Wall clock time and date at job start Tue Mar 31 2020 13:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.49884 * 2 1 4 4 C 1.53188 * 109.49933 * 120.06147 * 2 1 3 5 5 N 1.46927 * 108.77745 * 174.58716 * 4 2 1 6 6 C 1.34768 * 120.63038 * 126.37460 * 5 4 2 7 7 O 1.21584 * 120.00252 * 6.98927 * 6 5 4 8 8 N 1.34781 * 120.00056 * 186.99668 * 6 5 4 9 9 C 1.39941 * 120.00447 * 189.03779 * 8 6 5 10 10 C 1.38961 * 120.03053 * 337.14177 * 9 8 6 11 11 C 1.38160 * 120.06350 * 180.02562 * 10 9 8 12 12 C 1.38166 * 120.14286 * 359.97438 * 11 10 9 13 13 C 1.38911 * 120.06749 * 359.97438 * 12 11 10 14 14 O 1.35749 * 120.03691 * 180.02562 * 13 12 11 15 15 C 1.34829 * 117.00277 * 172.31792 * 14 13 12 16 16 H 1.07995 * 119.99796 * 5.30107 * 15 14 13 17 17 C 1.38651 * 119.99827 * 185.30713 * 15 14 13 18 18 N 1.31561 * 120.00419 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99849 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47257 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47321 * 119.99967 * 19 17 15 22 22 H 1.48500 * 109.47114 * 239.99941 * 19 17 15 23 23 C 1.38702 * 120.04017 * 157.16084 * 9 8 6 24 24 C 1.46930 * 118.73653 * 306.64626 * 5 4 2 25 25 C 1.52757 * 109.00873 * 53.30824 * 24 5 4 26 26 C 1.53039 * 109.49837 * 239.90250 * 2 1 3 27 27 H 1.09005 * 109.45894 * 58.67574 * 26 2 1 28 28 O 1.42899 * 109.46034 * 298.70126 * 26 2 1 29 29 H 1.09001 * 109.47150 * 299.93812 * 1 2 3 30 30 H 1.09000 * 109.47280 * 59.93483 * 1 2 3 31 31 H 1.09002 * 109.46918 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.58368 * 54.80367 * 4 2 1 33 33 H 1.08996 * 109.70885 * 294.44481 * 4 2 1 34 34 H 0.96999 * 119.99929 * 9.03348 * 8 6 5 35 35 H 1.08000 * 119.97071 * 0.03689 * 10 9 8 36 36 H 1.08000 * 119.92973 * 179.72332 * 11 10 9 37 37 H 1.07993 * 119.96694 * 180.02562 * 12 11 10 38 38 H 0.96995 * 119.99923 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.06513 * 359.97438 * 23 9 8 40 40 H 1.08996 * 109.58617 * 173.14514 * 24 5 4 41 41 H 1.09007 * 109.58676 * 293.56587 * 24 5 4 42 42 H 1.09004 * 109.56408 * 185.55283 * 25 24 5 43 43 H 1.08997 * 109.38846 * 65.51311 * 25 24 5 44 44 H 0.96701 * 113.99803 * 179.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7233 1.2498 5 7 3.5046 -0.8287 1.1698 6 6 4.2811 -0.3849 2.1780 7 8 3.7729 -0.0095 3.2168 8 7 5.6209 -0.3571 2.0347 9 6 6.4370 -0.0788 3.1369 10 6 5.9231 0.6164 4.2248 11 6 6.7283 0.8920 5.3132 12 6 8.0462 0.4771 5.3239 13 6 8.5655 -0.2192 4.2399 14 8 9.8603 -0.6269 4.2514 15 6 10.2575 -1.4320 3.2454 16 1 9.5816 -1.6546 2.4330 17 6 11.5336 -1.9742 3.2540 18 7 12.3570 -1.7027 4.2435 19 14 12.0841 -3.0890 1.8600 20 1 10.9801 -3.2351 0.8775 21 1 13.2686 -2.4951 1.1895 22 1 12.4410 -4.4235 2.4049 23 6 7.7597 -0.4963 3.1446 24 6 4.1055 -1.4215 -0.0328 25 6 3.5708 -0.6953 -1.2658 26 6 2.0408 -0.7234 -1.2481 27 1 1.6583 -0.2249 -2.1389 28 8 1.5897 -2.0793 -1.2306 29 1 -0.3633 0.5129 0.8905 30 1 -0.3634 0.5148 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6052 -1.7212 1.2985 33 1 1.7637 -0.1594 2.1403 34 1 6.0196 -0.5301 1.1675 35 1 4.8932 0.9415 4.2197 36 1 6.3279 1.4363 6.1556 37 1 8.6729 0.6937 6.1763 38 1 13.2498 -2.0817 4.2493 39 1 8.1614 -1.0368 2.3003 40 1 5.1895 -1.3159 0.0103 41 1 3.8412 -2.4775 -0.0908 42 1 3.9334 -1.1903 -2.1668 43 1 3.9158 0.3385 -1.2548 44 1 1.8765 -2.5990 -1.9939 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806211619.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:27 Heat of formation + Delta-G solvation = -63.817622 kcal Electronic energy + Delta-G solvation = -26994.599423 eV Core-core repulsion = 23106.341879 eV Total energy + Delta-G solvation = -3888.257544 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.89739 -39.33937 -38.45263 -36.50014 -35.51849 -34.49395 -33.35864 -32.19133 -31.55019 -29.32715 -28.47615 -26.86157 -25.54422 -25.13279 -22.81704 -22.02108 -21.79148 -20.42756 -19.61996 -18.55701 -17.86743 -17.34150 -17.07019 -16.13616 -15.61854 -15.46958 -15.16794 -15.02798 -14.70343 -14.36236 -14.13684 -14.01686 -13.81378 -13.66820 -13.38277 -13.03069 -12.94279 -12.51326 -12.34929 -12.18492 -11.84939 -11.74020 -11.68318 -11.48715 -11.31186 -11.23045 -11.03531 -10.73692 -10.68293 -10.43828 -10.32688 -9.89891 -9.46484 -9.28192 -8.81029 -8.73197 -7.61515 -7.06207 -6.42191 -4.01927 2.12099 2.47054 2.58273 3.10969 3.12497 3.17796 3.27435 3.77177 3.85459 3.97209 4.25651 4.35328 4.56205 4.60769 4.67758 4.89777 5.04793 5.10960 5.13402 5.23285 5.25719 5.35149 5.37190 5.44065 5.57286 5.67365 5.69954 5.79594 5.81475 6.03985 6.09789 6.15010 6.19739 6.30036 6.49588 6.60500 6.87984 7.06583 7.17724 7.24196 7.25742 7.43824 7.49997 7.91545 8.01087 8.04293 8.61277 9.03407 9.75522 10.76262 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016058 B = 0.003110 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.287569 B = 9001.860635 C =10550.014576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.084 0.916 4 C 0.140 3.860 5 N -0.628 5.628 6 C 0.708 3.292 7 O -0.567 6.567 8 N -0.678 5.678 9 C 0.196 3.804 10 C -0.226 4.226 11 C -0.063 4.063 12 C -0.206 4.206 13 C 0.171 3.829 14 O -0.179 6.179 15 C -0.390 4.390 16 H 0.089 0.911 17 C 0.038 3.962 18 N -0.864 5.864 19 Si 0.940 3.060 20 H -0.269 1.269 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.265 4.265 24 C 0.115 3.885 25 C -0.171 4.171 26 C 0.111 3.889 27 H 0.057 0.943 28 O -0.560 6.560 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.401 0.599 35 H 0.150 0.850 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.269 0.731 39 H 0.127 0.873 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.048 1.222 -14.144 24.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.102 0.898 4 C 0.017 3.983 5 N -0.365 5.365 6 C 0.410 3.590 7 O -0.444 6.444 8 N -0.325 5.325 9 C 0.102 3.898 10 C -0.246 4.246 11 C -0.082 4.082 12 C -0.226 4.226 13 C 0.117 3.883 14 O -0.083 6.083 15 C -0.467 4.467 16 H 0.107 0.893 17 C -0.166 4.166 18 N -0.499 5.499 19 Si 0.765 3.235 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.287 4.287 24 C -0.009 4.009 25 C -0.210 4.210 26 C 0.052 3.948 27 H 0.075 0.925 28 O -0.365 6.365 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.111 0.889 34 H 0.238 0.762 35 H 0.167 0.833 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.079 0.921 39 H 0.145 0.855 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -20.294 1.631 -12.626 23.956 hybrid contribution 0.963 -0.914 -1.955 2.363 sum -19.331 0.717 -14.581 24.224 Atomic orbital electron populations 1.21689 0.93678 1.02783 1.01778 1.21574 0.96890 0.99252 0.94259 0.89762 1.21436 0.77663 1.01291 0.97939 1.47299 1.06629 1.64483 1.18134 1.15838 0.81169 0.78559 0.83417 1.90777 1.72961 1.53811 1.26833 1.42751 1.04587 1.73100 1.12066 1.17335 0.89253 0.96092 0.87159 1.21409 1.02388 1.06078 0.94749 1.20625 0.92579 0.97738 0.97260 1.20274 0.95996 1.07547 0.98764 1.19012 0.84900 0.92212 0.92157 1.84005 1.19380 1.58008 1.46884 1.21298 0.99044 1.25505 1.00823 0.89315 1.25264 0.95156 0.97794 0.98350 1.70047 1.07095 1.42359 1.30411 0.85672 0.78911 0.79299 0.79618 1.19293 1.20204 1.20184 1.20673 0.93564 1.12240 1.02237 1.21439 0.97422 0.97966 0.84028 1.22599 0.97220 1.02557 0.98613 1.21749 0.91993 0.83297 0.97749 0.92498 1.86534 1.77825 1.22639 1.49517 0.92308 0.92593 0.91538 0.90836 0.88890 0.76201 0.83256 0.86725 0.86554 0.92141 0.85524 0.90479 0.90514 0.90186 0.90364 0.77681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.07 37.16 0.34 -0.66 16 2 C -0.10 -0.81 2.70 -90.51 -0.24 -1.06 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 4 C 0.14 1.50 5.46 -3.71 -0.02 1.48 16 5 N -0.63 -7.51 2.98 -178.76 -0.53 -8.04 16 6 C 0.71 11.30 8.20 -86.92 -0.71 10.59 16 7 O -0.57 -10.83 12.52 5.29 0.07 -10.77 16 8 N -0.68 -10.88 5.23 -14.24 -0.07 -10.96 16 9 C 0.20 3.90 6.50 -83.72 -0.54 3.36 16 10 C -0.23 -4.57 8.90 -39.34 -0.35 -4.92 16 11 C -0.06 -1.24 10.03 -39.64 -0.40 -1.64 16 12 C -0.21 -4.56 9.99 -39.36 -0.39 -4.96 16 13 C 0.17 4.23 6.64 -39.13 -0.26 3.97 16 14 O -0.18 -5.15 9.76 0.05 0.00 -5.15 16 15 C -0.39 -10.89 9.49 30.89 0.29 -10.60 16 16 H 0.09 2.28 5.22 -52.49 -0.27 2.01 16 17 C 0.04 1.05 5.49 -17.51 -0.10 0.95 16 18 N -0.86 -25.44 13.67 55.48 0.76 -24.68 16 19 Si 0.94 20.38 29.55 -169.99 -5.02 15.35 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 C -0.26 -5.85 9.04 -39.21 -0.35 -6.20 16 24 C 0.12 1.01 6.16 -3.93 -0.02 0.99 16 25 C -0.17 -1.09 5.79 -26.84 -0.16 -1.25 16 26 C 0.11 0.73 3.19 -26.69 -0.09 0.64 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 O -0.56 -3.76 11.43 -35.23 -0.40 -4.16 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.51 7.72 -51.93 -0.40 0.11 16 32 H 0.07 0.81 7.81 -51.92 -0.41 0.40 16 33 H 0.09 1.14 7.05 -51.93 -0.37 0.77 16 34 H 0.40 5.24 6.36 -40.82 -0.26 4.98 16 35 H 0.15 3.04 5.17 -52.71 -0.27 2.77 16 36 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 37 H 0.12 2.47 8.06 -52.49 -0.42 2.04 16 38 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.13 2.72 5.67 -52.49 -0.30 2.42 16 40 H 0.08 0.65 5.63 -51.93 -0.29 0.36 16 41 H 0.08 0.66 7.81 -51.92 -0.41 0.25 16 42 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.38 1.13 9.08 45.56 0.41 1.54 16 LS Contribution 353.89 15.07 5.33 5.33 Total: -1.00 -34.34 353.89 -7.96 -42.29 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -5.08 Total: 10.08 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -3.01 Total: -9.30 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.15 Total: -43.68 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.34 Total: -20.08 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.34 -7.96 -42.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806211619.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.523 kcal (2) G-P(sol) polarization free energy of solvation -34.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds