Wall clock time and date at job start Tue Mar 31 2020 13:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47231 * 2 1 4 4 N 1.46505 * 109.47137 * 240.00305 * 2 1 3 5 5 C 1.34779 * 120.00036 * 84.99797 * 4 2 1 6 6 O 1.21276 * 119.99873 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99967 * 179.97438 * 5 4 2 8 8 C 1.52994 * 109.46866 * 179.97438 * 7 5 4 9 9 C 1.53009 * 109.46979 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47176 * 180.02562 * 9 8 7 11 11 C 1.50695 * 109.47018 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00017 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99942 * 179.97438 * 11 10 9 14 14 N 1.31523 * 120.00084 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 119.99978 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.47206 * 90.00202 * 15 13 11 17 17 H 1.48504 * 109.46772 * 210.00008 * 15 13 11 18 18 H 1.48501 * 109.46967 * 329.99590 * 15 13 11 19 19 C 1.50697 * 109.47134 * 120.00429 * 2 1 3 20 20 C 1.38238 * 120.00163 * 80.21338 * 19 2 1 21 21 C 1.38233 * 119.99742 * 180.21780 * 20 19 2 22 22 C 1.38234 * 120.00037 * 359.52139 * 21 20 19 23 23 N 1.48025 * 119.99960 * 180.26108 * 22 21 20 24 24 O 1.21793 * 119.99912 * 359.97438 * 23 22 21 25 25 O 1.21799 * 119.99930 * 180.02562 * 23 22 21 26 26 C 1.38235 * 120.00220 * 0.28719 * 22 21 20 27 27 C 1.38234 * 119.99706 * 259.99566 * 19 2 1 28 28 H 1.09006 * 109.47225 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47442 * 299.99980 * 1 2 3 30 30 H 1.09006 * 109.47600 * 59.99884 * 1 2 3 31 31 H 0.97002 * 119.99844 * 265.00322 * 4 2 1 32 32 H 1.08998 * 109.47200 * 300.00169 * 7 5 4 33 33 H 1.09003 * 109.46827 * 60.00010 * 7 5 4 34 34 H 1.08998 * 109.47393 * 300.00105 * 8 7 5 35 35 H 1.09003 * 109.47346 * 60.00380 * 8 7 5 36 36 H 1.08998 * 109.47072 * 300.00213 * 9 8 7 37 37 H 1.09003 * 109.46843 * 59.99985 * 9 8 7 38 38 H 1.09005 * 109.46716 * 299.99955 * 10 9 8 39 39 H 1.08998 * 109.47420 * 59.99600 * 10 9 8 40 40 H 0.96995 * 119.99972 * 180.02562 * 14 13 11 41 41 H 1.07998 * 119.99831 * 0.02562 * 20 19 2 42 42 H 1.08002 * 120.00157 * 179.80757 * 21 20 19 43 43 H 1.08005 * 120.00199 * 179.97438 * 26 22 21 44 44 H 1.08001 * 120.00324 * 0.02562 * 27 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8590 1.1587 -2.4115 7 6 2.6499 -0.7284 -3.5876 8 6 2.7005 0.2546 -4.7589 9 6 3.2105 -0.4666 -6.0082 10 6 3.2618 0.5165 -7.1794 11 6 3.7635 -0.1940 -8.4100 12 1 4.0205 -1.2418 -8.3615 13 6 3.8944 0.4937 -9.5979 14 7 4.3328 -0.1263 -10.6718 15 14 3.4493 2.3059 -9.6819 16 1 4.6462 3.1249 -9.3631 17 1 2.9736 2.6358 -11.0495 18 1 2.3740 2.5975 -8.7001 19 6 2.0323 -0.7105 1.2304 20 6 2.0708 -2.0919 1.2635 21 6 2.5274 -2.7436 2.3939 22 6 2.9547 -2.0138 3.4873 23 7 3.4490 -2.7116 4.6956 24 8 3.4788 -3.9288 4.7264 25 8 3.8251 -2.0686 5.6592 26 6 2.9199 -0.6323 3.4527 27 6 2.4587 0.0193 2.3242 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 2.2489 -1.6318 -1.1527 32 1 3.6492 -1.1202 -3.3980 33 1 1.9777 -1.5507 -3.8326 34 1 1.7011 0.6460 -4.9483 35 1 3.3725 1.0772 -4.5141 36 1 4.2099 -0.8584 -5.8191 37 1 2.5382 -1.2890 -6.2528 38 1 2.2625 0.9086 -7.3686 39 1 3.9343 1.3386 -6.9345 40 1 4.4252 0.3576 -11.5073 41 1 1.7413 -2.6620 0.4075 42 1 2.5546 -3.8230 2.4210 43 1 3.2533 -0.0621 4.3072 44 1 2.4315 1.0987 2.2971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833029863.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:57 Heat of formation + Delta-G solvation = -38.942205 kcal Electronic energy + Delta-G solvation = -25131.242073 eV Core-core repulsion = 21244.063208 eV Total energy + Delta-G solvation = -3887.178865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.63725 -40.81374 -39.60164 -37.00712 -36.31423 -35.05072 -32.91612 -32.50389 -32.06906 -30.80072 -29.78394 -27.06653 -26.08232 -24.10373 -23.89053 -22.43930 -21.34802 -20.49004 -20.08920 -19.89046 -19.07296 -17.96830 -17.69441 -16.97120 -16.59214 -16.05277 -15.88826 -15.55928 -15.16583 -14.70702 -14.50743 -14.27116 -14.11692 -13.95112 -13.54185 -13.19140 -12.69737 -12.61562 -12.39888 -12.29707 -12.10453 -12.00482 -11.80847 -11.77169 -11.59674 -11.57182 -11.17450 -10.80482 -10.60344 -10.23239 -10.09721 -10.05912 -9.87677 -9.70316 -9.53991 -9.48995 -9.16078 -8.52731 -6.03820 -4.01567 -0.74078 0.25716 0.77152 0.90538 2.45042 2.53155 2.81818 3.32137 3.39384 3.44616 3.63346 3.68595 3.82654 4.19111 4.22557 4.46664 4.49382 4.62996 4.63194 4.75775 4.94395 4.99340 5.06478 5.11107 5.16435 5.18649 5.26251 5.30870 5.48299 5.57712 5.66751 5.69213 5.92389 5.94719 6.00577 6.07278 6.33595 6.61132 6.74895 6.93217 7.10948 7.16786 7.33104 7.45944 7.81068 7.98216 8.54608 9.00948 9.59351 11.09615 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027163 B = 0.001770 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.565432 B =15813.546249 C =16307.877951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.175 3.825 3 H 0.106 0.894 4 N -0.737 5.737 5 C 0.517 3.483 6 O -0.531 6.531 7 C -0.139 4.139 8 C -0.106 4.106 9 C -0.103 4.103 10 C -0.015 4.015 11 C -0.520 4.520 12 H 0.071 0.929 13 C 0.065 3.935 14 N -0.905 5.905 15 Si 0.880 3.120 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.265 1.265 19 C -0.035 4.035 20 C -0.114 4.114 21 C -0.048 4.048 22 C -0.047 4.047 23 N 0.028 4.972 24 O -0.159 6.159 25 O -0.160 6.160 26 C -0.049 4.049 27 C -0.106 4.106 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.400 0.600 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.015 0.985 39 H 0.011 0.989 40 H 0.262 0.738 41 H 0.148 0.852 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.028 -3.525 31.044 32.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.071 3.929 3 H 0.124 0.876 4 N -0.391 5.391 5 C 0.304 3.696 6 O -0.406 6.406 7 C -0.179 4.179 8 C -0.144 4.144 9 C -0.141 4.141 10 C -0.053 4.053 11 C -0.558 4.558 12 H 0.089 0.911 13 C -0.136 4.136 14 N -0.544 5.544 15 Si 0.707 3.293 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.189 1.189 19 C -0.036 4.036 20 C -0.133 4.133 21 C -0.067 4.067 22 C -0.130 4.130 23 N 0.547 4.453 24 O -0.375 6.375 25 O -0.376 6.376 26 C -0.068 4.068 27 C -0.125 4.125 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.235 0.765 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.166 0.834 42 H 0.174 0.826 43 H 0.174 0.826 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.434 -2.290 30.211 31.197 hybrid contribution 0.100 0.188 0.233 0.315 sum -7.335 -2.102 30.444 31.386 Atomic orbital electron populations 1.22197 0.93208 1.02916 1.03553 1.19879 0.94878 0.97186 0.81003 0.87628 1.46266 1.69271 1.14161 1.09431 1.21143 0.76561 0.87471 0.84375 1.90713 1.48967 1.16123 1.84825 1.21798 1.02796 1.00509 0.92799 1.21492 1.02462 0.97332 0.93144 1.21482 0.99967 0.98909 0.93698 1.19574 0.96575 0.95179 0.93948 1.21176 1.43582 0.98318 0.92768 0.91112 1.25050 0.94649 0.98257 0.95667 1.69921 1.47057 1.36673 1.00785 0.86771 0.79431 0.85831 0.77240 1.20316 1.21429 1.18936 1.20527 0.93407 0.94069 0.95633 1.21018 1.00348 0.93833 0.98068 1.21072 0.93215 1.02089 0.90317 1.21179 1.10773 0.93206 0.87869 1.43630 0.98268 1.01198 1.02158 1.94555 1.58850 0.95597 1.88478 1.94554 1.49503 1.67173 1.26343 1.21094 0.94693 0.91367 0.99651 1.21116 0.98484 1.01405 0.91533 0.91942 0.91250 0.90660 0.76469 0.88853 0.88808 0.91738 0.91762 0.92848 0.92802 0.96624 0.97064 0.92792 0.83450 0.82595 0.82613 0.83072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 9.46 37.15 0.35 -0.57 16 2 C 0.18 1.06 2.78 -69.08 -0.19 0.87 16 3 H 0.11 0.78 7.44 -51.93 -0.39 0.39 16 4 N -0.74 -5.09 5.03 -54.93 -0.28 -5.36 16 5 C 0.52 5.66 7.79 -10.98 -0.09 5.57 16 6 O -0.53 -7.97 15.64 5.56 0.09 -7.88 16 7 C -0.14 -1.51 5.70 -27.89 -0.16 -1.67 16 8 C -0.11 -1.65 4.50 -26.73 -0.12 -1.77 16 9 C -0.10 -1.93 5.15 -26.73 -0.14 -2.07 16 10 C -0.02 -0.37 4.04 -27.89 -0.11 -0.48 16 11 C -0.52 -14.90 9.66 -34.44 -0.33 -15.23 16 12 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 13 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 14 N -0.91 -28.05 13.96 55.43 0.77 -27.28 16 15 Si 0.88 22.02 27.47 -169.99 -4.67 17.36 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 19 C -0.04 -0.17 4.96 -104.62 -0.52 -0.68 16 20 C -0.11 -0.45 9.06 -39.58 -0.36 -0.81 16 21 C -0.05 -0.25 9.56 -39.58 -0.38 -0.63 16 22 C -0.05 -0.33 6.85 -79.95 -0.55 -0.88 16 23 N 0.03 0.27 4.45 33.96 0.15 0.42 16 24 O -0.16 -1.67 18.45 -29.46 -0.54 -2.21 16 25 O -0.16 -1.68 18.45 -29.46 -0.54 -2.23 16 26 C -0.05 -0.26 9.56 -39.58 -0.38 -0.64 16 27 C -0.11 -0.46 9.67 -39.58 -0.38 -0.84 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.40 1.70 6.86 -40.82 -0.28 1.42 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 35 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 39 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.15 0.27 6.90 -52.49 -0.36 -0.10 16 42 H 0.16 0.64 7.61 -52.49 -0.40 0.24 16 43 H 0.16 0.66 7.61 -52.48 -0.40 0.26 16 44 H 0.15 0.37 8.04 -52.49 -0.42 -0.05 16 LS Contribution 377.13 15.07 5.68 5.68 Total: -1.00 -35.28 377.13 -9.19 -44.46 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -6.40 Total: -4.93 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -3.45 Total: -18.03 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.65 Total: -32.22 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -1.00 Total: -12.32 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.28 -9.19 -44.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833029863.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.523 kcal (2) G-P(sol) polarization free energy of solvation -35.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds