Wall clock time and date at job start Tue Mar 31 2020 13:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.49884 * 2 1 4 4 C 1.53188 * 109.49933 * 120.06147 * 2 1 3 5 5 N 1.46927 * 108.77745 * 174.58716 * 4 2 1 6 6 C 1.34768 * 120.63038 * 126.37460 * 5 4 2 7 7 O 1.21584 * 120.00252 * 6.98927 * 6 5 4 8 8 N 1.34781 * 120.00056 * 186.99668 * 6 5 4 9 9 C 1.39941 * 120.00447 * 189.03779 * 8 6 5 10 10 C 1.38961 * 120.03053 * 337.14177 * 9 8 6 11 11 C 1.38160 * 120.06350 * 180.02562 * 10 9 8 12 12 C 1.38166 * 120.14286 * 359.97438 * 11 10 9 13 13 C 1.38911 * 120.06749 * 359.97438 * 12 11 10 14 14 O 1.35749 * 120.03691 * 180.02562 * 13 12 11 15 15 C 1.34829 * 117.00277 * 172.31792 * 14 13 12 16 16 H 1.07995 * 119.99796 * 5.30107 * 15 14 13 17 17 C 1.38651 * 119.99827 * 185.30713 * 15 14 13 18 18 N 1.31561 * 120.00419 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99849 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47257 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47321 * 119.99967 * 19 17 15 22 22 H 1.48500 * 109.47114 * 239.99941 * 19 17 15 23 23 C 1.38702 * 120.04017 * 157.16084 * 9 8 6 24 24 C 1.46930 * 118.73653 * 306.64626 * 5 4 2 25 25 C 1.52757 * 109.00873 * 53.30824 * 24 5 4 26 26 C 1.53039 * 109.49837 * 239.90250 * 2 1 3 27 27 H 1.09005 * 109.45894 * 58.67574 * 26 2 1 28 28 O 1.42899 * 109.46034 * 298.70126 * 26 2 1 29 29 H 1.09001 * 109.47150 * 299.93812 * 1 2 3 30 30 H 1.09000 * 109.47280 * 59.93483 * 1 2 3 31 31 H 1.09002 * 109.46918 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.58368 * 54.80367 * 4 2 1 33 33 H 1.08996 * 109.70885 * 294.44481 * 4 2 1 34 34 H 0.96999 * 119.99929 * 9.03348 * 8 6 5 35 35 H 1.08000 * 119.97071 * 0.03689 * 10 9 8 36 36 H 1.08000 * 119.92973 * 179.72332 * 11 10 9 37 37 H 1.07993 * 119.96694 * 180.02562 * 12 11 10 38 38 H 0.96995 * 119.99923 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.06513 * 359.97438 * 23 9 8 40 40 H 1.08996 * 109.58617 * 173.14514 * 24 5 4 41 41 H 1.09007 * 109.58676 * 293.56587 * 24 5 4 42 42 H 1.09004 * 109.56408 * 185.55283 * 25 24 5 43 43 H 1.08997 * 109.38846 * 65.51311 * 25 24 5 44 44 H 0.96701 * 113.99803 * 179.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7233 1.2498 5 7 3.5046 -0.8287 1.1698 6 6 4.2811 -0.3849 2.1780 7 8 3.7729 -0.0095 3.2168 8 7 5.6209 -0.3571 2.0347 9 6 6.4370 -0.0788 3.1369 10 6 5.9231 0.6164 4.2248 11 6 6.7283 0.8920 5.3132 12 6 8.0462 0.4771 5.3239 13 6 8.5655 -0.2192 4.2399 14 8 9.8603 -0.6269 4.2514 15 6 10.2575 -1.4320 3.2454 16 1 9.5816 -1.6546 2.4330 17 6 11.5336 -1.9742 3.2540 18 7 12.3570 -1.7027 4.2435 19 14 12.0841 -3.0890 1.8600 20 1 10.9801 -3.2351 0.8775 21 1 13.2686 -2.4951 1.1895 22 1 12.4410 -4.4235 2.4049 23 6 7.7597 -0.4963 3.1446 24 6 4.1055 -1.4215 -0.0328 25 6 3.5708 -0.6953 -1.2658 26 6 2.0408 -0.7234 -1.2481 27 1 1.6583 -0.2249 -2.1389 28 8 1.5897 -2.0793 -1.2306 29 1 -0.3633 0.5129 0.8905 30 1 -0.3634 0.5148 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6052 -1.7212 1.2985 33 1 1.7637 -0.1594 2.1403 34 1 6.0196 -0.5301 1.1675 35 1 4.8932 0.9415 4.2197 36 1 6.3279 1.4363 6.1556 37 1 8.6729 0.6937 6.1763 38 1 13.2498 -2.0817 4.2493 39 1 8.1614 -1.0368 2.3003 40 1 5.1895 -1.3159 0.0103 41 1 3.8412 -2.4775 -0.0908 42 1 3.9334 -1.1903 -2.1668 43 1 3.9158 0.3385 -1.2548 44 1 1.8765 -2.5990 -1.9939 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806211619.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:26 Heat of formation + Delta-G solvation = -88.238737 kcal Electronic energy + Delta-G solvation = -26995.658402 eV Core-core repulsion = 23106.341879 eV Total energy + Delta-G solvation = -3889.316523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.07350 -40.70601 -39.72271 -38.10904 -36.41223 -35.82908 -34.33044 -34.06822 -32.25007 -30.96765 -30.14321 -27.66136 -27.24996 -26.28506 -23.54861 -23.46232 -23.43047 -21.49592 -20.70176 -19.88883 -19.54365 -18.69870 -17.87973 -17.53106 -16.81899 -16.67485 -16.47009 -16.05754 -16.00211 -15.69380 -15.54484 -15.47082 -15.06198 -14.74167 -14.56099 -14.34758 -14.16343 -13.62794 -13.55531 -13.30693 -13.17280 -12.89784 -12.83356 -12.70303 -12.44835 -12.41313 -12.25168 -12.07888 -11.93967 -11.46491 -11.36777 -11.29800 -10.85391 -10.80315 -10.68026 -9.75914 -9.28496 -8.78922 -8.44827 -6.13784 0.46874 0.73831 1.36410 1.41610 1.45699 1.55062 1.96339 2.18965 2.69716 2.87061 3.18170 3.37443 3.52826 3.64845 3.78804 3.93117 4.01662 4.11251 4.24493 4.34280 4.37575 4.47780 4.51360 4.57682 4.62951 4.69161 4.73894 4.80462 4.83682 4.92432 5.04971 5.09943 5.12099 5.13956 5.18790 5.27923 5.44278 5.48290 5.57057 5.69211 5.75601 5.87329 6.03644 6.25397 6.77118 6.98330 6.99519 7.34347 7.79834 8.78613 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016058 B = 0.003110 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.287569 B = 9001.860635 C =10550.014576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.098 4.098 3 H 0.082 0.918 4 C 0.138 3.862 5 N -0.618 5.618 6 C 0.702 3.298 7 O -0.602 6.602 8 N -0.670 5.670 9 C 0.204 3.796 10 C -0.224 4.224 11 C -0.051 4.051 12 C -0.220 4.220 13 C 0.138 3.862 14 O -0.227 6.227 15 C -0.412 4.412 16 H 0.104 0.896 17 C -0.024 4.024 18 N -0.922 5.922 19 Si 1.019 2.981 20 H -0.247 1.247 21 H -0.269 1.269 22 H -0.272 1.272 23 C -0.266 4.266 24 C 0.106 3.894 25 C -0.164 4.164 26 C 0.115 3.885 27 H 0.077 0.923 28 O -0.574 6.574 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.416 0.584 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.117 0.883 38 H 0.272 0.728 39 H 0.130 0.870 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.996 0.710 -17.140 27.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.118 4.118 3 H 0.100 0.900 4 C 0.016 3.984 5 N -0.354 5.354 6 C 0.404 3.596 7 O -0.482 6.482 8 N -0.318 5.318 9 C 0.108 3.892 10 C -0.245 4.245 11 C -0.070 4.070 12 C -0.240 4.240 13 C 0.087 3.913 14 O -0.134 6.134 15 C -0.488 4.488 16 H 0.121 0.879 17 C -0.221 4.221 18 N -0.560 5.560 19 Si 0.839 3.161 20 H -0.170 1.170 21 H -0.194 1.194 22 H -0.197 1.197 23 C -0.288 4.288 24 C -0.016 4.016 25 C -0.202 4.202 26 C 0.056 3.944 27 H 0.094 0.906 28 O -0.383 6.383 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.256 0.744 35 H 0.173 0.827 36 H 0.169 0.831 37 H 0.135 0.865 38 H 0.081 0.919 39 H 0.148 0.852 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.127 0.873 43 H 0.094 0.906 44 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -22.314 1.114 -15.697 27.305 hybrid contribution 1.272 -0.683 -0.998 1.755 sum -21.042 0.431 -16.695 26.864 Atomic orbital electron populations 1.21649 0.92881 1.02549 1.02377 1.21560 0.97502 0.98976 0.93728 0.90001 1.21513 0.76851 1.01261 0.98778 1.47378 1.06867 1.63109 1.18047 1.15997 0.81049 0.78623 0.83884 1.90736 1.73453 1.55471 1.28562 1.42602 1.04564 1.72875 1.11751 1.17336 0.88822 0.94871 0.88163 1.21698 1.02612 1.05321 0.94850 1.20986 0.91235 0.96593 0.98140 1.20487 0.97161 1.07893 0.98474 1.19512 0.84465 0.93352 0.93955 1.83978 1.21552 1.59753 1.48087 1.21856 0.99855 1.25797 1.01277 0.87917 1.26613 0.94833 0.99272 1.01409 1.70199 1.07825 1.44648 1.33314 0.84521 0.78942 0.76591 0.76082 1.16993 1.19387 1.19689 1.20677 0.94188 1.12274 1.01643 1.21738 0.97670 0.98556 0.83653 1.22582 0.97054 1.02345 0.98239 1.21705 0.91949 0.83433 0.97325 0.90561 1.86501 1.78078 1.22804 1.50894 0.92609 0.91141 0.92126 0.91025 0.90923 0.74436 0.82725 0.83122 0.86459 0.91883 0.85221 0.90105 0.89810 0.87339 0.90614 0.75678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.07 71.98 0.65 -1.01 16 2 C -0.10 -1.39 2.70 -10.72 -0.03 -1.42 16 3 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 4 C 0.14 2.82 5.46 86.36 0.47 3.29 16 5 N -0.62 -13.78 2.98 -837.75 -2.50 -16.27 16 6 C 0.70 21.60 8.20 179.06 1.47 23.06 16 7 O -0.60 -22.65 12.52 -3.98 -0.05 -22.70 16 8 N -0.67 -20.55 5.23 -317.24 -1.66 -22.21 16 9 C 0.20 7.97 6.50 38.13 0.25 8.21 16 10 C -0.22 -8.82 8.90 22.42 0.20 -8.62 16 11 C -0.05 -1.96 10.03 22.23 0.22 -1.73 16 12 C -0.22 -9.91 9.99 22.41 0.22 -9.68 16 13 C 0.14 7.04 6.64 22.56 0.15 7.19 16 14 O -0.23 -13.69 9.76 -22.72 -0.22 -13.91 16 15 C -0.41 -23.64 9.49 67.92 0.64 -23.00 16 16 H 0.10 5.33 5.22 -2.91 -0.02 5.32 16 17 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 18 N -0.92 -56.38 13.67 21.61 0.30 -56.09 16 19 Si 1.02 41.84 29.55 68.60 2.03 43.87 16 20 H -0.25 -9.10 7.11 99.48 0.71 -8.40 16 21 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 22 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 23 C -0.27 -11.77 9.04 22.51 0.20 -11.57 16 24 C 0.11 1.58 6.16 86.22 0.53 2.11 16 25 C -0.16 -1.50 5.79 30.53 0.18 -1.33 16 26 C 0.11 1.12 3.19 30.62 0.10 1.22 16 27 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 28 O -0.57 -5.87 11.43 -148.98 -1.70 -7.57 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.82 7.72 -2.39 -0.02 0.80 16 32 H 0.07 1.49 7.81 -2.38 -0.02 1.47 16 33 H 0.07 1.78 7.05 -2.39 -0.02 1.76 16 34 H 0.42 10.08 6.36 -92.71 -0.59 9.49 16 35 H 0.16 6.10 5.17 -6.46 -0.03 6.07 16 36 H 0.15 4.63 8.06 -2.91 -0.02 4.61 16 37 H 0.12 5.13 8.06 -2.91 -0.02 5.11 16 38 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.13 5.55 5.67 -2.91 -0.02 5.54 16 40 H 0.08 1.14 5.63 -2.39 -0.01 1.12 16 41 H 0.08 1.18 7.81 -2.38 -0.02 1.16 16 42 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 43 H 0.08 0.78 8.14 -2.39 -0.02 0.77 16 44 H 0.39 0.91 9.08 -74.06 -0.67 0.24 16 Total: -1.00 -77.79 353.89 1.69 -76.09 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: -0.23 Total: 32.94 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 5.73 Total: -14.15 kcal Atomic # 7 Polarization: -90.71 SS G_CDS: -3.86 Total: -94.57 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -1.97 Total: -44.18 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -77.79 1.69 -76.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806211619.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.144 kcal (2) G-P(sol) polarization free energy of solvation -77.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds