Wall clock time and date at job start Tue Mar 31 2020 13:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47345 * 2 1 4 4 C 1.50708 * 109.47118 * 119.99583 * 2 1 3 5 5 N 1.28006 * 120.00165 * 239.99800 * 4 2 1 6 6 N 1.40103 * 120.00042 * 179.97438 * 5 4 2 7 7 C 1.34779 * 119.99917 * 180.02562 * 6 5 4 8 8 S 1.71198 * 119.99960 * 179.97438 * 7 6 5 9 9 N 1.34774 * 119.99963 * 0.02562 * 7 6 5 10 10 C 1.46504 * 119.99949 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47108 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.46818 * 180.02562 * 11 10 9 13 13 C 1.38227 * 119.61686 * 125.02645 * 12 11 10 14 14 C 1.38627 * 119.15663 * 179.70253 * 13 12 11 15 15 C 1.38669 * 118.42388 * 0.51169 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.50231 * 15 14 13 17 17 N 1.31856 * 119.61480 * 304.99563 * 12 11 10 18 18 C 1.52997 * 109.47376 * 239.99481 * 2 1 3 19 19 C 1.50702 * 109.46854 * 65.00026 * 18 2 1 20 20 H 1.08001 * 119.99993 * 359.97438 * 19 18 2 21 21 C 1.37876 * 120.00337 * 179.97438 * 19 18 2 22 22 N 1.31513 * 119.99608 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00314 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46926 * 90.00610 * 23 21 19 25 25 H 1.48498 * 109.47205 * 209.99888 * 23 21 19 26 26 H 1.48496 * 109.47340 * 330.00489 * 23 21 19 27 27 H 1.09001 * 109.46745 * 300.00359 * 1 2 3 28 28 H 1.08996 * 109.46628 * 60.00196 * 1 2 3 29 29 H 1.08995 * 109.47152 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99371 * 60.00313 * 4 2 1 31 31 H 0.96994 * 119.99774 * 0.02562 * 6 5 4 32 32 H 0.97004 * 120.00143 * 0.02562 * 9 7 6 33 33 H 1.08994 * 109.46915 * 59.99732 * 10 9 7 34 34 H 1.09003 * 109.46953 * 300.00318 * 10 9 7 35 35 H 1.08998 * 109.47200 * 60.00285 * 11 10 9 36 36 H 1.08994 * 109.47201 * 300.00064 * 11 10 9 37 37 H 1.07998 * 120.41947 * 359.94797 * 13 12 11 38 38 H 1.08008 * 120.78691 * 180.26734 * 14 13 12 39 39 H 1.08002 * 120.42244 * 179.78749 * 15 14 13 40 40 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 41 41 H 1.08996 * 109.47588 * 184.99582 * 18 2 1 42 42 H 1.09002 * 109.47250 * 305.00659 * 18 2 1 43 43 H 0.97009 * 119.99923 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2306 5 7 2.7683 -0.0882 2.0731 6 7 3.2349 -0.7485 3.2174 7 6 4.0093 -0.0933 4.1048 8 16 4.5789 -0.8999 5.5033 9 7 4.3345 1.1972 3.8916 10 6 5.1759 1.9095 4.8565 11 6 5.3919 3.3476 4.3808 12 6 6.2579 4.0801 5.3731 13 6 7.4173 4.6977 4.9428 14 6 8.2035 5.3742 5.8625 15 6 7.7982 5.3951 7.1885 16 6 6.6268 4.7545 7.5447 17 7 5.9006 4.1249 6.6415 18 6 2.0400 -0.7213 -1.2491 19 6 1.6414 0.0569 -2.4765 20 1 1.0800 0.9740 -2.3757 21 6 1.9933 -0.4018 -3.7282 22 7 2.6765 -1.5188 -3.8510 23 14 1.4985 0.5624 -5.2496 24 1 2.5632 1.5427 -5.5823 25 1 1.3123 -0.3717 -6.3889 26 1 0.2268 1.2829 -4.9872 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.7714 -1.7443 1.4014 31 1 3.0005 -1.6771 3.3709 32 1 4.0109 1.6545 3.0998 33 1 6.1388 1.4057 4.9405 34 1 4.6847 1.9189 5.8295 35 1 4.4288 3.8511 4.2972 36 1 5.8828 3.3385 3.4077 37 1 7.7048 4.6572 3.9025 38 1 9.1124 5.8697 5.5543 39 1 8.3881 5.9096 7.9326 40 1 6.3020 4.7696 8.5745 41 1 3.1263 -0.7995 -1.2055 42 1 1.6054 -1.7199 -1.2951 43 1 2.9238 -1.8418 -4.7317 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766013903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:46 Heat of formation + Delta-G solvation = 51.948932 kcal Electronic energy + Delta-G solvation = -22629.841078 eV Core-core repulsion = 19221.649171 eV Total energy + Delta-G solvation = -3408.191907 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.17712 -40.33209 -38.39985 -36.77818 -34.90196 -34.02527 -33.25332 -32.51097 -29.88552 -28.87756 -26.37149 -25.40975 -24.83273 -24.32474 -22.99675 -22.51686 -21.04154 -19.43701 -19.27911 -18.30480 -17.76252 -17.30571 -17.07652 -16.60241 -16.45894 -16.30925 -15.98793 -15.30813 -15.07225 -14.86584 -14.76778 -14.34418 -14.20327 -13.79647 -13.64374 -13.18222 -13.10873 -12.85629 -12.77548 -12.61405 -12.54451 -12.51877 -12.23270 -12.09538 -11.77986 -11.47349 -11.24708 -11.07504 -10.78892 -10.51311 -10.36418 -10.01718 -9.91173 -9.17169 -9.01132 -8.15705 -6.23896 -0.03095 0.15970 0.38847 0.47961 1.12006 1.45079 1.46106 1.48401 1.56169 1.82498 2.45397 2.85465 3.20133 3.33392 3.69085 3.73089 3.83572 3.95950 4.03288 4.11831 4.26484 4.29566 4.34566 4.45187 4.52745 4.57925 4.72934 4.80586 4.83656 4.90225 4.92299 5.08894 5.19957 5.25948 5.27634 5.30523 5.42772 5.49716 5.53730 5.74425 5.80904 5.87220 6.06609 6.26103 6.75845 6.91898 7.06448 7.44885 8.95856 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.012984 B = 0.002240 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.046766 B =12496.698870 C =13972.408887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.032 4.032 3 H 0.080 0.920 4 C 0.150 3.850 5 N -0.311 5.311 6 N -0.538 5.538 7 C 0.612 3.388 8 S -0.714 6.714 9 N -0.650 5.650 10 C 0.138 3.862 11 C -0.075 4.075 12 C 0.112 3.888 13 C -0.171 4.171 14 C -0.078 4.078 15 C -0.174 4.174 16 C 0.084 3.916 17 N -0.511 5.511 18 C 0.037 3.963 19 C -0.524 4.524 20 H 0.070 0.930 21 C 0.001 3.999 22 N -0.934 5.934 23 Si 0.956 3.044 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.259 1.259 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.134 0.866 31 H 0.418 0.582 32 H 0.420 0.580 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.155 0.845 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.171 0.829 41 H -0.011 1.011 42 H 0.007 0.993 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.217 14.742 16.906 23.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.053 4.053 3 H 0.098 0.902 4 C -0.064 4.064 5 N -0.114 5.114 6 N -0.259 5.259 7 C 0.247 3.753 8 S -0.591 6.591 9 N -0.277 5.277 10 C 0.014 3.986 11 C -0.114 4.114 12 C -0.025 4.025 13 C -0.191 4.191 14 C -0.104 4.104 15 C -0.193 4.193 16 C -0.072 4.072 17 N -0.221 5.221 18 C -0.001 4.001 19 C -0.563 4.563 20 H 0.088 0.912 21 C -0.197 4.197 22 N -0.574 5.574 23 Si 0.782 3.218 24 H -0.204 1.204 25 H -0.216 1.216 26 H -0.183 1.183 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.151 0.849 31 H 0.263 0.737 32 H 0.261 0.739 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.127 0.873 37 H 0.172 0.828 38 H 0.180 0.820 39 H 0.180 0.820 40 H 0.188 0.812 41 H 0.008 0.992 42 H 0.025 0.975 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.426 14.753 18.236 24.321 hybrid contribution -0.051 -0.369 -2.151 2.183 sum 6.374 14.384 16.085 22.501 Atomic orbital electron populations 1.21634 0.92121 1.02473 1.02066 1.20210 0.97203 0.99318 0.88614 0.90185 1.26716 0.88541 0.99070 0.92113 1.74144 1.14989 1.25925 0.96372 1.46269 1.47326 1.14139 1.18211 1.21498 0.80821 0.85466 0.87516 1.93676 1.72292 1.71440 1.21668 1.45006 1.48322 1.07955 1.26428 1.21598 0.94503 0.90849 0.91603 1.20710 1.00986 0.92091 0.97572 1.21019 0.94077 0.96171 0.91281 1.22277 0.95133 0.99117 1.02569 1.22015 0.99698 0.95675 0.92989 1.22507 0.98036 1.00811 0.97969 1.23167 0.91826 0.92698 0.99555 1.67431 1.34155 1.17909 1.02607 1.18987 0.94591 0.95334 0.91186 1.21579 1.34476 1.08769 0.91428 0.91209 1.25865 0.95354 0.95968 1.02529 1.70083 1.40232 1.22845 1.24265 0.85574 0.79092 0.78325 0.78834 1.20382 1.21585 1.18330 0.91724 0.91813 0.92277 0.84878 0.73740 0.73923 0.90796 0.90067 0.88492 0.87349 0.82769 0.82023 0.82042 0.81192 0.99243 0.97466 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.48 8.99 71.98 0.65 -2.83 16 2 C -0.03 -1.03 2.75 -11.54 -0.03 -1.06 16 3 H 0.08 2.60 8.11 -2.39 -0.02 2.58 16 4 C 0.15 4.04 9.66 88.67 0.86 4.90 16 5 N -0.31 -8.29 10.24 -50.46 -0.52 -8.81 16 6 N -0.54 -14.19 6.25 -59.12 -0.37 -14.56 16 7 C 0.61 17.56 7.97 179.05 1.43 18.99 16 8 S -0.71 -25.72 29.32 -56.49 -1.66 -27.37 16 9 N -0.65 -15.18 5.52 -350.16 -1.93 -17.11 16 10 C 0.14 3.01 4.99 86.38 0.43 3.44 16 11 C -0.08 -1.19 5.73 29.85 0.17 -1.01 16 12 C 0.11 2.00 6.18 42.55 0.26 2.26 16 13 C -0.17 -2.31 9.71 22.36 0.22 -2.09 16 14 C -0.08 -0.84 10.18 22.47 0.23 -0.62 16 15 C -0.17 -1.93 10.11 22.36 0.23 -1.70 16 16 C 0.08 1.31 11.18 84.67 0.95 2.26 16 17 N -0.51 -10.57 9.88 -183.88 -1.82 -12.39 16 18 C 0.04 1.66 4.43 29.85 0.13 1.79 16 19 C -0.52 -25.98 8.41 25.60 0.22 -25.76 16 20 H 0.07 3.25 7.06 -2.91 -0.02 3.23 16 21 C 0.00 0.03 5.46 84.65 0.46 0.49 16 22 N -0.93 -53.06 13.29 21.45 0.28 -52.77 16 23 Si 0.96 41.03 29.54 68.60 2.03 43.06 16 24 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 26 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 27 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 1.97 6.95 -2.39 -0.02 1.95 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.13 3.03 8.00 -2.91 -0.02 3.00 16 31 H 0.42 10.13 8.61 -213.33 -1.84 8.29 16 32 H 0.42 8.73 7.51 -92.71 -0.70 8.04 16 33 H 0.07 1.82 7.99 -2.39 -0.02 1.80 16 34 H 0.08 2.13 7.80 -2.39 -0.02 2.11 16 35 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.11 1.26 7.87 -2.39 -0.02 1.25 16 37 H 0.15 1.39 7.95 -2.91 -0.02 1.37 16 38 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 39 H 0.16 0.81 8.06 -2.91 -0.02 0.78 16 40 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 41 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 42 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.26 14.15 8.31 -92.70 -0.77 13.38 16 Total: -1.00 -69.61 382.12 0.70 -68.90 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -1.51 Total: 21.99 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 6.19 Total: -0.94 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -4.35 Total: -105.63 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Atomic # 16 Polarization: -25.72 SS G_CDS: -1.66 Total: -27.37 kcal Total: -69.61 0.70 -68.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766013903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.853 kcal (2) G-P(sol) polarization free energy of solvation -69.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds