Wall clock time and date at job start Tue Mar 31 2020 13:44:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09000 * 109.46817 * 2 1
4 4 C 1.50703 * 109.47205 * 240.00418 * 2 1 3
5 5 H 1.07994 * 119.99899 * 239.99681 * 4 2 1
6 6 C 1.37881 * 119.99635 * 59.99976 * 4 2 1
7 7 N 1.31511 * 120.00490 * 0.02562 * 6 4 2
8 8 Si 1.86796 * 119.99646 * 180.02562 * 6 4 2
9 9 H 1.48507 * 109.47462 * 359.97438 * 8 6 4
10 10 H 1.48505 * 109.47468 * 119.99920 * 8 6 4
11 11 H 1.48499 * 109.47146 * 239.99849 * 8 6 4
12 12 N 1.46496 * 109.47349 * 120.00246 * 2 1 3
13 13 C 1.46504 * 119.99656 * 60.00101 * 12 2 1
14 14 C 1.34770 * 120.00442 * 240.00353 * 12 2 1
15 15 O 1.21587 * 119.99867 * 359.97438 * 14 12 2
16 16 N 1.34777 * 120.00338 * 180.02562 * 14 12 2
17 17 C 1.39950 * 120.00052 * 184.58735 * 16 14 12
18 18 C 1.38884 * 120.06792 * 324.90264 * 17 16 14
19 19 C 1.38097 * 119.92858 * 180.02562 * 18 17 16
20 20 C 1.38304 * 120.06852 * 0.02562 * 19 18 17
21 21 C 1.38256 * 120.13962 * 359.97438 * 20 19 18
22 22 C 1.50701 * 119.96281 * 180.02562 * 21 20 19
23 23 O 1.43755 * 109.63352 * 118.90415 * 22 21 20
24 24 C 1.44586 * 104.91600 * 215.70802 * 23 22 21
25 25 C 1.54905 * 101.63699 * 36.27029 * 24 23 22
26 26 O 1.43369 * 109.63287 * 359.68708 * 22 21 20
27 27 C 1.38131 * 120.07353 * 0.02562 * 21 20 19
28 28 H 1.09002 * 109.47617 * 59.99931 * 1 2 3
29 29 H 1.09006 * 109.47094 * 179.97438 * 1 2 3
30 30 H 1.09001 * 109.47533 * 299.99623 * 1 2 3
31 31 H 0.96995 * 120.00426 * 180.02562 * 7 6 4
32 32 H 1.09004 * 109.47093 * 269.99526 * 13 12 2
33 33 H 1.08999 * 109.47122 * 30.00490 * 13 12 2
34 34 H 1.09002 * 109.46820 * 150.00263 * 13 12 2
35 35 H 0.97000 * 119.99676 * 4.57843 * 16 14 12
36 36 H 1.07997 * 120.03861 * 0.04572 * 18 17 16
37 37 H 1.08004 * 119.96333 * 180.28001 * 19 18 17
38 38 H 1.08003 * 119.92622 * 179.97438 * 20 19 18
39 39 H 1.09000 * 109.62604 * 239.29351 * 22 21 20
40 40 H 1.09001 * 111.08746 * 278.15251 * 24 23 22
41 41 H 1.09006 * 110.97548 * 154.33223 * 24 23 22
42 42 H 1.09007 * 110.69470 * 205.95663 * 25 24 23
43 43 H 1.08997 * 110.84647 * 82.82409 * 25 24 23
44 44 H 1.08000 * 120.03839 * 179.97438 * 27 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0323 -0.7103 -1.2305
5 1 2.6532 -1.5883 -1.1315
6 6 1.6992 -0.2391 -2.4828
7 7 0.9435 0.8304 -2.6034
8 14 2.3213 -1.1200 -4.0080
9 1 3.1464 -2.2867 -3.6040
10 1 1.1660 -1.5863 -4.8162
11 1 3.1465 -0.1869 -4.8165
12 7 2.0183 -0.6906 1.1961
13 6 1.6644 -2.0933 1.4278
14 6 2.7931 -0.0358 2.0833
15 8 3.0872 1.1282 1.8908
16 7 3.2428 -0.6713 3.1834
17 6 3.9664 0.0335 4.1521
18 6 4.8293 1.0529 3.7711
19 6 5.5423 1.7461 4.7293
20 6 5.3981 1.4259 6.0670
21 6 4.5399 0.4116 6.4494
22 6 4.3854 0.0663 7.9082
23 8 3.0208 0.2713 8.3112
24 6 3.1033 0.7613 9.6690
25 6 4.3775 1.6401 9.6071
26 8 5.2293 0.9162 8.6963
27 6 3.8239 -0.2856 5.4959
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3634 0.5138 0.8900
31 1 0.7088 1.1617 -3.4843
32 1 0.7376 -2.1445 1.9992
33 1 1.5296 -2.5969 0.4706
34 1 2.4629 -2.5820 1.9861
35 1 3.0648 -1.6172 3.3039
36 1 4.9424 1.3034 2.7267
37 1 6.2101 2.5420 4.4341
38 1 5.9572 1.9692 6.8145
39 1 4.6622 -0.9756 8.0691
40 1 3.2291 -0.0594 10.3752
41 1 2.2281 1.3601 9.9215
42 1 4.8414 1.7158 10.5906
43 1 4.1470 2.6304 9.2143
44 1 3.1539 -1.0781 5.7952
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000808857578.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:44:44
Heat of formation + Delta-G solvation = -70.899730 kcal
Electronic energy + Delta-G solvation = -26813.222400 eV
Core-core repulsion = 22924.657753 eV
Total energy + Delta-G solvation = -3888.564647 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.157 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-40.85808 -40.09994 -38.33661 -35.57346 -35.33667 -34.37509 -32.81342 -31.96314
-30.03757 -29.45164 -28.45105 -26.15211 -25.22069 -25.17123 -23.67155 -22.57166
-22.11066 -20.56958 -19.09850 -17.94321 -17.66831 -17.24298 -16.61680 -16.29308
-15.93519 -15.84654 -15.15947 -15.07672 -14.82535 -14.36572 -14.15990 -13.72159
-13.64313 -13.28343 -13.14943 -13.07237 -12.83521 -12.54520 -12.38111 -11.89718
-11.74444 -11.56990 -11.45039 -11.27385 -11.06105 -10.85184 -10.68868 -10.56788
-10.26672 -10.17871 -10.04103 -9.96592 -9.34150 -9.12095 -8.70224 -8.43764
-7.95492 -7.51997 -6.07864 -4.15813 1.42247 1.51839 3.10238 3.18492
3.25665 3.33997 3.37136 3.63586 3.74494 4.09245 4.21322 4.35331
4.49619 4.54299 4.64624 4.82605 4.95253 5.08421 5.12053 5.23476
5.30230 5.35107 5.48541 5.55233 5.59920 5.71401 5.83499 5.95575
6.03828 6.27073 6.46318 6.52488 6.62983 6.73701 6.78927 6.82380
6.83784 7.03066 7.17388 7.30361 7.46675 7.68247 7.82474 8.06601
8.20766 8.62904 8.85354 9.20739 9.51194 10.97489
Molecular weight = 320.16amu
Principal moments of inertia in cm(-1)
A = 0.028925 B = 0.002558 C = 0.002484
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 967.801852 B =10943.543853 C =11270.350358
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.272 3.728
3 H 0.065 0.935
4 C -0.526 4.526
5 H 0.060 0.940
6 C 0.064 3.936
7 N -0.887 5.887
8 Si 0.899 3.101
9 H -0.274 1.274
10 H -0.283 1.283
11 H -0.283 1.283
12 N -0.603 5.603
13 C 0.084 3.916
14 C 0.697 3.303
15 O -0.579 6.579
16 N -0.696 5.696
17 C 0.176 3.824
18 C -0.110 4.110
19 C -0.107 4.107
20 C -0.115 4.115
21 C -0.103 4.103
22 C 0.281 3.719
23 O -0.369 6.369
24 C 0.015 3.985
25 C 0.020 3.980
26 O -0.378 6.378
27 C -0.128 4.128
28 H 0.094 0.906
29 H 0.029 0.971
30 H 0.011 0.989
31 H 0.263 0.737
32 H 0.044 0.956
33 H 0.085 0.915
34 H 0.046 0.954
35 H 0.402 0.598
36 H 0.146 0.854
37 H 0.125 0.875
38 H 0.127 0.873
39 H 0.095 0.905
40 H 0.076 0.924
41 H 0.109 0.891
42 H 0.100 0.900
43 H 0.078 0.922
44 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.375 -3.272 23.338 24.171
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C 0.172 3.828
3 H 0.083 0.917
4 C -0.565 4.565
5 H 0.078 0.922
6 C -0.138 4.138
7 N -0.525 5.525
8 Si 0.727 3.273
9 H -0.199 1.199
10 H -0.209 1.209
11 H -0.209 1.209
12 N -0.338 5.338
13 C -0.060 4.060
14 C 0.399 3.601
15 O -0.457 6.457
16 N -0.345 5.345
17 C 0.080 3.920
18 C -0.131 4.131
19 C -0.125 4.125
20 C -0.134 4.134
21 C -0.104 4.104
22 C 0.186 3.814
23 O -0.289 6.289
24 C -0.061 4.061
25 C -0.057 4.057
26 O -0.299 6.299
27 C -0.150 4.150
28 H 0.113 0.887
29 H 0.048 0.952
30 H 0.030 0.970
31 H 0.073 0.927
32 H 0.062 0.938
33 H 0.104 0.896
34 H 0.064 0.936
35 H 0.239 0.761
36 H 0.163 0.837
37 H 0.143 0.857
38 H 0.144 0.856
39 H 0.113 0.887
40 H 0.095 0.905
41 H 0.127 0.873
42 H 0.118 0.882
43 H 0.096 0.904
44 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges 5.435 -2.362 22.768 23.527
hybrid contribution 0.013 -1.039 -0.682 1.243
sum 5.448 -3.401 22.086 23.001
Atomic orbital electron populations
1.22099 0.98171 0.99400 1.00851 1.18906 0.90704 0.94356 0.78871
0.91694 1.21364 1.31772 1.13049 0.90269 0.92199 1.24890 0.94957
0.94990 0.98959 1.69887 1.36366 1.22571 1.23688 0.86433 0.78572
0.79567 0.82752 1.19852 1.20945 1.20904 1.47610 1.50853 1.11526
1.23777 1.21552 0.98325 0.83491 1.02642 1.15982 0.79603 0.84948
0.79573 1.90859 1.62676 1.15575 1.76543 1.42945 1.57719 1.12683
1.21170 1.17469 0.92369 0.94888 0.87314 1.21550 0.93913 0.95877
1.01725 1.21059 0.99455 0.99596 0.92432 1.20850 0.99354 0.97095
0.96106 1.19559 0.99522 0.98310 0.93046 1.22622 0.76319 0.94139
0.88279 1.89302 1.24961 1.86416 1.28234 1.24367 0.99539 0.97498
0.84712 1.24211 0.90379 0.96519 0.94551 1.88878 1.31588 1.57957
1.51458 1.20497 1.01203 1.02682 0.90587 0.88746 0.95178 0.96970
0.92704 0.93791 0.89600 0.93559 0.76097 0.83659 0.85711 0.85557
0.88745 0.90541 0.87263 0.88157 0.90403 0.85839
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.53 8.97 37.15 0.33 -3.20 16
2 C 0.27 6.97 2.64 -69.09 -0.18 6.79 16
3 H 0.07 1.94 6.90 -51.93 -0.36 1.58 16
4 C -0.53 -14.13 7.99 -34.44 -0.28 -14.41 16
5 H 0.06 1.58 7.33 -52.49 -0.38 1.20 16
6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16
7 N -0.89 -25.07 11.32 55.43 0.63 -24.45 16
8 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16
9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16
10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
12 N -0.60 -13.00 2.75 -181.01 -0.50 -13.50 16
13 C 0.08 1.39 9.24 59.85 0.55 1.94 16
14 C 0.70 15.00 8.13 -86.92 -0.71 14.30 16
15 O -0.58 -14.59 13.10 5.29 0.07 -14.52 16
16 N -0.70 -11.70 5.22 -14.22 -0.07 -11.77 16
17 C 0.18 2.88 6.30 -83.69 -0.53 2.35 16
18 C -0.11 -1.88 8.70 -39.39 -0.34 -2.22 16
19 C -0.11 -1.52 10.04 -39.61 -0.40 -1.92 16
20 C -0.12 -1.52 9.38 -39.55 -0.37 -1.89 16
21 C -0.10 -1.36 5.56 -104.65 -0.58 -1.94 16
22 C 0.28 3.09 4.31 36.01 0.16 3.24 16
23 O -0.37 -4.14 11.22 -59.05 -0.66 -4.80 16
24 C 0.02 0.11 7.95 38.16 0.30 0.41 16
25 C 0.02 0.14 8.07 38.16 0.31 0.45 16
26 O -0.38 -3.90 9.70 -59.05 -0.57 -4.48 16
27 C -0.13 -1.79 9.55 -39.40 -0.38 -2.17 16
28 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16
29 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16
30 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16
31 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16
32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16
33 H 0.09 1.50 7.02 -51.93 -0.36 1.14 16
34 H 0.05 0.61 6.30 -51.93 -0.33 0.28 16
35 H 0.40 5.43 6.52 -40.82 -0.27 5.17 16
36 H 0.15 2.83 6.22 -52.49 -0.33 2.51 16
37 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16
38 H 0.13 1.48 7.00 -52.48 -0.37 1.12 16
39 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16
40 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16
41 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16
42 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16
43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16
44 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16
LS Contribution 358.75 15.07 5.41 5.41
Total: -1.00 -32.96 358.75 -8.98 -41.93
By element:
Atomic # 1 Polarization: 12.87 SS G_CDS: -6.05 Total: 6.82 kcal
Atomic # 6 Polarization: 5.59 SS G_CDS: -2.20 Total: 3.39 kcal
Atomic # 7 Polarization: -49.77 SS G_CDS: 0.06 Total: -49.72 kcal
Atomic # 8 Polarization: -22.63 SS G_CDS: -1.17 Total: -23.80 kcal
Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal
Total LS contribution 5.41 Total: 5.41 kcal
Total: -32.96 -8.98 -41.93 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000808857578.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.968 kcal
(2) G-P(sol) polarization free energy of solvation -32.956 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.924 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.900 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds