Wall clock time and date at job start Tue Mar 31 2020 13:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35804 * 116.99968 * 2 1 4 4 C 1.38843 * 119.92353 * 359.72172 * 3 2 1 5 5 C 1.37787 * 120.14601 * 179.76601 * 4 3 2 6 6 C 1.39720 * 120.00627 * 0.51339 * 5 4 3 7 7 C 1.47562 * 120.07841 * 179.76821 * 6 5 4 8 8 O 1.21608 * 120.00218 * 179.97438 * 7 6 5 9 9 N 1.34783 * 119.99740 * 359.97354 * 7 6 5 10 10 N 1.40101 * 119.99771 * 180.02562 * 9 7 6 11 11 C 1.28010 * 119.99798 * 180.02562 * 10 9 7 12 12 C 1.50702 * 120.00114 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.46886 * 0.02562 * 12 11 10 14 14 C 1.53002 * 109.46936 * 120.00235 * 12 11 10 15 15 C 1.52997 * 109.47216 * 239.99916 * 12 11 10 16 16 C 1.50703 * 109.46911 * 175.00126 * 15 12 11 17 17 H 1.08002 * 120.00244 * 0.02562 * 16 15 12 18 18 C 1.37875 * 120.00345 * 180.02562 * 16 15 12 19 19 N 1.31517 * 119.99481 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00394 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46775 * 89.99968 * 20 18 16 22 22 H 1.48494 * 109.47165 * 209.99803 * 20 18 16 23 23 H 1.48500 * 109.47270 * 329.99973 * 20 18 16 24 24 C 1.39756 * 119.85178 * 359.74048 * 6 5 4 25 25 C 1.38132 * 119.84671 * 0.02562 * 24 6 5 26 26 O 1.36008 * 119.99882 * 179.97438 * 25 24 6 27 27 C 1.42895 * 117.00118 * 0.02562 * 26 25 24 28 28 H 1.08998 * 109.47043 * 59.99833 * 1 2 3 29 29 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47144 * 300.00235 * 1 2 3 31 31 H 1.07998 * 119.92382 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.99649 * 180.23318 * 5 4 3 33 33 H 0.96997 * 120.00008 * 359.97438 * 9 7 6 34 34 H 1.08004 * 119.99856 * 359.97438 * 11 10 9 35 35 H 1.08991 * 109.47314 * 60.00055 * 14 12 11 36 36 H 1.08996 * 109.47225 * 180.02562 * 14 12 11 37 37 H 1.09011 * 109.47043 * 300.00462 * 14 12 11 38 38 H 1.08998 * 109.47665 * 294.99689 * 15 12 11 39 39 H 1.09001 * 109.46925 * 55.00673 * 15 12 11 40 40 H 0.97000 * 119.99944 * 180.02562 * 19 18 16 41 41 H 1.07996 * 120.07837 * 180.02562 * 24 6 5 42 42 H 1.08998 * 109.47349 * 180.02562 * 27 26 25 43 43 H 1.09002 * 109.47146 * 300.00328 * 27 26 25 44 44 H 1.08997 * 109.47075 * 59.99806 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.2878 2.3734 -0.0058 5 6 1.9085 3.6036 -0.0010 6 6 3.3035 3.6823 -0.0010 7 6 3.9699 4.9989 -0.0010 8 8 5.1842 5.0658 -0.0006 9 7 3.2328 6.1273 -0.0015 10 7 3.8655 7.3772 -0.0020 11 6 3.1655 8.4489 -0.0020 12 6 3.8460 9.7936 -0.0020 13 1 4.9270 9.6536 -0.0025 14 6 3.4327 10.5743 -1.2512 15 6 3.4328 10.5743 1.2472 16 6 4.2059 11.8663 1.3106 17 1 4.9202 12.1068 0.5370 18 6 4.0014 12.7415 2.3562 19 7 3.1312 12.4490 3.2979 20 14 4.9602 14.3427 2.4351 21 1 4.2067 15.4064 1.7237 22 1 5.1510 14.7360 3.8543 23 1 6.2851 14.1587 1.7901 24 6 4.0664 2.5113 -0.0005 25 6 3.4377 1.2813 -0.0005 26 8 4.1771 0.1398 -0.0005 27 6 5.5984 0.2874 0.0001 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2095 2.3140 -0.0100 32 1 1.3167 4.5070 -0.0018 33 1 2.2643 6.0739 -0.0023 34 1 2.0870 8.3895 -0.0020 35 1 2.3518 10.7142 -1.2512 36 1 3.9252 11.5466 -1.2515 37 1 3.7270 10.0180 -2.1413 38 1 2.3655 10.7914 1.2036 39 1 3.6466 9.9790 2.1349 40 1 2.9871 13.0648 4.0333 41 1 5.1448 2.5679 -0.0001 42 1 6.0660 -0.6972 -0.0004 43 1 5.9070 0.8362 -0.8896 44 1 5.9064 0.8358 0.8903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765993578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:13 Heat of formation + Delta-G solvation = -71.786745 kcal Electronic energy + Delta-G solvation = -25420.844708 eV Core-core repulsion = 21532.241597 eV Total energy + Delta-G solvation = -3888.603111 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.88489 -40.65932 -39.54763 -38.50212 -37.63445 -36.39939 -34.38904 -32.72778 -31.60300 -31.11833 -28.88895 -28.31782 -28.14180 -26.04492 -24.85808 -23.58764 -22.94675 -21.84981 -20.84592 -19.84814 -18.94657 -18.62023 -18.14084 -17.77091 -17.23970 -17.17160 -16.50522 -16.26383 -16.20038 -15.92145 -15.78889 -15.51814 -15.01734 -14.80822 -14.50706 -14.18173 -13.89382 -13.81535 -13.59419 -13.22020 -13.11345 -12.80614 -12.73011 -12.51587 -12.45504 -12.23927 -12.19055 -12.16181 -12.07158 -11.77457 -11.43046 -11.28789 -11.23821 -10.89844 -10.50295 -10.01858 -9.88201 -9.03304 -8.15197 -6.23263 -0.38826 0.15420 0.96296 1.40074 1.44476 1.45811 1.56131 1.82949 2.18728 2.22093 2.45768 2.64858 3.19581 3.36239 3.61343 3.78945 3.87596 3.95158 4.02979 4.06375 4.30460 4.32428 4.40088 4.44435 4.45900 4.52096 4.58305 4.67463 4.68479 4.77959 4.79648 4.98205 5.01666 5.09366 5.22661 5.29866 5.37686 5.49576 5.54914 5.74242 5.88260 5.95142 6.07000 6.28676 6.42574 6.49125 6.91202 7.36765 7.44687 8.96690 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023017 B = 0.002008 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.198629 B =13943.409671 C =14418.172597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.322 6.322 3 C 0.126 3.874 4 C -0.171 4.171 5 C -0.067 4.067 6 C -0.147 4.147 7 C 0.576 3.424 8 O -0.559 6.559 9 N -0.576 5.576 10 N -0.293 5.293 11 C 0.115 3.885 12 C -0.035 4.035 13 H 0.059 0.941 14 C -0.120 4.120 15 C 0.041 3.959 16 C -0.528 4.528 17 H 0.065 0.935 18 C 0.000 4.000 19 N -0.933 5.933 20 Si 0.959 3.041 21 H -0.269 1.269 22 H -0.288 1.288 23 H -0.267 1.267 24 C -0.119 4.119 25 C 0.076 3.924 26 O -0.321 6.321 27 C 0.017 3.983 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.181 0.819 32 H 0.160 0.840 33 H 0.400 0.600 34 H 0.137 0.863 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.013 0.987 39 H -0.016 1.016 40 H 0.262 0.738 41 H 0.142 0.858 42 H 0.126 0.874 43 H 0.059 0.941 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.099 -25.714 -9.464 28.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.235 6.235 3 C 0.079 3.921 4 C -0.189 4.189 5 C -0.085 4.085 6 C -0.152 4.152 7 C 0.366 3.634 8 O -0.437 6.437 9 N -0.319 5.319 10 N -0.095 5.095 11 C -0.099 4.099 12 C -0.057 4.057 13 H 0.078 0.922 14 C -0.178 4.178 15 C 0.002 3.998 16 C -0.566 4.566 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.573 5.573 20 Si 0.784 3.216 21 H -0.195 1.195 22 H -0.214 1.214 23 H -0.191 1.191 24 C -0.139 4.139 25 C 0.030 3.970 26 O -0.235 6.235 27 C -0.077 4.077 28 H 0.093 0.907 29 H 0.137 0.863 30 H 0.091 0.909 31 H 0.198 0.802 32 H 0.178 0.822 33 H 0.242 0.758 34 H 0.154 0.846 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.031 0.969 39 H 0.002 0.998 40 H 0.070 0.930 41 H 0.160 0.840 42 H 0.144 0.856 43 H 0.078 0.922 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.442 -26.542 -9.318 29.098 hybrid contribution -0.570 1.357 0.594 1.587 sum -8.011 -25.185 -8.725 27.831 Atomic orbital electron populations 1.23510 0.75682 1.06060 1.03002 1.86142 1.23970 1.25601 1.87819 1.18763 0.88993 0.86400 0.97984 1.21353 1.01989 0.89639 1.05914 1.21319 0.91739 0.99390 0.96096 1.19322 0.94714 0.90498 1.10657 1.18419 0.86441 0.83390 0.75142 1.90751 1.15522 1.87630 1.49791 1.46743 1.09281 1.02385 1.73473 1.74484 1.27972 0.91405 1.15611 1.26567 0.99246 0.92740 0.91305 1.20137 0.98998 0.88373 0.98152 0.92234 1.21594 1.02014 0.99777 0.94464 1.18956 0.96235 0.93523 0.91044 1.21597 1.22803 1.03986 1.08241 0.91722 1.25882 0.96415 1.02016 0.95401 1.70083 1.36363 1.38125 1.12778 0.85532 0.79276 0.79669 0.77094 1.19477 1.21367 1.19126 1.21102 1.01165 0.89905 1.01725 1.18227 0.89184 0.85836 1.03741 1.86142 1.20482 1.27728 1.89195 1.23352 0.76846 1.05625 1.01917 0.90745 0.86344 0.90929 0.80165 0.82239 0.75812 0.84603 0.91639 0.92122 0.92178 0.96881 0.99772 0.92951 0.83996 0.85568 0.92194 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.32 -5.54 10.27 -77.34 -0.79 -6.34 16 3 C 0.13 2.35 6.71 22.69 0.15 2.50 16 4 C -0.17 -2.29 9.01 22.31 0.20 -2.09 16 5 C -0.07 -1.07 9.53 22.52 0.21 -0.85 16 6 C -0.15 -3.54 5.87 -20.09 -0.12 -3.66 16 7 C 0.58 18.49 7.88 86.70 0.68 19.18 16 8 O -0.56 -23.20 16.68 -4.06 -0.07 -23.27 16 9 N -0.58 -16.90 6.20 -175.77 -1.09 -17.99 16 10 N -0.29 -10.77 10.93 -50.46 -0.55 -11.32 16 11 C 0.12 3.87 9.66 88.67 0.86 4.72 16 12 C -0.04 -1.39 2.75 -11.54 -0.03 -1.42 16 13 H 0.06 2.57 8.11 -2.39 -0.02 2.55 16 14 C -0.12 -3.96 8.98 71.98 0.65 -3.31 16 15 C 0.04 2.02 4.43 29.85 0.13 2.15 16 16 C -0.53 -28.71 8.41 25.60 0.22 -28.49 16 17 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 18 C 0.00 0.02 5.46 84.65 0.46 0.49 16 19 N -0.93 -55.37 13.29 21.45 0.28 -55.08 16 20 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 21 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 C -0.12 -2.88 8.58 22.61 0.19 -2.69 16 25 C 0.08 1.70 6.69 22.52 0.15 1.85 16 26 O -0.32 -7.07 10.28 -79.62 -0.82 -7.89 16 27 C 0.02 0.26 9.81 113.37 1.11 1.37 16 28 H 0.07 0.28 7.64 -2.39 -0.02 0.26 16 29 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.07 0.31 7.66 -2.39 -0.02 0.29 16 31 H 0.18 1.01 6.27 -2.91 -0.02 0.99 16 32 H 0.16 1.55 6.39 -2.91 -0.02 1.53 16 33 H 0.40 7.98 6.65 -213.32 -1.42 6.56 16 34 H 0.14 3.50 8.00 -2.91 -0.02 3.47 16 35 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.06 2.16 6.95 -2.39 -0.02 2.14 16 37 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 39 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 40 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 41 H 0.14 3.56 5.87 -2.91 -0.02 3.54 16 42 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.06 0.89 7.66 -2.39 -0.02 0.87 16 44 H 0.06 0.89 7.66 -2.39 -0.02 0.87 16 Total: -1.00 -78.96 375.14 4.58 -74.38 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -0.39 Total: 10.93 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 5.98 Total: -9.07 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -1.36 Total: -84.39 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -1.68 Total: -37.50 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -78.96 4.58 -74.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765993578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.595 kcal (2) G-P(sol) polarization free energy of solvation -78.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds