Wall clock time and date at job start Tue Mar 31 2020 13:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35985 * 116.99814 * 2 1 4 4 C 1.38697 * 120.00055 * 179.97438 * 3 2 1 5 5 C 1.38129 * 120.00199 * 180.02562 * 4 3 2 6 6 C 1.38704 * 119.99735 * 359.97438 * 5 4 3 7 7 O 1.35978 * 119.99547 * 179.97438 * 6 5 4 8 8 C 1.42905 * 116.99861 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47179 * 179.97438 * 8 7 6 10 10 O 1.21297 * 120.00199 * 359.97438 * 9 8 7 11 11 N 1.34784 * 119.99988 * 179.97438 * 9 8 7 12 12 N 1.40100 * 119.99901 * 179.72421 * 11 9 8 13 13 C 1.28014 * 119.99541 * 179.97438 * 12 11 9 14 14 C 1.50697 * 119.99413 * 179.97438 * 13 12 11 15 15 H 1.09001 * 109.47438 * 0.02562 * 14 13 12 16 16 C 1.53006 * 109.47194 * 240.00042 * 14 13 12 17 17 C 1.53002 * 109.47135 * 120.00615 * 14 13 12 18 18 C 1.50694 * 109.47631 * 185.00040 * 17 14 13 19 19 H 1.08007 * 119.99638 * 359.97438 * 18 17 14 20 20 C 1.37879 * 120.00484 * 179.97438 * 18 17 14 21 21 N 1.31515 * 120.00070 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99624 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47087 * 89.99748 * 22 20 18 24 24 H 1.48497 * 109.47094 * 209.99543 * 22 20 18 25 25 H 1.48505 * 109.47390 * 329.99923 * 22 20 18 26 26 C 1.38693 * 120.00005 * 0.25937 * 6 5 4 27 27 C 1.38138 * 119.99968 * 359.48673 * 26 6 5 28 28 H 1.08994 * 109.47501 * 300.00082 * 1 2 3 29 29 H 1.08998 * 109.46698 * 60.00244 * 1 2 3 30 30 H 1.09002 * 109.46709 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.00068 * 0.02562 * 4 3 2 32 32 H 1.07993 * 120.00169 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.46937 * 59.99756 * 8 7 6 34 34 H 1.09002 * 109.46814 * 299.99566 * 8 7 6 35 35 H 0.97000 * 119.99339 * 0.02562 * 11 9 8 36 36 H 1.07990 * 120.00278 * 0.02562 * 13 12 11 37 37 H 1.09001 * 109.46925 * 300.00306 * 16 14 13 38 38 H 1.08996 * 109.46527 * 60.00531 * 16 14 13 39 39 H 1.09003 * 109.47167 * 180.02562 * 16 14 13 40 40 H 1.09010 * 109.46722 * 304.99831 * 17 14 13 41 41 H 1.08997 * 109.47295 * 64.99232 * 17 14 13 42 42 H 0.96998 * 119.99487 * 179.97438 * 21 20 18 43 43 H 1.07998 * 119.99825 * 179.72465 * 26 6 5 44 44 H 1.07997 * 119.99559 * 180.23769 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4314 1.2843 0.0005 5 6 4.0585 2.5150 0.0011 6 6 3.3030 3.6783 0.0005 7 8 3.9204 4.8898 0.0016 8 6 3.0804 6.0460 0.0015 9 6 3.9345 7.2874 0.0034 10 8 5.1437 7.1917 0.0051 11 7 3.3549 8.5043 0.0031 12 7 4.1490 9.6585 0.0107 13 6 3.5984 10.8141 0.0100 14 6 4.4526 12.0556 0.0187 15 1 5.5051 11.7725 0.0245 16 6 4.1392 12.8815 1.2681 17 6 4.1556 12.8878 -1.2303 18 6 5.0948 14.0650 -1.2848 19 1 5.8299 14.2058 -0.5061 20 6 5.0159 14.9623 -2.3287 21 7 5.8354 15.9899 -2.3758 22 14 3.7451 14.7183 -3.6758 23 1 2.4897 15.4196 -3.3050 24 1 4.2637 15.2734 -4.9518 25 1 3.4716 13.2681 -3.8417 26 6 1.9180 3.6056 0.0049 27 6 1.2909 2.3748 -0.0009 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.0197 0.3786 0.0005 32 1 5.1369 2.5716 0.0019 33 1 2.4505 6.0374 0.8910 34 1 2.4519 6.0383 -0.8890 35 1 2.3879 8.5807 0.0021 36 1 2.5219 10.8994 0.0039 37 1 3.0867 13.1647 1.2618 38 1 4.3508 12.2887 2.1579 39 1 4.7568 13.7797 1.2742 40 1 4.2936 12.2715 -2.1188 41 1 3.1266 13.2454 -1.1926 42 1 5.7800 16.6209 -3.1104 43 1 1.3298 4.5114 0.0090 44 1 0.2124 2.3183 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765993121.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:39 Heat of formation + Delta-G solvation = -44.226548 kcal Electronic energy + Delta-G solvation = -24744.983190 eV Core-core repulsion = 20857.575179 eV Total energy + Delta-G solvation = -3887.408011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.92473 -39.93618 -38.96206 -37.19952 -36.56282 -34.92527 -32.54539 -31.71427 -31.35058 -30.07670 -28.33179 -27.58843 -27.41861 -24.28709 -23.22989 -22.37556 -21.63041 -20.83171 -19.27285 -18.96329 -18.16272 -17.87203 -16.93366 -16.74593 -16.66060 -16.44027 -16.14005 -15.27275 -14.93454 -14.73873 -14.31379 -14.20227 -13.80261 -13.65005 -13.49174 -13.35930 -13.13552 -12.87835 -12.78828 -12.36606 -12.19521 -12.01667 -11.74058 -11.27665 -11.20373 -11.13216 -10.89200 -10.88251 -10.27885 -10.11695 -9.96296 -9.87137 -9.70364 -9.52344 -9.18917 -8.72540 -8.57132 -8.17141 -6.06963 -4.05339 0.80886 1.03354 1.93400 1.97523 2.78159 2.84311 3.17207 3.26971 3.29869 3.35968 3.37902 4.11603 4.30657 4.33822 4.41735 4.49114 4.60072 4.60227 4.66770 4.72799 4.96851 4.98123 5.02027 5.05403 5.13378 5.26698 5.41155 5.58742 5.80763 5.82019 5.86697 5.91651 5.99875 6.12423 6.32057 6.59338 6.72747 6.79738 6.91398 6.97746 7.05376 7.14871 7.27238 7.58958 7.72504 8.40152 8.49251 8.97698 9.54462 11.06085 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026795 B = 0.001704 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.712586 B =16425.250964 C =16728.413781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.089 3.911 4 C -0.109 4.109 5 C -0.106 4.106 6 C 0.096 3.904 7 O -0.287 6.287 8 C 0.049 3.951 9 C 0.530 3.470 10 O -0.482 6.482 11 N -0.591 5.591 12 N -0.250 5.250 13 C 0.106 3.894 14 C -0.033 4.033 15 H 0.087 0.913 16 C -0.129 4.129 17 C -0.003 4.003 18 C -0.517 4.517 19 H 0.077 0.923 20 C 0.068 3.932 21 N -0.900 5.900 22 Si 0.877 3.123 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.267 1.267 26 C -0.171 4.171 27 C -0.168 4.168 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.379 0.621 36 H 0.103 0.897 37 H 0.049 0.951 38 H 0.038 0.962 39 H 0.080 0.920 40 H 0.018 0.982 41 H 0.016 0.984 42 H 0.263 0.737 43 H 0.131 0.869 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.749 -29.369 6.489 33.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.044 3.956 4 C -0.128 4.128 5 C -0.124 4.124 6 C 0.051 3.949 7 O -0.199 6.199 8 C -0.031 4.031 9 C 0.314 3.686 10 O -0.351 6.351 11 N -0.334 5.334 12 N -0.052 5.052 13 C -0.109 4.109 14 C -0.054 4.054 15 H 0.105 0.895 16 C -0.188 4.188 17 C -0.041 4.041 18 C -0.555 4.555 19 H 0.096 0.904 20 C -0.133 4.133 21 N -0.539 5.539 22 Si 0.705 3.295 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.192 1.192 26 C -0.190 4.190 27 C -0.187 4.187 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.118 0.882 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.217 0.783 36 H 0.121 0.879 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.037 0.963 41 H 0.034 0.966 42 H 0.073 0.927 43 H 0.149 0.851 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.718 -30.110 6.386 33.698 hybrid contribution -2.734 0.564 -0.878 2.926 sum -16.452 -29.546 5.508 34.263 Atomic orbital electron populations 1.23046 0.78471 1.03979 1.01278 1.86084 1.21265 1.26650 1.89250 1.18928 0.92346 0.84258 1.00052 1.20263 0.91344 0.97891 1.03297 1.20303 1.00711 0.88740 1.02658 1.18940 0.91022 0.85231 0.99709 1.86180 1.33717 1.11004 1.89025 1.22340 0.92848 0.83960 1.03985 1.19714 0.88973 0.82443 0.77480 1.90783 1.13989 1.85808 1.44525 1.46870 1.07723 1.04008 1.74810 1.74672 1.22124 0.93302 1.15061 1.26818 0.99238 0.92959 0.91897 1.20199 0.98583 0.88341 0.98298 0.89474 1.21690 1.01856 1.00400 0.94814 1.19607 0.97295 0.95278 0.91926 1.21041 1.17883 1.06800 1.09771 0.90448 1.24990 0.95635 0.94952 0.97734 1.69901 1.37772 1.13877 1.32370 0.86826 0.82010 0.78821 0.81889 1.20303 1.21370 1.19153 1.21053 0.93175 0.98583 1.06218 1.21020 1.00068 0.91620 1.05954 0.92715 0.92698 0.88223 0.84263 0.83973 0.88769 0.88727 0.78321 0.87943 0.93183 0.94294 0.90144 0.96341 0.96571 0.92680 0.85074 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.32 -2.54 10.50 -19.69 -0.21 -2.74 16 3 C 0.09 0.75 6.69 -39.24 -0.26 0.49 16 4 C -0.11 -0.92 9.98 -39.45 -0.39 -1.31 16 5 C -0.11 -0.98 9.98 -39.45 -0.39 -1.37 16 6 C 0.10 0.96 6.69 -39.24 -0.26 0.70 16 7 O -0.29 -3.43 9.67 -39.58 -0.38 -3.81 16 8 C 0.05 0.45 5.22 36.00 0.19 0.63 16 9 C 0.53 7.42 8.02 -10.98 -0.09 7.33 16 10 O -0.48 -9.41 16.84 -14.37 -0.24 -9.65 16 11 N -0.59 -7.69 6.25 31.22 0.20 -7.49 16 12 N -0.25 -4.26 10.93 32.67 0.36 -3.91 16 13 C 0.11 1.65 9.66 -13.87 -0.13 1.52 16 14 C -0.03 -0.62 2.75 -91.77 -0.25 -0.87 16 15 H 0.09 1.78 8.11 -51.93 -0.42 1.36 16 16 C -0.13 -2.14 8.99 37.16 0.33 -1.81 16 17 C 0.00 -0.06 3.50 -27.88 -0.10 -0.15 16 18 C -0.52 -13.96 8.96 -34.44 -0.31 -14.27 16 19 H 0.08 2.24 7.30 -52.48 -0.38 1.85 16 20 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 21 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 22 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 26 C -0.17 -1.34 9.03 -39.45 -0.36 -1.70 16 27 C -0.17 -1.24 9.03 -39.45 -0.36 -1.59 16 28 H 0.05 0.18 7.66 -51.93 -0.40 -0.22 16 29 H 0.05 0.19 7.66 -51.93 -0.40 -0.21 16 30 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 32 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.09 0.56 7.65 -51.93 -0.40 0.16 16 34 H 0.09 0.59 7.67 -51.93 -0.40 0.19 16 35 H 0.38 3.18 8.63 -182.60 -1.58 1.60 16 36 H 0.10 1.24 8.00 -52.49 -0.42 0.82 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 40 H 0.02 0.43 7.20 -51.92 -0.37 0.05 16 41 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.13 0.69 6.29 -52.49 -0.33 0.36 16 44 H 0.13 0.65 6.29 -52.49 -0.33 0.32 16 LS Contribution 375.97 15.07 5.67 5.67 Total: -1.00 -36.23 375.97 -7.46 -43.69 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -7.46 Total: -2.34 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -1.49 Total: -9.47 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 1.33 Total: -37.71 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.83 Total: -16.20 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.23 -7.46 -43.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765993121.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.535 kcal (2) G-P(sol) polarization free energy of solvation -36.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds