Wall clock time and date at job start Tue Mar 31 2020 13:44:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09000 * 109.46817 * 2 1
4 4 C 1.50703 * 109.47205 * 240.00418 * 2 1 3
5 5 H 1.07994 * 119.99899 * 239.99681 * 4 2 1
6 6 C 1.37881 * 119.99635 * 59.99976 * 4 2 1
7 7 N 1.31511 * 120.00490 * 0.02562 * 6 4 2
8 8 Si 1.86796 * 119.99646 * 180.02562 * 6 4 2
9 9 H 1.48507 * 109.47462 * 359.97438 * 8 6 4
10 10 H 1.48505 * 109.47468 * 119.99920 * 8 6 4
11 11 H 1.48499 * 109.47146 * 239.99849 * 8 6 4
12 12 N 1.46496 * 109.47349 * 120.00246 * 2 1 3
13 13 C 1.46504 * 119.99656 * 60.00101 * 12 2 1
14 14 C 1.34770 * 120.00442 * 240.00353 * 12 2 1
15 15 O 1.21587 * 119.99867 * 359.97438 * 14 12 2
16 16 N 1.34777 * 120.00338 * 180.02562 * 14 12 2
17 17 C 1.39950 * 120.00052 * 184.58735 * 16 14 12
18 18 C 1.38884 * 120.06792 * 324.90264 * 17 16 14
19 19 C 1.38097 * 119.92858 * 180.02562 * 18 17 16
20 20 C 1.38304 * 120.06852 * 0.02562 * 19 18 17
21 21 C 1.38256 * 120.13962 * 359.97438 * 20 19 18
22 22 C 1.50701 * 119.96281 * 180.02562 * 21 20 19
23 23 O 1.43755 * 109.63352 * 118.90415 * 22 21 20
24 24 C 1.44586 * 104.91600 * 215.70802 * 23 22 21
25 25 C 1.54905 * 101.63699 * 36.27029 * 24 23 22
26 26 O 1.43369 * 109.63287 * 359.68708 * 22 21 20
27 27 C 1.38131 * 120.07353 * 0.02562 * 21 20 19
28 28 H 1.09002 * 109.47617 * 59.99931 * 1 2 3
29 29 H 1.09006 * 109.47094 * 179.97438 * 1 2 3
30 30 H 1.09001 * 109.47533 * 299.99623 * 1 2 3
31 31 H 0.96995 * 120.00426 * 180.02562 * 7 6 4
32 32 H 1.09004 * 109.47093 * 269.99526 * 13 12 2
33 33 H 1.08999 * 109.47122 * 30.00490 * 13 12 2
34 34 H 1.09002 * 109.46820 * 150.00263 * 13 12 2
35 35 H 0.97000 * 119.99676 * 4.57843 * 16 14 12
36 36 H 1.07997 * 120.03861 * 0.04572 * 18 17 16
37 37 H 1.08004 * 119.96333 * 180.28001 * 19 18 17
38 38 H 1.08003 * 119.92622 * 179.97438 * 20 19 18
39 39 H 1.09000 * 109.62604 * 239.29351 * 22 21 20
40 40 H 1.09001 * 111.08746 * 278.15251 * 24 23 22
41 41 H 1.09006 * 110.97548 * 154.33223 * 24 23 22
42 42 H 1.09007 * 110.69470 * 205.95663 * 25 24 23
43 43 H 1.08997 * 110.84647 * 82.82409 * 25 24 23
44 44 H 1.08000 * 120.03839 * 179.97438 * 27 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8932 1.0277 0.0000
4 6 2.0323 -0.7103 -1.2305
5 1 2.6532 -1.5883 -1.1315
6 6 1.6992 -0.2391 -2.4828
7 7 0.9435 0.8304 -2.6034
8 14 2.3213 -1.1200 -4.0080
9 1 3.1464 -2.2867 -3.6040
10 1 1.1660 -1.5863 -4.8162
11 1 3.1465 -0.1869 -4.8165
12 7 2.0183 -0.6906 1.1961
13 6 1.6644 -2.0933 1.4278
14 6 2.7931 -0.0358 2.0833
15 8 3.0872 1.1282 1.8908
16 7 3.2428 -0.6713 3.1834
17 6 3.9664 0.0335 4.1521
18 6 4.8293 1.0529 3.7711
19 6 5.5423 1.7461 4.7293
20 6 5.3981 1.4259 6.0670
21 6 4.5399 0.4116 6.4494
22 6 4.3854 0.0663 7.9082
23 8 3.0208 0.2713 8.3112
24 6 3.1033 0.7613 9.6690
25 6 4.3775 1.6401 9.6071
26 8 5.2293 0.9162 8.6963
27 6 3.8239 -0.2856 5.4959
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3634 0.5138 0.8900
31 1 0.7088 1.1617 -3.4843
32 1 0.7376 -2.1445 1.9992
33 1 1.5296 -2.5969 0.4706
34 1 2.4629 -2.5820 1.9861
35 1 3.0648 -1.6172 3.3039
36 1 4.9424 1.3034 2.7267
37 1 6.2101 2.5420 4.4341
38 1 5.9572 1.9692 6.8145
39 1 4.6622 -0.9756 8.0691
40 1 3.2291 -0.0594 10.3752
41 1 2.2281 1.3601 9.9215
42 1 4.8414 1.7158 10.5906
43 1 4.1470 2.6304 9.2143
44 1 3.1539 -1.0781 5.7952
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000808857578.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:44:43
Heat of formation + Delta-G solvation = -92.196117 kcal
Electronic energy + Delta-G solvation = -26814.145880 eV
Core-core repulsion = 22924.657753 eV
Total energy + Delta-G solvation = -3889.488128 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.157 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-41.85304 -41.34596 -39.60837 -37.29713 -36.09777 -35.87179 -34.69742 -32.96175
-31.64381 -30.43256 -29.74955 -27.64385 -27.30237 -26.08374 -24.40640 -23.89802
-23.28405 -22.05586 -20.65195 -19.34719 -18.66431 -18.37547 -18.10735 -17.47248
-17.24647 -16.86104 -16.64788 -16.47580 -16.08198 -15.64463 -15.45141 -14.89910
-14.71991 -14.52273 -14.39907 -14.17095 -14.13388 -13.74227 -13.64716 -13.54773
-13.15285 -12.95200 -12.74860 -12.71832 -12.62371 -12.42792 -12.31311 -12.19436
-12.09879 -11.39056 -11.21836 -11.15778 -10.96402 -10.77051 -10.52880 -9.83692
-9.50211 -8.98918 -8.14505 -6.31012 0.28053 0.35789 1.41032 1.42755
1.53724 1.70605 2.11703 2.41601 2.48291 2.77832 2.98873 3.09280
3.13676 3.67661 3.79179 3.96531 4.10267 4.19387 4.27177 4.30236
4.33699 4.41688 4.52206 4.59697 4.66983 4.68040 4.73172 4.81120
4.89091 4.91075 4.96955 5.02760 5.05664 5.28158 5.40658 5.45006
5.51648 5.55952 5.57175 5.66830 5.95988 6.06466 6.06840 6.14830
6.23388 6.76650 7.05273 7.36001 7.60248 8.90130
Molecular weight = 320.16amu
Principal moments of inertia in cm(-1)
A = 0.028925 B = 0.002558 C = 0.002484
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 967.801852 B =10943.543853 C =11270.350358
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C 0.278 3.722
3 H 0.010 0.990
4 C -0.536 4.536
5 H 0.062 0.938
6 C 0.015 3.985
7 N -0.918 5.918
8 Si 0.966 3.034
9 H -0.265 1.265
10 H -0.274 1.274
11 H -0.286 1.286
12 N -0.611 5.611
13 C 0.079 3.921
14 C 0.691 3.309
15 O -0.626 6.626
16 N -0.676 5.676
17 C 0.152 3.848
18 C -0.138 4.138
19 C -0.108 4.108
20 C -0.109 4.109
21 C -0.104 4.104
22 C 0.284 3.716
23 O -0.394 6.394
24 C 0.012 3.988
25 C 0.014 3.986
26 O -0.391 6.391
27 C -0.119 4.119
28 H 0.069 0.931
29 H 0.048 0.952
30 H 0.017 0.983
31 H 0.265 0.735
32 H 0.067 0.933
33 H 0.077 0.923
34 H 0.082 0.918
35 H 0.419 0.581
36 H 0.110 0.890
37 H 0.141 0.859
38 H 0.145 0.855
39 H 0.114 0.886
40 H 0.097 0.903
41 H 0.125 0.875
42 H 0.129 0.871
43 H 0.074 0.926
44 H 0.146 0.854
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.666 -5.246 25.824 26.954
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.175 3.825
3 H 0.028 0.972
4 C -0.575 4.575
5 H 0.080 0.920
6 C -0.185 4.185
7 N -0.557 5.557
8 Si 0.792 3.208
9 H -0.189 1.189
10 H -0.199 1.199
11 H -0.213 1.213
12 N -0.345 5.345
13 C -0.063 4.063
14 C 0.393 3.607
15 O -0.507 6.507
16 N -0.327 5.327
17 C 0.057 3.943
18 C -0.158 4.158
19 C -0.126 4.126
20 C -0.128 4.128
21 C -0.105 4.105
22 C 0.189 3.811
23 O -0.315 6.315
24 C -0.064 4.064
25 C -0.062 4.062
26 O -0.313 6.313
27 C -0.140 4.140
28 H 0.088 0.912
29 H 0.067 0.933
30 H 0.036 0.964
31 H 0.074 0.926
32 H 0.085 0.915
33 H 0.095 0.905
34 H 0.101 0.899
35 H 0.259 0.741
36 H 0.128 0.872
37 H 0.159 0.841
38 H 0.163 0.837
39 H 0.131 0.869
40 H 0.115 0.885
41 H 0.143 0.857
42 H 0.147 0.853
43 H 0.093 0.907
44 H 0.164 0.836
Dipole moment (debyes) X Y Z Total
from point charges 5.730 -4.393 25.316 26.325
hybrid contribution -0.040 -0.349 -1.285 1.332
sum 5.689 -4.742 24.030 25.146
Atomic orbital electron populations
1.21882 0.97066 1.00207 0.99868 1.18482 0.91446 0.92006 0.80522
0.97205 1.21601 1.31816 1.13086 0.91005 0.91990 1.25737 0.95093
0.95653 1.02020 1.70028 1.37351 1.23881 1.24409 0.85384 0.78189
0.78439 0.78832 1.18904 1.19916 1.21258 1.47473 1.50912 1.13374
1.22727 1.21819 1.00830 0.80547 1.03130 1.16165 0.79512 0.84537
0.80500 1.90831 1.64212 1.17900 1.77780 1.42582 1.56981 1.13299
1.19814 1.17670 0.92961 0.95521 0.88174 1.21416 0.96090 0.97677
1.00664 1.21236 0.99187 0.99593 0.92596 1.21081 0.99075 0.96947
0.95713 1.19991 0.98397 0.97429 0.94722 1.22641 0.76677 0.95117
0.86706 1.89268 1.24914 1.86750 1.30532 1.24650 1.00140 0.98354
0.83251 1.24452 0.90418 0.96009 0.95274 1.88864 1.32235 1.58263
1.51889 1.20662 1.01141 1.02945 0.89282 0.91221 0.93269 0.96391
0.92612 0.91500 0.90470 0.89920 0.74090 0.87168 0.84089 0.83744
0.86868 0.88475 0.85747 0.85301 0.90725 0.83636
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -6.46 8.97 71.98 0.65 -5.82 16
2 C 0.28 14.75 2.64 44.24 0.12 14.86 16
3 H 0.01 0.63 6.90 -2.39 -0.02 0.62 16
4 C -0.54 -29.35 7.99 25.60 0.20 -29.14 16
5 H 0.06 3.29 7.33 -2.91 -0.02 3.27 16
6 C 0.01 0.80 5.30 84.66 0.45 1.25 16
7 N -0.92 -53.34 11.32 21.45 0.24 -53.10 16
8 Si 0.97 43.30 29.54 68.60 2.03 45.32 16
9 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16
10 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16
11 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16
12 N -0.61 -26.63 2.75 -844.85 -2.33 -28.95 16
13 C 0.08 2.48 9.24 127.77 1.18 3.66 16
14 C 0.69 30.62 8.13 179.06 1.46 32.07 16
15 O -0.63 -33.59 13.10 -3.99 -0.05 -33.64 16
16 N -0.68 -22.58 5.22 -317.18 -1.65 -24.23 16
17 C 0.15 4.98 6.30 38.15 0.24 5.22 16
18 C -0.14 -4.90 8.70 22.39 0.19 -4.70 16
19 C -0.11 -3.08 10.04 22.25 0.22 -2.86 16
20 C -0.11 -2.74 9.38 22.29 0.21 -2.53 16
21 C -0.10 -2.55 5.56 -19.89 -0.11 -2.66 16
22 C 0.28 5.43 4.31 71.24 0.31 5.74 16
23 O -0.39 -7.76 11.22 -126.21 -1.42 -9.18 16
24 C 0.01 0.12 7.95 72.63 0.58 0.70 16
25 C 0.01 0.16 8.07 72.63 0.59 0.74 16
26 O -0.39 -6.95 9.70 -126.21 -1.22 -8.18 16
27 C -0.12 -3.14 9.55 22.39 0.21 -2.93 16
28 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16
29 H 0.05 2.17 7.67 -2.38 -0.02 2.15 16
30 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16
31 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16
32 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16
33 H 0.08 2.58 7.02 -2.39 -0.02 2.56 16
34 H 0.08 1.95 6.30 -2.39 -0.02 1.94 16
35 H 0.42 10.58 6.52 -92.71 -0.60 9.97 16
36 H 0.11 4.69 6.22 -2.91 -0.02 4.67 16
37 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16
38 H 0.14 3.08 7.00 -2.91 -0.02 3.06 16
39 H 0.11 1.75 8.14 -2.39 -0.02 1.74 16
40 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16
41 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16
42 H 0.13 0.67 8.14 -2.38 -0.02 0.65 16
43 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16
44 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16
Total: -1.00 -75.24 358.75 2.51 -72.73
By element:
Atomic # 1 Polarization: 25.18 SS G_CDS: 0.42 Total: 25.60 kcal
Atomic # 6 Polarization: 7.12 SS G_CDS: 6.49 Total: 13.62 kcal
Atomic # 7 Polarization: -102.54 SS G_CDS: -3.74 Total: -106.28 kcal
Atomic # 8 Polarization: -48.31 SS G_CDS: -2.69 Total: -51.00 kcal
Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal
Total: -75.24 2.51 -72.73 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000808857578.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.463 kcal
(2) G-P(sol) polarization free energy of solvation -75.244 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.707 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.733 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.196 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds