Wall clock time and date at job start Tue Mar 31 2020 13:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35973 * 117.00417 * 2 1 4 4 C 1.38699 * 120.00117 * 179.97438 * 3 2 1 5 5 C 1.38133 * 119.99957 * 180.02562 * 4 3 2 6 6 C 1.38706 * 120.00000 * 359.97438 * 5 4 3 7 7 O 1.35981 * 119.99675 * 179.97438 * 6 5 4 8 8 C 1.42905 * 116.99586 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.46972 * 179.97438 * 8 7 6 10 10 O 1.21297 * 119.99980 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00037 * 179.97438 * 9 8 7 12 12 N 1.40093 * 120.00073 * 179.97438 * 11 9 8 13 13 C 1.28012 * 120.00353 * 180.02562 * 12 11 9 14 14 C 1.50699 * 120.00317 * 180.02562 * 13 12 11 15 15 H 1.08995 * 109.47352 * 0.02562 * 14 13 12 16 16 C 1.53003 * 109.46965 * 120.00041 * 14 13 12 17 17 C 1.53003 * 109.46763 * 239.99886 * 14 13 12 18 18 C 1.50708 * 109.46764 * 175.00223 * 17 14 13 19 19 H 1.07997 * 119.99622 * 359.97438 * 18 17 14 20 20 C 1.37876 * 119.99993 * 180.02562 * 18 17 14 21 21 N 1.31514 * 119.99540 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99871 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47291 * 59.99740 * 22 20 18 24 24 H 1.48505 * 109.46924 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46911 * 299.99607 * 22 20 18 26 26 C 1.38692 * 119.99873 * 0.25599 * 6 5 4 27 27 C 1.38140 * 119.99943 * 359.49015 * 26 6 5 28 28 H 1.08999 * 109.46836 * 300.00618 * 1 2 3 29 29 H 1.09005 * 109.46538 * 60.00315 * 1 2 3 30 30 H 1.08994 * 109.47117 * 180.02562 * 1 2 3 31 31 H 1.07993 * 119.99954 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.00036 * 179.97438 * 5 4 3 33 33 H 1.09004 * 109.47054 * 299.99751 * 8 7 6 34 34 H 1.09000 * 109.47187 * 59.99807 * 8 7 6 35 35 H 0.96996 * 119.99844 * 0.02562 * 11 9 8 36 36 H 1.08003 * 119.99720 * 0.02562 * 13 12 11 37 37 H 1.08996 * 109.47192 * 300.00289 * 16 14 13 38 38 H 1.09002 * 109.47060 * 60.00264 * 16 14 13 39 39 H 1.09001 * 109.46855 * 179.97438 * 16 14 13 40 40 H 1.09004 * 109.47193 * 294.99667 * 17 14 13 41 41 H 1.08997 * 109.47224 * 55.00421 * 17 14 13 42 42 H 0.97006 * 119.99537 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.00125 * 179.72263 * 26 6 5 44 44 H 1.08004 * 119.99544 * 180.23131 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2115 0.0000 4 6 3.4315 1.2840 0.0005 5 6 4.0587 2.5147 0.0011 6 6 3.3033 3.6781 0.0005 7 8 3.9208 4.8896 0.0016 8 6 3.0808 6.0458 0.0015 9 6 3.9351 7.2872 0.0034 10 8 5.1443 7.1914 0.0051 11 7 3.3555 8.5041 0.0031 12 7 4.1497 9.6582 0.0054 13 6 3.5993 10.8139 0.0057 14 6 4.4535 12.0554 0.0076 15 1 5.5061 11.7722 0.0081 16 6 4.1498 12.8853 -1.2414 17 6 4.1470 12.8834 1.2571 18 6 5.0859 14.0605 1.3225 19 1 5.8273 14.2033 0.5503 20 6 4.9991 14.9543 2.3687 21 7 4.0965 14.7800 3.3092 22 14 6.1633 16.4128 2.4501 23 1 5.9848 17.2567 1.2414 24 1 5.8657 17.2166 3.6628 25 1 7.5646 15.9248 2.5106 26 6 1.9183 3.6055 0.0048 27 6 1.2911 2.3747 -0.0010 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 4.0197 0.3783 0.0014 32 1 5.1372 2.5712 0.0019 33 1 2.4523 6.0381 -0.8890 34 1 2.4509 6.0373 0.8910 35 1 2.3886 8.5807 0.0021 36 1 2.5226 10.8993 0.0046 37 1 4.3681 12.2954 -2.1316 38 1 3.0972 13.1686 -1.2423 39 1 4.7674 13.7835 -1.2398 40 1 3.1183 13.2413 1.2126 41 1 4.2782 12.2642 2.1445 42 1 4.0356 15.4086 4.0455 43 1 1.3301 4.5113 0.0089 44 1 0.2126 2.3183 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000765993126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:44 Heat of formation + Delta-G solvation = -48.308326 kcal Electronic energy + Delta-G solvation = -24679.468709 eV Core-core repulsion = 20791.883698 eV Total energy + Delta-G solvation = -3887.585010 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.88289 -39.87927 -38.90176 -37.09246 -36.50774 -34.81190 -32.55764 -31.66765 -31.22737 -30.01247 -28.22293 -27.43222 -26.98388 -24.32158 -23.24218 -22.37805 -21.81566 -20.75064 -19.23185 -18.92438 -18.11976 -17.74536 -16.86986 -16.68992 -16.44113 -16.14904 -16.10812 -15.23340 -14.87546 -14.68336 -14.52259 -14.19658 -13.75826 -13.51814 -13.35937 -13.17363 -13.12650 -12.83712 -12.74369 -12.16129 -12.09101 -11.88951 -11.58511 -11.21175 -11.15761 -10.92334 -10.85195 -10.81036 -10.46501 -10.16703 -9.97457 -9.74660 -9.55432 -9.48823 -9.12838 -8.59276 -8.38549 -8.13424 -6.03825 -4.05833 0.84408 1.06961 2.03203 2.05086 2.87316 2.87770 3.23627 3.33281 3.33428 3.37797 3.40668 4.17466 4.34608 4.38476 4.44406 4.54570 4.63365 4.66205 4.69618 4.76551 4.99767 5.05443 5.08663 5.11196 5.25081 5.33037 5.44695 5.62279 5.85431 5.90293 5.91698 6.01464 6.10528 6.16007 6.40690 6.75241 6.83194 6.91441 6.93149 7.04041 7.12663 7.57448 7.60717 7.73665 7.93928 8.34135 8.50214 8.99031 9.58154 11.07560 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032974 B = 0.001595 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.946988 B =17554.004119 C =17628.969729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.088 3.912 4 C -0.110 4.110 5 C -0.106 4.106 6 C 0.097 3.903 7 O -0.287 6.287 8 C 0.049 3.951 9 C 0.530 3.470 10 O -0.484 6.484 11 N -0.590 5.590 12 N -0.255 5.255 13 C 0.112 3.888 14 C -0.043 4.043 15 H 0.081 0.919 16 C -0.127 4.127 17 C 0.034 3.966 18 C -0.517 4.517 19 H 0.059 0.941 20 C 0.058 3.942 21 N -0.896 5.896 22 Si 0.893 3.107 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.276 1.276 26 C -0.171 4.171 27 C -0.168 4.168 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.379 0.621 36 H 0.103 0.897 37 H 0.035 0.965 38 H 0.050 0.950 39 H 0.074 0.926 40 H 0.021 0.979 41 H 0.019 0.981 42 H 0.261 0.739 43 H 0.132 0.868 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.887 -26.374 -8.426 30.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.044 3.956 4 C -0.128 4.128 5 C -0.125 4.125 6 C 0.051 3.949 7 O -0.199 6.199 8 C -0.032 4.032 9 C 0.314 3.686 10 O -0.354 6.354 11 N -0.333 5.333 12 N -0.057 5.057 13 C -0.103 4.103 14 C -0.064 4.064 15 H 0.099 0.901 16 C -0.186 4.186 17 C -0.004 4.004 18 C -0.555 4.555 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.535 5.535 22 Si 0.721 3.279 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.202 1.202 26 C -0.190 4.190 27 C -0.186 4.186 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.118 0.882 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.216 0.784 36 H 0.120 0.880 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.039 0.961 41 H 0.037 0.963 42 H 0.071 0.929 43 H 0.150 0.850 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.980 -27.194 -8.259 30.122 hybrid contribution -1.527 1.373 0.257 2.069 sum -11.507 -25.821 -8.002 29.380 Atomic orbital electron populations 1.23045 0.78480 1.03956 1.01289 1.86078 1.21258 1.26672 1.89264 1.18925 0.92343 0.84252 1.00108 1.20257 0.91337 0.97877 1.03342 1.20302 1.00695 0.88748 1.02707 1.18944 0.91023 0.85258 0.99638 1.86180 1.33746 1.11009 1.88997 1.22351 0.92866 0.83960 1.03980 1.19692 0.88948 0.82453 0.77500 1.90774 1.14011 1.85838 1.44745 1.46860 1.07728 1.04034 1.74695 1.74671 1.22062 0.93287 1.15637 1.26815 0.99271 0.92884 0.91284 1.20423 0.98159 0.88668 0.99131 0.90074 1.21673 1.01849 1.00104 0.94963 1.19126 0.97473 0.93753 0.90077 1.21126 1.17355 1.08652 1.08412 0.92238 1.24999 0.95621 0.98120 0.95610 1.69950 1.34356 1.37155 1.12019 0.86635 0.81435 0.82458 0.77359 1.20193 1.21378 1.20168 1.21060 0.93188 0.98596 1.06171 1.21023 1.00065 0.91619 1.05942 0.92692 0.92713 0.88244 0.84292 0.83995 0.88795 0.88711 0.78354 0.87988 0.94551 0.93125 0.90664 0.96052 0.96299 0.92921 0.85042 0.85112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.32 -2.62 10.50 -19.66 -0.21 -2.82 16 3 C 0.09 0.77 6.69 -39.24 -0.26 0.51 16 4 C -0.11 -0.95 9.98 -39.45 -0.39 -1.34 16 5 C -0.11 -1.01 9.98 -39.45 -0.39 -1.41 16 6 C 0.10 1.00 6.69 -39.24 -0.26 0.74 16 7 O -0.29 -3.55 9.67 -39.59 -0.38 -3.93 16 8 C 0.05 0.47 5.22 36.01 0.19 0.66 16 9 C 0.53 7.76 8.02 -10.99 -0.09 7.67 16 10 O -0.48 -9.72 16.84 -14.37 -0.24 -9.96 16 11 N -0.59 -8.15 6.25 31.22 0.20 -7.95 16 12 N -0.25 -4.56 10.92 32.67 0.36 -4.21 16 13 C 0.11 1.87 9.65 -13.87 -0.13 1.74 16 14 C -0.04 -0.83 2.75 -91.77 -0.25 -1.08 16 15 H 0.08 1.70 8.11 -51.93 -0.42 1.28 16 16 C -0.13 -2.16 8.99 37.16 0.33 -1.83 16 17 C 0.03 0.82 4.43 -27.88 -0.12 0.70 16 18 C -0.52 -13.84 8.41 -34.44 -0.29 -14.13 16 19 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.90 -26.06 13.29 55.43 0.74 -25.32 16 22 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C -0.17 -1.40 9.03 -39.45 -0.36 -1.76 16 27 C -0.17 -1.29 9.03 -39.45 -0.36 -1.65 16 28 H 0.05 0.20 7.66 -51.93 -0.40 -0.20 16 29 H 0.05 0.19 7.66 -51.93 -0.40 -0.20 16 30 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.09 0.60 7.67 -51.93 -0.40 0.20 16 34 H 0.10 0.65 7.65 -51.93 -0.40 0.25 16 35 H 0.38 3.51 8.63 -182.61 -1.58 1.93 16 36 H 0.10 1.38 8.00 -52.48 -0.42 0.96 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.36 6.95 -51.93 -0.36 1.00 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.13 0.75 6.29 -52.49 -0.33 0.42 16 44 H 0.13 0.69 6.29 -52.48 -0.33 0.36 16 LS Contribution 379.57 15.07 5.72 5.72 Total: -1.00 -35.64 379.57 -7.83 -43.48 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -7.49 Total: -2.55 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -1.50 Total: -8.57 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 1.29 Total: -37.48 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.83 Total: -16.71 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.64 -7.83 -43.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765993126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.833 kcal (2) G-P(sol) polarization free energy of solvation -35.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds