5.7127 -7.3155 21 7 3.5643 5.0954 -7.8374 22 14 5.1770 7.3404 -8.0293 23 1 6.1770 7.0870 -9.0974 24 1 4.0154 8.0677 -8.6011 25 1 5.7953 8.1604 -6.9567 26 6 5.0382 2.3965 -3.9562 27 6 2.0453 -0.7283 -1.2660 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.6221 -0.1895 2.0866 32 1 1.6493 -1.7190 1.1955 33 1 4.8916 -2.1705 1.2238 34 1 3.2967 -2.6394 0.5917 35 1 5.4289 -0.9121 -0.7075 36 1 4.5765 -2.3206 -1.3761 37 1 5.8678 0.2011 -1.7377 38 1 7.2812 2.3054 -1.4264 39 1 8.0748 4.3287 -2.5787 40 1 6.9324 5.1221 -4.6077 41 1 3.0967 5.4861 -8.5921 42 1 4.1888 1.8536 -4.3437 43 1 1.8351 -1.7947 -1.1831 44 1 1.5445 -0.3259 -2.1465 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754412199.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:39 Heat of formation + Delta-G solvation = -78.016852 kcal Electronic energy + Delta-G solvation = -27214.302106 eV Core-core repulsion = 23325.428837 eV Total energy + Delta-G solvation = -3888.873269 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.09310 -40.76305 -39.89281 -38.30077 -36.40856 -36.10842 -35.07528 -34.24810 -31.20047 -30.44539 -30.07842 -27.53402 -27.23813 -27.02580 -24.20207 -23.40769 -23.08445 -21.87004 -20.85696 -20.08086 -19.52875 -18.86288 -18.01654 -17.24338 -17.02600 -16.76046 -16.68077 -16.46387 -16.13019 -15.88430 -15.50567 -15.39464 -15.05804 -14.80587 -14.60438 -14.26854 -14.23428 -13.83625 -13.59067 -13.22861 -13.09620 -12.95611 -12.88332 -12.73311 -12.59327 -12.37699 -12.29364 -12.12741 -11.83451 -11.58462 -11.52957 -11.31177 -10.97250 -10.76640 -10.57474 -9.77123 -9.29182 -8.84999 -8.46173 -6.16053 0.47317 0.70843 1.33929 1.44833 1.46127 1.53603 2.00009 2.18582 2.64905 2.83794 3.00875 3.17850 3.53374 3.66724 3.76581 3.89963 4.06960 4.15201 4.17769 4.33263 4.36215 4.39683 4.42173 4.55170 4.59968 4.66813 4.69219 4.74899 4.75639 4.82217 4.86221 4.99725 5.09128 5.12129 5.18934 5.25633 5.36827 5.47900 5.59790 5.65784 5.74406 5.78306 6.03851 6.21922 6.36795 6.77751 6.97179 7.43095 7.80554 8.77889 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019777 B = 0.002979 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.458450 B = 9396.009472 C =10295.891606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 H 0.037 0.963 4 C 0.068 3.932 5 O -0.390 6.390 6 C 0.047 3.953 7 C 0.068 3.932 8 N -0.611 5.611 9 C 0.689 3.311 10 O -0.618 6.618 11 N -0.667 5.667 12 C 0.199 3.801 13 C -0.206 4.206 14 C -0.046 4.046 15 C -0.256 4.256 16 C 0.127 3.873 17 O -0.236 6.236 18 C -0.415 4.415 19 H 0.107 0.893 20 C -0.028 4.028 21 N -0.925 5.925 22 Si 1.025 2.975 23 H -0.260 1.260 24 H -0.273 1.273 25 H -0.250 1.250 26 C -0.213 4.213 27 C 0.130 3.870 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.423 0.577 38 H 0.161 0.839 39 H 0.162 0.838 40 H 0.125 0.875 41 H 0.272 0.728 42 H 0.097 0.903 43 H 0.111 0.889 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.937 -17.077 21.468 27.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 H 0.056 0.944 4 C -0.008 4.008 5 O -0.308 6.308 6 C -0.030 4.030 7 C -0.053 4.053 8 N -0.347 5.347 9 C 0.391 3.609 10 O -0.497 6.497 11 N -0.319 5.319 12 C 0.104 3.896 13 C -0.227 4.227 14 C -0.065 4.065 15 C -0.275 4.275 16 C 0.076 3.924 17 O -0.143 6.143 18 C -0.491 4.491 19 H 0.124 0.876 20 C -0.225 4.225 21 N -0.564 5.564 22 Si 0.843 3.157 23 H -0.185 1.185 24 H -0.198 1.198 25 H -0.173 1.173 26 C -0.234 4.234 27 C 0.006 3.994 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.141 0.859 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.119 0.881 37 H 0.265 0.735 38 H 0.179 0.821 39 H 0.180 0.820 40 H 0.143 0.857 41 H 0.081 0.919 42 H 0.115 0.885 43 H 0.129 0.871 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.105 -16.629 20.930 26.815 hybrid contribution -0.196 0.522 -1.012 1.156 sum 1.909 -16.107 19.918 25.687 Atomic orbital electron populations 1.21636 0.92034 1.03509 1.02263 1.21513 0.97932 0.99760 0.96624 0.94398 1.21677 0.80616 1.01472 0.97015 1.87491 1.20804 1.48561 1.73932 1.23111 1.00684 0.88561 0.90666 1.23192 0.91250 0.94662 0.96230 1.46997 1.07607 1.26763 1.53288 1.16319 0.82531 0.81951 0.80098 1.90991 1.55828 1.52423 1.50431 1.42523 1.06363 1.25052 1.57991 1.17134 0.94914 0.87834 0.89716 1.20851 1.00159 0.98024 1.03638 1.21026 0.98316 0.94782 0.92356 1.21322 0.99680 1.04308 1.02226 1.19663 0.92158 0.93652 0.86892 1.83958 1.56596 1.37875 1.35864 1.21937 1.15398 0.96773 1.14965 0.87563 1.26745 0.95459 1.03920 0.96380 1.70236 1.20750 1.41123 1.24269 0.84512 0.78045 0.74368 0.78744 1.18452 1.19758 1.17299 1.20161 1.04786 1.00081 0.98421 1.21525 0.78562 1.01503 0.97767 0.91255 0.93687 0.89812 0.89320 0.90112 0.85919 0.90102 0.89362 0.88079 0.73513 0.82114 0.82042 0.85736 0.91911 0.88470 0.87062 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.15 71.98 0.66 -1.55 16 2 C -0.14 -2.82 2.88 -11.82 -0.03 -2.86 16 3 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 4 C 0.07 1.00 5.26 70.32 0.37 1.37 16 5 O -0.39 -6.69 10.23 -144.93 -1.48 -8.17 16 6 C 0.05 0.44 6.49 72.42 0.47 0.91 16 7 C 0.07 0.88 6.51 86.50 0.56 1.45 16 8 N -0.61 -14.69 2.55 -834.20 -2.13 -16.81 16 9 C 0.69 24.31 8.06 179.06 1.44 25.76 16 10 O -0.62 -29.59 13.20 -3.98 -0.05 -29.64 16 11 N -0.67 -20.69 5.21 -317.24 -1.65 -22.34 16 12 C 0.20 7.82 6.28 38.13 0.24 8.06 16 13 C -0.21 -6.62 9.97 22.42 0.22 -6.40 16 14 C -0.05 -1.60 10.03 22.24 0.22 -1.38 16 15 C -0.26 -11.72 9.17 22.42 0.21 -11.52 16 16 C 0.13 7.08 6.64 22.56 0.15 7.23 16 17 O -0.24 -15.65 9.76 -22.70 -0.22 -15.87 16 18 C -0.41 -25.72 9.49 67.92 0.64 -25.08 16 19 H 0.11 5.94 5.20 -2.91 -0.02 5.92 16 20 C -0.03 -1.71 5.49 84.83 0.47 -1.24 16 21 N -0.93 -60.60 13.67 21.61 0.30 -60.30 16 22 Si 1.02 44.94 29.55 68.60 2.03 46.97 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 26 C -0.21 -10.96 8.63 22.51 0.19 -10.76 16 27 C 0.13 2.87 4.78 87.40 0.42 3.29 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.08 0.69 7.27 -2.39 -0.02 0.67 16 33 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.08 0.42 7.20 -2.39 -0.02 0.40 16 35 H 0.09 1.00 5.59 -2.38 -0.01 0.99 16 36 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.42 8.78 6.18 -92.71 -0.57 8.21 16 38 H 0.16 3.58 8.06 -2.91 -0.02 3.55 16 39 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 40 H 0.12 5.67 5.63 -2.91 -0.02 5.65 16 41 H 0.27 16.24 8.31 -92.71 -0.77 15.47 16 42 H 0.10 5.66 6.28 -2.91 -0.02 5.64 16 43 H 0.11 1.54 8.10 -2.38 -0.02 1.52 16 44 H 0.06 1.73 7.16 -2.39 -0.02 1.72 16 Total: -1.00 -92.41 354.34 3.48 -88.92 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: 0.46 Total: 29.97 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 6.23 Total: -12.72 kcal Atomic # 7 Polarization: -95.97 SS G_CDS: -3.48 Total: -99.46 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -1.76 Total: -53.68 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -92.41 3.48 -88.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754412199.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.907 kcal (2) G-P(sol) polarization free energy of solvation -92.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds