Wall clock time and date at job start Tue Mar 31 2020 13:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35910 * 117.00030 * 2 1 4 4 C 1.38741 * 119.94962 * 359.97438 * 3 2 1 5 5 C 1.38738 * 120.18876 * 179.97438 * 4 3 2 6 6 O 1.35912 * 119.94971 * 179.97438 * 5 4 3 7 7 C 1.42895 * 116.99791 * 0.02562 * 6 5 4 8 8 C 1.38504 * 120.09629 * 0.02562 * 5 4 3 9 9 C 1.39539 * 119.90348 * 0.02562 * 8 5 4 10 10 C 1.47824 * 120.09123 * 180.02562 * 9 8 5 11 11 O 1.21573 * 120.00230 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99493 * 179.97438 * 10 9 8 13 13 N 1.40109 * 119.99659 * 179.72146 * 12 10 9 14 14 C 1.28008 * 119.99837 * 180.27687 * 13 12 10 15 15 C 1.50695 * 120.00178 * 180.02562 * 14 13 12 16 16 H 1.09008 * 109.46832 * 359.97438 * 15 14 13 17 17 C 1.53000 * 109.47381 * 240.00270 * 15 14 13 18 18 C 1.52994 * 109.47448 * 119.99818 * 15 14 13 19 19 C 1.50707 * 109.47367 * 185.00078 * 18 15 14 20 20 H 1.07999 * 119.99833 * 0.02562 * 19 18 15 21 21 C 1.37875 * 120.00170 * 180.02562 * 19 18 15 22 22 N 1.31519 * 119.99896 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00120 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46959 * 59.99863 * 23 21 19 25 25 H 1.48502 * 109.46858 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46958 * 299.99711 * 23 21 19 27 27 C 1.38506 * 119.95323 * 180.25683 * 3 2 1 28 28 H 1.08997 * 109.47181 * 60.00083 * 1 2 3 29 29 H 1.08997 * 109.46768 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47034 * 300.00215 * 1 2 3 31 31 H 1.07998 * 119.90813 * 359.96094 * 4 3 2 32 32 H 1.09003 * 109.46886 * 60.00787 * 7 6 5 33 33 H 1.09004 * 109.46812 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47827 * 299.99890 * 7 6 5 35 35 H 1.07995 * 120.04464 * 179.97438 * 8 5 4 36 36 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 37 37 H 1.08002 * 120.00384 * 0.02562 * 14 13 12 38 38 H 1.08996 * 109.47481 * 179.97438 * 17 15 14 39 39 H 1.08998 * 109.47094 * 299.99654 * 17 15 14 40 40 H 1.09005 * 109.47057 * 59.99537 * 17 15 14 41 41 H 1.08997 * 109.47335 * 305.00273 * 18 15 14 42 42 H 1.09008 * 109.46836 * 65.00570 * 18 15 14 43 43 H 0.97003 * 119.99793 * 180.02562 * 22 21 19 44 44 H 1.07999 * 120.05185 * 0.04545 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2894 2.3739 -0.0005 5 6 1.9141 3.6127 0.0000 6 8 1.1681 4.7488 -0.0011 7 6 -0.2522 4.5922 -0.0021 8 6 3.2968 3.6932 0.0005 9 6 4.0616 2.5261 0.0000 10 6 5.5376 2.6073 0.0011 11 8 6.0868 3.6919 0.0021 12 7 6.2745 1.4788 0.0011 13 7 7.6735 1.5557 -0.0037 14 6 8.3733 0.4839 -0.0090 15 6 9.8780 0.5665 -0.0136 16 1 10.1844 1.6126 -0.0120 17 6 10.4228 -0.1221 -1.2667 18 6 10.4308 -0.1293 1.2318 19 6 11.9249 0.0591 1.2910 20 1 12.4296 0.6194 0.5179 21 6 12.6475 -0.4839 2.3321 22 7 12.0330 -1.1667 3.2734 23 14 14.4993 -0.2498 2.4059 24 1 14.8127 1.2003 2.4695 25 1 15.0360 -0.9263 3.6140 26 1 15.1213 -0.8380 1.1925 27 6 3.4292 1.2823 -0.0054 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2110 2.3147 -0.0016 32 1 -0.5578 4.0421 0.8879 33 1 -0.7260 5.5739 -0.0034 34 1 -0.5565 4.0413 -0.8921 35 1 3.7822 4.6580 0.0005 36 1 5.8363 0.6134 0.0000 37 1 7.8855 -0.4797 -0.0103 38 1 11.5111 -0.0619 -1.2702 39 1 10.1164 -1.1681 -1.2687 40 1 10.0289 0.3737 -2.1540 41 1 9.9746 0.3031 2.1222 42 1 10.2004 -1.1937 1.1857 43 1 12.5413 -1.5484 4.0061 44 1 4.0175 0.3766 -0.0103 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000765995013.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:24 Heat of formation + Delta-G solvation = -72.496278 kcal Electronic energy + Delta-G solvation = -25386.436576 eV Core-core repulsion = 21497.802697 eV Total energy + Delta-G solvation = -3888.633879 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.89349 -40.68638 -39.90155 -38.52167 -37.42930 -36.41803 -34.40274 -32.83283 -31.50910 -31.11600 -28.98127 -28.80958 -27.51244 -26.15231 -24.98959 -23.68578 -23.08725 -21.77596 -20.88148 -19.91503 -18.83646 -18.24287 -18.01337 -17.70626 -17.23554 -17.05242 -16.73267 -16.49068 -16.45625 -16.27376 -15.80230 -15.63669 -15.02445 -14.80450 -14.50895 -14.26277 -13.82919 -13.60439 -13.50462 -13.31411 -13.21801 -12.80100 -12.74661 -12.52353 -12.49204 -12.37768 -12.27036 -12.23868 -11.77712 -11.67277 -11.49463 -11.31034 -11.25799 -10.92770 -10.49413 -10.04659 -9.83242 -9.22813 -8.14343 -6.22693 -0.49949 0.23145 0.93406 1.30376 1.45267 1.47677 1.54892 1.79090 2.15337 2.22116 2.46481 2.61124 3.20190 3.30186 3.70972 3.80294 3.85510 3.89555 4.01771 4.03243 4.26412 4.29859 4.36029 4.36248 4.39053 4.46354 4.58136 4.66903 4.71772 4.74903 4.91877 4.98030 4.98910 5.06343 5.22594 5.24003 5.30182 5.49647 5.55080 5.73995 5.88439 5.99093 6.08512 6.28861 6.34417 6.43423 6.91463 7.31494 7.45122 8.97353 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021987 B = 0.002044 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.155135 B =13697.716836 C =14239.832063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.323 6.323 3 C 0.163 3.837 4 C -0.259 4.259 5 C 0.162 3.838 6 O -0.328 6.328 7 C 0.012 3.988 8 C -0.146 4.146 9 C -0.059 4.059 10 C 0.575 3.425 11 O -0.548 6.548 12 N -0.574 5.574 13 N -0.291 5.291 14 C 0.117 3.883 15 C -0.035 4.035 16 H 0.061 0.939 17 C -0.120 4.120 18 C 0.041 3.959 19 C -0.529 4.529 20 H 0.065 0.935 21 C 0.000 4.000 22 N -0.933 5.933 23 Si 0.960 3.040 24 H -0.273 1.273 25 H -0.287 1.287 26 H -0.263 1.263 27 C -0.159 4.159 28 H 0.071 0.929 29 H 0.122 0.878 30 H 0.069 0.931 31 H 0.174 0.826 32 H 0.071 0.929 33 H 0.121 0.879 34 H 0.072 0.928 35 H 0.131 0.869 36 H 0.400 0.600 37 H 0.136 0.864 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.060 0.940 41 H -0.016 1.016 42 H 0.012 0.988 43 H 0.262 0.738 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.415 2.184 -9.421 32.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.236 6.236 3 C 0.117 3.883 4 C -0.278 4.278 5 C 0.116 3.884 6 O -0.242 6.242 7 C -0.081 4.081 8 C -0.166 4.166 9 C -0.063 4.063 10 C 0.364 3.636 11 O -0.425 6.425 12 N -0.317 5.317 13 N -0.093 5.093 14 C -0.097 4.097 15 C -0.056 4.056 16 H 0.080 0.920 17 C -0.178 4.178 18 C 0.002 3.998 19 C -0.567 4.567 20 H 0.084 0.916 21 C -0.198 4.198 22 N -0.574 5.574 23 Si 0.785 3.215 24 H -0.198 1.198 25 H -0.213 1.213 26 H -0.188 1.188 27 C -0.179 4.179 28 H 0.090 0.910 29 H 0.140 0.860 30 H 0.088 0.912 31 H 0.191 0.809 32 H 0.090 0.910 33 H 0.139 0.861 34 H 0.091 0.909 35 H 0.149 0.851 36 H 0.242 0.758 37 H 0.153 0.847 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.002 0.998 42 H 0.031 0.969 43 H 0.070 0.930 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -31.022 3.855 -9.269 32.606 hybrid contribution 0.360 -1.115 0.586 1.310 sum -30.663 2.740 -8.683 31.986 Atomic orbital electron populations 1.23487 0.75794 1.06199 1.02717 1.86124 1.24001 1.25499 1.87963 1.18500 0.91314 0.84798 0.93685 1.21704 1.02422 0.90582 1.13141 1.18463 0.90090 0.85841 0.94026 1.86129 1.21438 1.28575 1.88027 1.23496 0.75789 1.06060 1.02802 1.20317 0.91363 0.98688 1.06244 1.18980 0.89954 0.93922 1.03469 1.18334 0.86812 0.82879 0.75554 1.90768 1.73763 1.28928 1.48997 1.46771 1.02192 1.09636 1.73131 1.74500 0.89867 1.29154 1.15797 1.26606 0.97360 0.94711 0.91035 1.20148 0.86386 1.00902 0.98206 0.92049 1.21594 1.01552 1.00282 0.94413 1.18957 0.94845 0.94919 0.91044 1.21567 0.93461 1.33144 1.08544 0.91643 1.25897 1.03400 0.95083 0.95384 1.70083 1.37599 1.36760 1.12916 0.85574 0.79829 0.78374 0.77719 1.19828 1.21259 1.18754 1.20526 0.92814 0.96982 1.07533 0.91017 0.86004 0.91202 0.80927 0.91044 0.86072 0.90906 0.85126 0.75831 0.84699 0.92026 0.91707 0.92139 0.99778 0.96938 0.92950 0.83260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.81 113.37 1.11 1.18 16 2 O -0.32 -4.66 10.49 -92.54 -0.97 -5.63 16 3 C 0.16 2.80 6.68 22.45 0.15 2.95 16 4 C -0.26 -3.76 8.02 22.51 0.18 -3.58 16 5 C 0.16 3.18 6.68 22.45 0.15 3.33 16 6 O -0.33 -5.72 10.49 -92.56 -0.97 -6.69 16 7 C 0.01 0.08 9.81 113.37 1.11 1.19 16 8 C -0.15 -3.73 9.53 22.65 0.22 -3.52 16 9 C -0.06 -1.53 5.87 -20.11 -0.12 -1.65 16 10 C 0.58 19.52 7.89 86.78 0.68 20.20 16 11 O -0.55 -23.56 16.68 -3.95 -0.07 -23.62 16 12 N -0.57 -18.08 6.20 -175.60 -1.09 -19.17 16 13 N -0.29 -11.13 10.93 -50.47 -0.55 -11.68 16 14 C 0.12 4.08 9.65 88.66 0.86 4.93 16 15 C -0.04 -1.42 2.75 -11.54 -0.03 -1.45 16 16 H 0.06 2.69 8.11 -2.38 -0.02 2.67 16 17 C -0.12 -4.06 8.98 71.98 0.65 -3.42 16 18 C 0.04 2.05 4.43 29.85 0.13 2.19 16 19 C -0.53 -29.10 8.41 25.60 0.22 -28.89 16 20 H 0.07 3.44 7.06 -2.91 -0.02 3.42 16 21 C 0.00 0.00 5.46 84.65 0.46 0.46 16 22 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 23 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 24 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 25 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 26 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 27 C -0.16 -3.25 9.48 22.65 0.21 -3.03 16 28 H 0.07 0.18 7.65 -2.39 -0.02 0.17 16 29 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.07 0.21 7.66 -2.39 -0.02 0.19 16 31 H 0.17 1.20 4.49 -2.91 -0.01 1.18 16 32 H 0.07 0.28 7.66 -2.39 -0.02 0.26 16 33 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.07 0.26 7.65 -2.39 -0.02 0.24 16 35 H 0.13 3.72 7.64 -2.91 -0.02 3.70 16 36 H 0.40 9.24 6.66 -213.31 -1.42 7.82 16 37 H 0.14 3.72 8.00 -2.91 -0.02 3.70 16 38 H 0.06 2.23 6.95 -2.39 -0.02 2.22 16 39 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 41 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 42 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 43 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 44 H 0.15 2.51 6.40 -2.91 -0.02 2.49 16 Total: -1.00 -78.24 375.47 4.25 -73.99 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -0.39 Total: 11.55 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 5.98 Total: -9.10 kcal Atomic # 7 Polarization: -85.22 SS G_CDS: -1.36 Total: -86.58 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -2.01 Total: -35.94 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -78.24 4.25 -73.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000765995013.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.492 kcal (2) G-P(sol) polarization free energy of solvation -78.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds