Wall clock time and date at job start Tue Mar 31 2020 13:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35985 * 116.99814 * 2 1 4 4 C 1.38697 * 120.00055 * 179.97438 * 3 2 1 5 5 C 1.38129 * 120.00199 * 180.02562 * 4 3 2 6 6 C 1.38704 * 119.99735 * 359.97438 * 5 4 3 7 7 O 1.35978 * 119.99547 * 179.97438 * 6 5 4 8 8 C 1.42905 * 116.99861 * 180.02562 * 7 6 5 9 9 C 1.50694 * 109.47179 * 179.97438 * 8 7 6 10 10 O 1.21297 * 120.00199 * 359.97438 * 9 8 7 11 11 N 1.34784 * 119.99988 * 179.97438 * 9 8 7 12 12 N 1.40100 * 119.99901 * 179.72421 * 11 9 8 13 13 C 1.28014 * 119.99541 * 179.97438 * 12 11 9 14 14 C 1.50697 * 119.99413 * 179.97438 * 13 12 11 15 15 H 1.09001 * 109.47438 * 0.02562 * 14 13 12 16 16 C 1.53006 * 109.47194 * 240.00042 * 14 13 12 17 17 C 1.53002 * 109.47135 * 120.00615 * 14 13 12 18 18 C 1.50694 * 109.47631 * 185.00040 * 17 14 13 19 19 H 1.08007 * 119.99638 * 359.97438 * 18 17 14 20 20 C 1.37879 * 120.00484 * 179.97438 * 18 17 14 21 21 N 1.31515 * 120.00070 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99624 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47087 * 89.99748 * 22 20 18 24 24 H 1.48497 * 109.47094 * 209.99543 * 22 20 18 25 25 H 1.48505 * 109.47390 * 329.99923 * 22 20 18 26 26 C 1.38693 * 120.00005 * 0.25937 * 6 5 4 27 27 C 1.38138 * 119.99968 * 359.48673 * 26 6 5 28 28 H 1.08994 * 109.47501 * 300.00082 * 1 2 3 29 29 H 1.08998 * 109.46698 * 60.00244 * 1 2 3 30 30 H 1.09002 * 109.46709 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.00068 * 0.02562 * 4 3 2 32 32 H 1.07993 * 120.00169 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.46937 * 59.99756 * 8 7 6 34 34 H 1.09002 * 109.46814 * 299.99566 * 8 7 6 35 35 H 0.97000 * 119.99339 * 0.02562 * 11 9 8 36 36 H 1.07990 * 120.00278 * 0.02562 * 13 12 11 37 37 H 1.09001 * 109.46925 * 300.00306 * 16 14 13 38 38 H 1.08996 * 109.46527 * 60.00531 * 16 14 13 39 39 H 1.09003 * 109.47167 * 180.02562 * 16 14 13 40 40 H 1.09010 * 109.46722 * 304.99831 * 17 14 13 41 41 H 1.08997 * 109.47295 * 64.99232 * 17 14 13 42 42 H 0.96998 * 119.99487 * 179.97438 * 21 20 18 43 43 H 1.07998 * 119.99825 * 179.72465 * 26 6 5 44 44 H 1.07997 * 119.99559 * 180.23769 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4314 1.2843 0.0005 5 6 4.0585 2.5150 0.0011 6 6 3.3030 3.6783 0.0005 7 8 3.9204 4.8898 0.0016 8 6 3.0804 6.0460 0.0015 9 6 3.9345 7.2874 0.0034 10 8 5.1437 7.1917 0.0051 11 7 3.3549 8.5043 0.0031 12 7 4.1490 9.6585 0.0107 13 6 3.5984 10.8141 0.0100 14 6 4.4526 12.0556 0.0187 15 1 5.5051 11.7725 0.0245 16 6 4.1392 12.8815 1.2681 17 6 4.1556 12.8878 -1.2303 18 6 5.0948 14.0650 -1.2848 19 1 5.8299 14.2058 -0.5061 20 6 5.0159 14.9623 -2.3287 21 7 5.8354 15.9899 -2.3758 22 14 3.7451 14.7183 -3.6758 23 1 2.4897 15.4196 -3.3050 24 1 4.2637 15.2734 -4.9518 25 1 3.4716 13.2681 -3.8417 26 6 1.9180 3.6056 0.0049 27 6 1.2909 2.3748 -0.0009 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.0197 0.3786 0.0005 32 1 5.1369 2.5716 0.0019 33 1 2.4505 6.0374 0.8910 34 1 2.4519 6.0383 -0.8890 35 1 2.3879 8.5807 0.0021 36 1 2.5219 10.8994 0.0039 37 1 3.0867 13.1647 1.2618 38 1 4.3508 12.2887 2.1579 39 1 4.7568 13.7797 1.2742 40 1 4.2936 12.2715 -2.1188 41 1 3.1266 13.2454 -1.1926 42 1 5.7800 16.6209 -3.1104 43 1 1.3298 4.5114 0.0090 44 1 0.2124 2.3183 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765993121.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:38 Heat of formation + Delta-G solvation = -69.366171 kcal Electronic energy + Delta-G solvation = -24746.073326 eV Core-core repulsion = 20857.575179 eV Total energy + Delta-G solvation = -3888.498147 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.59452 -40.79180 -39.75810 -38.45200 -37.25406 -36.39585 -34.40473 -32.79668 -32.18865 -30.75228 -29.51334 -28.85176 -27.89108 -25.77179 -24.04521 -23.23878 -22.80136 -21.89977 -20.67750 -19.58056 -19.24202 -18.74367 -18.44107 -17.86697 -17.49978 -17.22916 -16.59323 -16.28801 -15.85173 -15.74196 -15.69690 -15.25025 -14.98202 -14.81823 -14.50803 -14.37943 -14.09271 -14.03231 -13.59868 -13.42899 -13.30236 -12.86486 -12.78576 -12.65538 -12.51444 -12.49953 -11.86638 -11.77063 -11.69431 -11.57149 -11.43830 -11.30541 -11.21333 -10.88383 -10.70417 -10.10178 -9.93580 -8.77767 -8.22558 -6.25842 0.23778 0.41956 0.79295 1.07758 1.39005 1.42970 1.52979 1.70441 2.33409 2.40994 2.47728 2.70463 3.13033 3.28969 3.76415 3.81249 3.84759 3.94587 4.03496 4.04307 4.17196 4.31239 4.40926 4.43405 4.45993 4.49412 4.50536 4.65753 4.76818 4.88375 4.95481 5.01194 5.06859 5.21594 5.24219 5.29151 5.37751 5.49829 5.54344 5.61467 5.71514 6.02011 6.24244 6.34700 6.47353 6.53542 6.81891 7.37453 7.39085 8.93983 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026795 B = 0.001704 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.712586 B =16425.250964 C =16728.413781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.080 3.920 4 C -0.120 4.120 5 C -0.123 4.123 6 C 0.075 3.925 7 O -0.321 6.321 8 C 0.056 3.944 9 C 0.525 3.475 10 O -0.551 6.551 11 N -0.574 5.574 12 N -0.296 5.296 13 C 0.117 3.883 14 C -0.032 4.032 15 H 0.054 0.946 16 C -0.122 4.122 17 C 0.002 3.998 18 C -0.521 4.521 19 H 0.037 0.963 20 C 0.002 3.998 21 N -0.953 5.953 22 Si 0.948 3.052 23 H -0.259 1.259 24 H -0.292 1.292 25 H -0.248 1.248 26 C -0.166 4.166 27 C -0.167 4.167 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.115 0.885 31 H 0.147 0.853 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.408 0.592 36 H 0.149 0.851 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.048 0.952 40 H 0.012 0.988 41 H 0.040 0.960 42 H 0.264 0.736 43 H 0.163 0.837 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.512 -31.145 6.293 37.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.252 6.252 3 C 0.035 3.965 4 C -0.139 4.139 5 C -0.141 4.141 6 C 0.031 3.969 7 O -0.235 6.235 8 C -0.024 4.024 9 C 0.312 3.688 10 O -0.425 6.425 11 N -0.319 5.319 12 N -0.098 5.098 13 C -0.097 4.097 14 C -0.053 4.053 15 H 0.072 0.928 16 C -0.181 4.181 17 C -0.037 4.037 18 C -0.559 4.559 19 H 0.056 0.944 20 C -0.194 4.194 21 N -0.594 5.594 22 Si 0.772 3.228 23 H -0.183 1.183 24 H -0.219 1.219 25 H -0.172 1.172 26 C -0.184 4.184 27 C -0.185 4.185 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.133 0.867 31 H 0.165 0.835 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.249 0.751 36 H 0.166 0.834 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.030 0.970 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.180 0.820 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -18.547 -31.896 6.210 37.416 hybrid contribution -1.217 1.036 -0.739 1.761 sum -19.765 -30.860 5.471 37.053 Atomic orbital electron populations 1.23331 0.76557 1.05494 1.02284 1.86064 1.23338 1.26602 1.89168 1.19135 0.92489 0.85060 0.99842 1.20395 0.92021 0.97876 1.03591 1.20413 1.00808 0.89403 1.03505 1.19114 0.92147 0.84461 1.01188 1.86122 1.35576 1.12160 1.89681 1.22513 0.91567 0.80745 1.07530 1.20779 0.88735 0.83798 0.75456 1.90758 1.17151 1.86798 1.47791 1.46605 1.08903 1.02601 1.73839 1.74529 1.25059 0.94868 1.15375 1.26490 1.00614 0.91148 0.91495 1.19958 0.97690 0.90043 0.97646 0.92779 1.21599 1.02697 0.99041 0.94732 1.19510 0.97053 0.93691 0.93429 1.21401 1.17695 1.08383 1.08448 0.94431 1.25982 0.98122 0.94586 1.00702 1.70074 1.40359 1.15374 1.33621 0.85695 0.79438 0.79806 0.77908 1.18341 1.21884 1.17193 1.21366 0.92263 1.00000 1.04766 1.21345 1.01409 0.90967 1.04823 0.91599 0.91659 0.86670 0.83538 0.84525 0.84768 0.85050 0.75084 0.83372 0.90674 0.92291 0.93328 0.96986 0.94149 0.92709 0.81954 0.82420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 113.37 1.11 1.21 16 2 O -0.34 -4.82 10.50 -93.38 -0.98 -5.80 16 3 C 0.08 1.22 6.69 22.49 0.15 1.37 16 4 C -0.12 -1.99 9.98 22.35 0.22 -1.77 16 5 C -0.12 -2.30 9.98 22.36 0.22 -2.08 16 6 C 0.08 1.40 6.69 22.49 0.15 1.55 16 7 O -0.32 -7.33 9.67 -74.27 -0.72 -8.05 16 8 C 0.06 0.83 5.22 71.23 0.37 1.20 16 9 C 0.53 13.86 8.02 87.65 0.70 14.56 16 10 O -0.55 -21.91 16.84 15.95 0.27 -21.64 16 11 N -0.57 -13.27 6.25 -173.51 -1.08 -14.36 16 12 N -0.30 -9.60 10.93 -50.47 -0.55 -10.15 16 13 C 0.12 3.32 9.66 88.66 0.86 4.18 16 14 C -0.03 -1.17 2.75 -11.54 -0.03 -1.21 16 15 H 0.05 2.30 8.11 -2.39 -0.02 2.28 16 16 C -0.12 -3.93 8.99 71.98 0.65 -3.29 16 17 C 0.00 0.07 3.50 29.85 0.10 0.18 16 18 C -0.52 -28.84 8.96 25.60 0.23 -28.61 16 19 H 0.04 2.30 7.30 -2.91 -0.02 2.28 16 20 C 0.00 0.14 5.47 84.66 0.46 0.60 16 21 N -0.95 -59.21 13.96 21.45 0.30 -58.91 16 22 Si 0.95 42.76 27.47 68.60 1.88 44.65 16 23 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 24 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 25 H -0.25 -10.37 6.54 99.48 0.65 -9.72 16 26 C -0.17 -2.03 9.03 22.35 0.20 -1.83 16 27 C -0.17 -1.94 9.03 22.35 0.20 -1.74 16 28 H 0.07 0.23 7.66 -2.39 -0.02 0.21 16 29 H 0.06 0.24 7.66 -2.39 -0.02 0.22 16 30 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 32 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 33 H 0.13 0.93 7.65 -2.39 -0.02 0.91 16 34 H 0.13 1.00 7.67 -2.39 -0.02 0.98 16 35 H 0.41 4.91 8.63 -213.32 -1.84 3.07 16 36 H 0.15 2.78 8.00 -2.92 -0.02 2.76 16 37 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.05 1.85 6.95 -2.39 -0.02 1.84 16 40 H 0.01 0.53 7.20 -2.38 -0.02 0.51 16 41 H 0.04 1.57 7.57 -2.39 -0.02 1.55 16 42 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 43 H 0.16 0.84 6.29 -2.91 -0.02 0.82 16 44 H 0.16 0.90 6.29 -2.91 -0.02 0.88 16 Total: -1.00 -85.04 375.97 3.85 -81.19 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -0.88 Total: 8.74 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 5.61 Total: -15.67 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -1.34 Total: -83.42 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -1.43 Total: -35.50 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.88 Total: 44.65 kcal Total: -85.04 3.85 -81.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765993121.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.829 kcal (2) G-P(sol) polarization free energy of solvation -85.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds