Wall clock time and date at job start Tue Mar 31 2020 13:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47310 * 2 1 4 4 C 1.50697 * 109.46680 * 120.00665 * 2 1 3 5 5 O 1.20826 * 120.00266 * 359.97438 * 4 2 1 6 6 O 1.34237 * 119.99580 * 180.02562 * 4 2 1 7 7 C 1.53002 * 109.46807 * 240.00135 * 2 1 3 8 8 H 1.08998 * 109.47617 * 294.08721 * 7 2 1 9 9 N 1.46898 * 109.47329 * 54.09587 * 7 2 1 10 10 C 1.46903 * 111.00232 * 208.73382 * 9 7 2 11 11 C 1.50691 * 109.47036 * 174.89199 * 10 9 7 12 12 O 1.21279 * 120.00676 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99925 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00178 * 180.02562 * 13 11 10 15 15 C 1.50704 * 109.47015 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99986 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99816 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00436 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99980 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47058 * 59.99985 * 19 17 15 21 21 H 1.48493 * 109.47572 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47011 * 300.00549 * 19 17 15 23 23 C 1.50700 * 109.46684 * 174.08970 * 7 2 1 24 24 C 1.38239 * 120.00438 * 279.72764 * 23 7 2 25 25 C 1.38229 * 120.00375 * 179.78986 * 24 23 7 26 26 C 1.38242 * 119.99863 * 0.44089 * 25 24 23 27 27 C 1.38238 * 119.99859 * 359.81173 * 26 25 24 28 28 C 1.38234 * 119.99979 * 100.00339 * 23 7 2 29 29 H 1.09000 * 109.47339 * 184.80008 * 1 2 3 30 30 H 1.08994 * 109.46879 * 304.80218 * 1 2 3 31 31 H 1.09008 * 109.46962 * 64.79690 * 1 2 3 32 32 H 0.96705 * 116.99373 * 179.97438 * 6 4 2 33 33 H 1.00897 * 111.00731 * 84.77393 * 9 7 2 34 34 H 1.09003 * 109.46475 * 294.89204 * 10 9 7 35 35 H 1.09003 * 109.47071 * 54.88577 * 10 9 7 36 36 H 0.97004 * 119.99824 * 359.97438 * 13 11 10 37 37 H 1.08996 * 109.46963 * 299.99604 * 14 13 11 38 38 H 1.08994 * 109.47133 * 60.00101 * 14 13 11 39 39 H 0.96994 * 120.00163 * 179.97438 * 18 17 15 40 40 H 1.07999 * 119.99282 * 359.97438 * 24 23 7 41 41 H 1.07998 * 120.00235 * 180.27605 * 25 24 23 42 42 H 1.07995 * 119.99959 * 179.83464 * 26 25 24 43 43 H 1.07995 * 119.99743 * 179.97438 * 27 26 25 44 44 H 1.08001 * 120.00174 * 359.97438 * 28 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7106 1.2304 5 8 1.2470 -1.1694 2.0259 6 8 3.3520 -0.8328 1.4431 7 6 2.0400 -0.7212 -1.2493 8 1 1.7657 -1.7749 -1.1980 9 7 1.4374 -0.1159 -2.4445 10 6 1.3175 -1.0993 -3.5292 11 6 0.5841 -0.4792 -4.6904 12 8 0.1987 0.6686 -4.6212 13 7 0.3563 -1.2003 -5.8061 14 6 -0.3562 -0.5974 -6.9353 15 6 -0.4782 -1.6059 -8.0485 16 1 -0.0666 -2.5970 -7.9268 17 6 -1.1163 -1.2637 -9.2218 18 7 -1.6180 -0.0571 -9.3698 19 14 -1.2682 -2.5139 -10.6014 20 1 -2.0213 -3.6980 -10.1156 21 1 -1.9903 -1.9029 -11.7460 22 1 0.0870 -2.9349 -11.0394 23 6 3.5398 -0.5958 -1.3246 24 6 4.1130 0.5650 -1.8094 25 6 5.4888 0.6818 -1.8744 26 6 6.2915 -0.3658 -1.4631 27 6 5.7184 -1.5287 -0.9832 28 6 4.3425 -1.6437 -0.9142 29 1 -0.3634 -1.0240 0.0860 30 1 -0.3633 0.5865 0.8438 31 1 -0.3633 0.4376 -0.9299 32 1 3.6261 -1.2963 2.2463 33 1 1.9626 0.6915 -2.7448 34 1 2.3120 -1.4084 -3.8508 35 1 0.7646 -1.9682 -3.1723 36 1 0.6648 -2.1183 -5.8617 37 1 -1.3508 -0.2883 -6.6140 38 1 0.1969 0.2714 -7.2917 39 1 -2.0665 0.1838 -10.1954 40 1 3.4857 1.3818 -2.1346 41 1 5.9365 1.5904 -2.2490 42 1 7.3664 -0.2757 -1.5164 43 1 6.3455 -2.3472 -0.6623 44 1 3.8948 -2.5522 -0.5392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826055207.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:38 Heat of formation + Delta-G solvation = -103.860196 kcal Electronic energy + Delta-G solvation = -26685.670447 eV Core-core repulsion = 22795.676527 eV Total energy + Delta-G solvation = -3889.993920 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.89970 -39.59843 -38.72292 -36.77008 -36.27108 -34.17315 -32.93388 -32.29551 -31.18039 -31.01460 -28.06325 -26.53708 -25.54479 -23.89534 -22.82924 -22.21421 -21.53125 -20.28258 -19.67209 -18.34774 -17.61830 -17.15566 -16.90658 -16.15975 -15.83004 -15.63677 -15.19712 -15.07144 -14.89426 -14.45204 -14.10808 -13.99395 -13.71487 -13.54617 -13.37056 -13.04825 -12.74553 -12.48483 -12.30527 -12.23663 -11.92955 -11.80002 -11.68472 -11.54566 -11.36710 -11.12868 -11.09486 -11.00218 -10.86274 -10.69078 -10.32286 -9.41582 -9.11369 -9.06720 -8.94091 -8.73309 -8.50631 -7.87230 -6.16808 -4.23899 1.13661 1.24299 1.97019 2.82461 3.24893 3.29822 3.31161 3.37658 3.58945 3.72299 4.24164 4.30642 4.46901 4.61852 4.75084 4.82488 4.85224 4.89154 4.95569 5.19129 5.21774 5.29538 5.34785 5.40860 5.41843 5.48432 5.59309 5.75958 5.82689 5.85106 5.96350 6.20526 6.26619 6.28381 6.34083 6.39732 6.75160 6.80899 7.21095 7.31638 7.44046 7.52123 7.66562 7.69139 7.97122 8.62840 8.78168 9.10904 9.42835 10.93329 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016630 B = 0.002698 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.286810 B =10375.823934 C =11273.085704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.066 4.066 3 H 0.109 0.891 4 C 0.482 3.518 5 O -0.515 6.515 6 O -0.505 6.505 7 C 0.137 3.863 8 H 0.090 0.910 9 N -0.656 5.656 10 C 0.040 3.960 11 C 0.498 3.502 12 O -0.542 6.542 13 N -0.714 5.714 14 C 0.252 3.748 15 C -0.544 4.544 16 H 0.062 0.938 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.112 4.112 24 C -0.113 4.113 25 C -0.117 4.117 26 C -0.119 4.119 27 C -0.120 4.120 28 C -0.085 4.085 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.402 0.598 33 H 0.355 0.645 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.390 0.610 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.266 0.734 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.019 -2.741 20.633 25.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.086 4.086 3 H 0.127 0.873 4 C 0.324 3.676 5 O -0.403 6.403 6 O -0.316 6.316 7 C 0.026 3.974 8 H 0.108 0.892 9 N -0.289 5.289 10 C -0.093 4.093 11 C 0.282 3.718 12 O -0.420 6.420 13 N -0.363 5.363 14 C 0.131 3.869 15 C -0.583 4.583 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.114 4.114 24 C -0.131 4.131 25 C -0.135 4.135 26 C -0.137 4.137 27 C -0.138 4.138 28 C -0.104 4.104 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.260 0.740 33 H 0.177 0.823 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.222 0.778 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.603 -1.770 20.564 24.719 hybrid contribution 1.259 -1.481 -0.536 2.016 sum 14.861 -3.251 20.028 25.150 Atomic orbital electron populations 1.21665 0.90422 1.03121 1.03696 1.21075 0.98680 1.00314 0.88491 0.87325 1.23588 0.79920 0.76623 0.87485 1.90717 1.57055 1.45736 1.46796 1.84746 1.26107 1.72961 1.47765 1.20412 0.87667 0.99009 0.90289 0.89156 1.60194 1.55676 1.08774 1.04240 1.21890 0.99993 0.95846 0.91547 1.20276 0.80923 0.86971 0.83657 1.90665 1.52010 1.17711 1.81634 1.46447 1.57698 1.15966 1.16239 1.19077 0.91965 0.94082 0.81780 1.21196 1.38538 0.98785 0.99755 0.91982 1.24948 0.94960 0.95578 0.98499 1.69961 1.36627 1.18764 1.26923 0.86480 0.78327 0.81054 0.81073 1.20054 1.21067 1.20093 1.20497 0.96114 0.94825 0.99921 1.20949 0.95226 0.97322 0.99603 1.21091 0.93572 0.98928 0.99897 1.21139 0.99671 0.93770 0.99164 1.21071 0.94856 0.97788 1.00122 1.20839 0.93479 0.97889 0.98201 0.92166 0.92531 0.88650 0.74020 0.82299 0.92462 0.88424 0.77818 0.95508 0.95625 0.92381 0.85888 0.86098 0.86378 0.86370 0.86705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 8.40 37.16 0.31 -1.11 16 2 C -0.07 -0.63 2.59 -91.77 -0.24 -0.87 16 3 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.48 4.75 7.59 36.00 0.27 5.02 16 5 O -0.52 -6.61 16.68 -18.75 -0.31 -6.92 16 6 O -0.51 -3.74 10.27 -39.27 -0.40 -4.14 16 7 C 0.14 1.33 1.82 -68.86 -0.13 1.21 16 8 H 0.09 0.86 7.52 -51.93 -0.39 0.47 16 9 N -0.66 -7.92 4.69 -109.22 -0.51 -8.44 16 10 C 0.04 0.52 6.01 -4.98 -0.03 0.49 16 11 C 0.50 9.44 7.88 -10.99 -0.09 9.35 16 12 O -0.54 -12.49 16.31 5.56 0.09 -12.40 16 13 N -0.71 -14.57 5.55 -61.48 -0.34 -14.92 16 14 C 0.25 6.59 5.43 -5.19 -0.03 6.56 16 15 C -0.54 -14.65 9.28 -34.44 -0.32 -14.97 16 16 H 0.06 1.55 7.60 -52.48 -0.40 1.16 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 19 Si 0.90 20.73 29.54 -169.99 -5.02 15.70 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 C -0.11 -1.05 3.96 -104.62 -0.41 -1.46 16 24 C -0.11 -1.08 9.07 -39.58 -0.36 -1.44 16 25 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 26 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 27 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 28 C -0.09 -0.74 7.57 -39.58 -0.30 -1.04 16 29 H 0.06 0.68 7.96 -51.93 -0.41 0.27 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 1.14 7.29 -51.92 -0.38 0.77 16 32 H 0.40 1.48 9.10 45.56 0.41 1.90 16 33 H 0.35 4.42 6.14 -39.29 -0.24 4.18 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.10 1.12 7.92 -51.93 -0.41 0.71 16 36 H 0.39 6.77 8.32 -40.82 -0.34 6.43 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.12 1.14 6.52 -52.49 -0.34 0.79 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 42 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 43 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 44 H 0.11 0.86 8.04 -52.49 -0.42 0.44 16 LS Contribution 372.46 15.07 5.61 5.61 Total: -1.00 -34.11 372.46 -8.20 -42.31 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -5.44 Total: 9.25 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -2.61 Total: -0.81 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.12 Total: -48.59 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.63 Total: -23.46 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.11 -8.20 -42.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826055207.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.554 kcal (2) G-P(sol) polarization free energy of solvation -34.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds