Wall clock time and date at job start Tue Mar 31 2020 13:32:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.35992 * 116.99843 * 2 1
4 4 C 1.38564 * 120.07465 * 359.97438 * 3 2 1
5 5 C 1.38242 * 120.00349 * 180.02562 * 4 3 2
6 6 C 1.38260 * 120.14444 * 0.02562 * 5 4 3
7 7 C 1.38241 * 120.14260 * 359.97438 * 6 5 4
8 8 C 1.38570 * 120.00441 * 359.72658 * 7 6 5
9 9 O 1.35987 * 120.07523 * 180.27332 * 8 7 6
10 10 C 1.42902 * 117.00290 * 0.27721 * 9 8 7
11 11 C 1.50704 * 109.47294 * 179.97438 * 10 9 8
12 12 O 1.21297 * 119.99821 * 359.97438 * 11 10 9
13 13 N 1.34768 * 119.99666 * 180.02562 * 11 10 9
14 14 N 1.40103 * 119.99850 * 179.97438 * 13 11 10
15 15 C 1.28010 * 120.00247 * 180.02562 * 14 13 11
16 16 C 1.50704 * 120.00063 * 180.02562 * 15 14 13
17 17 H 1.08996 * 109.47160 * 0.02562 * 16 15 14
18 18 C 1.53004 * 109.46914 * 119.99982 * 16 15 14
19 19 C 1.53000 * 109.47009 * 239.99748 * 16 15 14
20 20 C 1.50699 * 109.46706 * 175.00028 * 19 16 15
21 21 H 1.07998 * 120.00288 * 0.02562 * 20 19 16
22 22 C 1.37880 * 119.99726 * 179.97438 * 20 19 16
23 23 N 1.31518 * 119.99891 * 0.02562 * 22 20 19
24 24 Si 1.86800 * 120.00286 * 179.97438 * 22 20 19
25 25 H 1.48500 * 109.46779 * 0.02562 * 24 22 20
26 26 H 1.48493 * 109.46842 * 119.99961 * 24 22 20
27 27 H 1.48500 * 109.47376 * 240.00484 * 24 22 20
28 28 H 1.09001 * 109.47103 * 60.00803 * 1 2 3
29 29 H 1.09004 * 109.47054 * 180.02562 * 1 2 3
30 30 H 1.09000 * 109.47187 * 300.00363 * 1 2 3
31 31 H 1.08004 * 119.99967 * 359.97438 * 4 3 2
32 32 H 1.08000 * 119.92979 * 179.97438 * 5 4 3
33 33 H 1.07994 * 119.92810 * 179.97438 * 6 5 4
34 34 H 1.08005 * 119.99604 * 180.02562 * 7 6 5
35 35 H 1.08999 * 109.46990 * 300.00122 * 10 9 8
36 36 H 1.09000 * 109.46884 * 60.00081 * 10 9 8
37 37 H 0.97001 * 120.00944 * 0.02562 * 13 11 10
38 38 H 1.08000 * 119.99785 * 359.97438 * 15 14 13
39 39 H 1.09000 * 109.47345 * 59.99717 * 18 16 15
40 40 H 1.09001 * 109.46658 * 180.02562 * 18 16 15
41 41 H 1.09001 * 109.47167 * 299.99751 * 18 16 15
42 42 H 1.09002 * 109.46918 * 294.99982 * 19 16 15
43 43 H 1.09000 * 109.46979 * 55.00163 * 19 16 15
44 44 H 0.96999 * 119.99936 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0464 1.2117 0.0000
4 6 1.2932 2.3748 -0.0005
5 6 1.9223 3.6058 -0.0011
6 6 3.3029 3.6799 -0.0016
7 6 4.0602 2.5234 -0.0011
8 6 3.4359 1.2863 0.0057
9 8 4.1795 0.1478 0.0119
10 6 5.6003 0.3007 0.0171
11 6 6.2519 -1.0581 0.0241
12 8 5.5669 -2.0592 0.0251
13 7 7.5956 -1.1610 0.0304
14 7 8.2014 -2.4243 0.0374
15 6 9.4777 -2.5221 0.0439
16 6 10.1293 -3.8810 0.0509
17 1 9.3598 -4.6529 0.0490
18 6 11.0062 -4.0325 -1.1937
19 6 10.9942 -4.0254 1.3047
20 6 11.5473 -5.4254 1.3748
21 1 11.3065 -6.1406 0.6022
22 6 12.3618 -5.7931 2.4249
23 7 12.6555 -4.9221 3.3655
24 14 13.0469 -7.5287 2.5123
25 1 12.5705 -8.3084 1.3417
26 1 14.5309 -7.4762 2.5006
27 1 12.5844 -8.1811 3.7636
28 1 -0.3633 0.5137 -0.8901
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5139 0.8899
31 1 0.2146 2.3196 -0.0014
32 1 1.3341 4.5115 -0.0019
33 1 3.7907 4.6434 -0.0024
34 1 5.1386 2.5841 -0.0011
35 1 5.9100 0.8480 -0.8732
36 1 5.9030 0.8530 0.9067
37 1 8.1435 -0.3605 0.0307
38 1 10.0876 -1.6308 0.0434
39 1 11.7757 -3.2606 -1.1923
40 1 11.4771 -5.0156 -1.1888
41 1 10.3901 -3.9297 -2.0870
42 1 11.8167 -3.3114 1.2629
43 1 10.3877 -3.8296 2.1890
44 1 13.2281 -5.1808 4.1044
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000765992417.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:32:35
Heat of formation + Delta-G solvation = -70.659650 kcal
Electronic energy + Delta-G solvation = -25071.971050 eV
Core-core repulsion = 21183.416813 eV
Total energy + Delta-G solvation = -3888.554236 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.157 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.67936 -40.76502 -39.38401 -38.40177 -37.71758 -36.38091 -34.40005 -32.70628
-31.31219 -31.22018 -29.18666 -28.69627 -28.08973 -25.93668 -23.99338 -23.27800
-23.00385 -21.86243 -20.66686 -19.80807 -19.05653 -18.35527 -18.16815 -17.79529
-17.57892 -17.24699 -16.63594 -16.50042 -15.87269 -15.67716 -15.62619 -15.52233
-15.01799 -14.83843 -14.50729 -14.49641 -13.81565 -13.65678 -13.55450 -13.21138
-13.00743 -12.83998 -12.72632 -12.51133 -12.31817 -12.22960 -12.18161 -12.03735
-12.00140 -11.79099 -11.38235 -11.27827 -11.19780 -10.86850 -10.51909 -9.92035
-9.73913 -8.85783 -8.16168 -6.24141 0.29994 0.44495 0.79396 1.07348
1.42711 1.44710 1.56596 1.70019 2.35770 2.38873 2.45691 2.75830
3.18649 3.29112 3.83152 3.87867 3.89215 4.02441 4.03617 4.04798
4.10723 4.30163 4.36879 4.42914 4.45504 4.49969 4.57653 4.68396
4.70021 4.74023 4.99574 5.20250 5.22057 5.29169 5.34152 5.49002
5.53964 5.54217 5.73463 5.74222 5.87579 5.96041 6.09057 6.28082
6.48949 6.60423 6.90527 7.38116 7.43852 8.95872
Molecular weight = 320.16amu
Principal moments of inertia in cm(-1)
A = 0.025325 B = 0.001799 C = 0.001758
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1105.343291 B =15561.763405 C =15923.619573
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 O -0.343 6.343
3 C 0.071 3.929
4 C -0.175 4.175
5 C -0.116 4.116
6 C -0.117 4.117
7 C -0.173 4.173
8 C 0.067 3.933
9 O -0.319 6.319
10 C 0.055 3.945
11 C 0.525 3.475
12 O -0.551 6.551
13 N -0.575 5.575
14 N -0.296 5.296
15 C 0.118 3.882
16 C -0.037 4.037
17 H 0.057 0.943
18 C -0.120 4.120
19 C 0.041 3.959
20 C -0.528 4.528
21 H 0.064 0.936
22 C 0.000 4.000
23 N -0.932 5.932
24 Si 0.959 3.041
25 H -0.262 1.262
26 H -0.277 1.277
27 H -0.286 1.286
28 H 0.070 0.930
29 H 0.106 0.894
30 H 0.068 0.932
31 H 0.154 0.846
32 H 0.156 0.844
33 H 0.159 0.841
34 H 0.163 0.837
35 H 0.135 0.865
36 H 0.131 0.869
37 H 0.407 0.593
38 H 0.140 0.860
39 H 0.066 0.934
40 H 0.059 0.941
41 H 0.059 0.941
42 H 0.014 0.986
43 H -0.016 1.016
44 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.419 23.867 -9.618 32.237
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 O -0.258 6.258
3 C 0.025 3.975
4 C -0.194 4.194
5 C -0.134 4.134
6 C -0.135 4.135
7 C -0.191 4.191
8 C 0.022 3.978
9 O -0.233 6.233
10 C -0.024 4.024
11 C 0.312 3.688
12 O -0.425 6.425
13 N -0.320 5.320
14 N -0.099 5.099
15 C -0.096 4.096
16 C -0.058 4.058
17 H 0.076 0.924
18 C -0.178 4.178
19 C 0.002 3.998
20 C -0.566 4.566
21 H 0.082 0.918
22 C -0.197 4.197
23 N -0.573 5.573
24 Si 0.785 3.215
25 H -0.186 1.186
26 H -0.202 1.202
27 H -0.212 1.212
28 H 0.088 0.912
29 H 0.125 0.875
30 H 0.087 0.913
31 H 0.172 0.828
32 H 0.174 0.826
33 H 0.176 0.824
34 H 0.180 0.820
35 H 0.153 0.847
36 H 0.148 0.852
37 H 0.248 0.752
38 H 0.157 0.843
39 H 0.085 0.915
40 H 0.078 0.922
41 H 0.078 0.922
42 H 0.032 0.968
43 H 0.002 0.998
44 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -20.780 22.424 -9.481 32.009
hybrid contribution 1.221 -0.104 0.612 1.369
sum -19.560 22.320 -8.869 30.975
Atomic orbital electron populations
1.23315 0.76620 1.05145 1.02429 1.86202 1.23348 1.27027 1.89209
1.18767 0.89659 0.86055 1.02983 1.21388 1.01008 0.91064 1.05936
1.21320 0.95201 0.97463 0.99442 1.21312 0.93924 0.98686 0.99581
1.21472 1.02067 0.90125 1.05439 1.18731 0.88605 0.86293 1.04203
1.86193 1.17535 1.29825 1.89722 1.22519 0.79869 0.92573 1.07441
1.20765 0.80711 0.91802 0.75501 1.90751 1.63374 1.40561 1.47812
1.46616 1.06554 1.04969 1.73839 1.74521 1.14418 1.05203 1.15738
1.26552 0.90579 1.01348 0.91155 1.20148 0.96904 0.90598 0.98179
0.92414 1.21589 0.98787 1.02952 0.94480 1.18958 0.93468 0.96339
0.90995 1.21634 1.28811 0.98113 1.08083 0.91768 1.25884 0.97042
1.01370 0.95439 1.70086 1.38202 1.36410 1.12622 0.85478 0.78115
0.79869 0.78077 1.18611 1.20241 1.21180 0.91173 0.87549 0.91320
0.82802 0.82612 0.82363 0.81979 0.84709 0.85186 0.75216 0.84327
0.91538 0.92219 0.92200 0.96775 0.99782 0.92938
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.28 9.81 113.37 1.11 1.39 16
2 O -0.34 -8.98 10.28 -79.59 -0.82 -9.80 16
3 C 0.07 1.62 6.70 22.57 0.15 1.77 16
4 C -0.18 -2.65 9.04 22.35 0.20 -2.45 16
5 C -0.12 -1.29 10.04 22.28 0.22 -1.06 16
6 C -0.12 -1.25 10.04 22.28 0.22 -1.03 16
7 C -0.17 -2.45 9.04 22.35 0.20 -2.25 16
8 C 0.07 1.52 6.70 22.57 0.15 1.67 16
9 O -0.32 -9.04 9.45 -66.99 -0.63 -9.67 16
10 C 0.06 1.06 5.22 71.24 0.37 1.43 16
11 C 0.53 16.11 8.02 87.66 0.70 16.81 16
12 O -0.55 -24.27 16.84 15.95 0.27 -24.00 16
13 N -0.57 -15.75 6.25 -173.52 -1.08 -16.84 16
14 N -0.30 -10.82 10.92 -50.46 -0.55 -11.37 16
15 C 0.12 3.91 9.66 88.67 0.86 4.76 16
16 C -0.04 -1.47 2.75 -11.54 -0.03 -1.50 16
17 H 0.06 2.53 8.11 -2.39 -0.02 2.51 16
18 C -0.12 -3.97 8.98 71.98 0.65 -3.33 16
19 C 0.04 2.03 4.43 29.85 0.13 2.16 16
20 C -0.53 -28.92 8.41 25.60 0.22 -28.70 16
21 H 0.06 3.39 7.06 -2.91 -0.02 3.37 16
22 C 0.00 0.01 5.46 84.65 0.46 0.47 16
23 N -0.93 -55.52 13.29 21.45 0.28 -55.24 16
24 Si 0.96 43.94 29.54 68.60 2.03 45.97 16
25 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16
26 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16
27 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16
28 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16
29 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16
30 H 0.07 0.75 7.66 -2.39 -0.02 0.74 16
31 H 0.15 1.53 6.30 -2.91 -0.02 1.51 16
32 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16
33 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16
34 H 0.16 1.23 6.30 -2.91 -0.02 1.21 16
35 H 0.14 1.45 7.65 -2.39 -0.02 1.43 16
36 H 0.13 1.55 7.68 -2.39 -0.02 1.53 16
37 H 0.41 6.75 8.63 -213.32 -1.84 4.90 16
38 H 0.14 3.47 8.00 -2.91 -0.02 3.45 16
39 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16
40 H 0.06 2.15 6.95 -2.39 -0.02 2.13 16
41 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16
42 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16
43 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16
44 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16
Total: -1.00 -86.20 379.32 4.29 -81.91
By element:
Atomic # 1 Polarization: 9.73 SS G_CDS: -0.82 Total: 8.90 kcal
Atomic # 6 Polarization: -15.48 SS G_CDS: 5.62 Total: -9.85 kcal
Atomic # 7 Polarization: -82.10 SS G_CDS: -1.35 Total: -83.45 kcal
Atomic # 8 Polarization: -42.29 SS G_CDS: -1.18 Total: -43.47 kcal
Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal
Total: -86.20 4.29 -81.91 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000765992417.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.248 kcal
(2) G-P(sol) polarization free energy of solvation -86.197 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.949 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.907 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.660 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds