Wall clock time and date at job start Tue Mar 31 2020 13:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47185 * 2 1 4 4 C 1.50701 * 109.47373 * 240.00408 * 2 1 3 5 5 H 1.08000 * 119.99816 * 239.99934 * 4 2 1 6 6 C 1.37877 * 120.00045 * 59.99659 * 4 2 1 7 7 N 1.31511 * 120.00107 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99868 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47377 * 89.99840 * 8 6 4 10 10 H 1.48497 * 109.47239 * 209.99913 * 8 6 4 11 11 H 1.48504 * 109.47498 * 329.99930 * 8 6 4 12 12 O 1.45192 * 109.47592 * 119.99877 * 2 1 3 13 13 C 1.34743 * 117.00416 * 270.00721 * 12 2 1 14 14 O 1.21507 * 119.99753 * 359.97438 * 13 12 2 15 15 C 1.47470 * 120.00395 * 179.97438 * 13 12 2 16 16 C 1.40332 * 120.49240 * 179.97438 * 15 13 12 17 17 C 1.36928 * 118.47930 * 179.70220 * 16 15 13 18 18 C 1.39272 * 119.38798 * 0.27608 * 17 16 15 19 19 N 1.38950 * 119.52445 * 180.02562 * 18 17 16 20 20 C 1.34783 * 120.00127 * 174.90601 * 19 18 17 21 21 O 1.21272 * 119.99599 * 5.08576 * 20 19 18 22 22 C 1.50698 * 120.00180 * 185.09092 * 20 19 18 23 23 C 1.53000 * 109.46955 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.46677 * 299.99924 * 22 20 19 25 25 C 1.53001 * 109.47048 * 59.99525 * 22 20 19 26 26 N 1.32533 * 120.95160 * 0.02562 * 18 17 16 27 27 C 1.31656 * 121.65770 * 359.97438 * 26 18 17 28 28 H 1.09004 * 109.47061 * 60.00081 * 1 2 3 29 29 H 1.08999 * 109.46874 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47172 * 300.00034 * 1 2 3 31 31 H 0.97005 * 119.99973 * 180.02562 * 7 6 4 32 32 H 1.08003 * 120.76101 * 359.97020 * 16 15 13 33 33 H 1.08000 * 120.30324 * 180.25126 * 17 16 15 34 34 H 0.97002 * 119.99893 * 354.90496 * 19 18 17 35 35 H 1.08990 * 109.47501 * 59.99949 * 23 22 20 36 36 H 1.09000 * 109.46764 * 180.02562 * 23 22 20 37 37 H 1.08997 * 109.46560 * 299.99167 * 23 22 20 38 38 H 1.08999 * 109.47398 * 60.00220 * 24 22 20 39 39 H 1.09000 * 109.47017 * 179.97438 * 24 22 20 40 40 H 1.08998 * 109.47583 * 299.99798 * 24 22 20 41 41 H 1.08997 * 109.46738 * 60.00373 * 25 22 20 42 42 H 1.09005 * 109.46661 * 179.97438 * 25 22 20 43 43 H 1.08999 * 109.47527 * 300.00086 * 25 22 20 44 44 H 1.08004 * 119.74911 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3429 -2.1616 -4.4120 10 1 2.4866 -0.1412 -5.1123 11 1 3.6295 -1.7581 -3.7123 12 8 2.0141 -0.6844 1.1855 13 6 2.2179 0.0669 2.2853 14 8 1.9976 1.2614 2.2544 15 6 2.7084 -0.5606 3.5264 16 6 2.9247 0.2122 4.6777 17 6 3.3747 -0.4138 5.8092 18 6 3.6084 -1.7866 5.7839 19 7 4.0646 -2.4248 6.9307 20 6 4.1959 -3.7661 6.9485 21 8 4.0050 -4.4075 5.9371 22 6 4.5800 -4.4688 8.2251 23 6 4.6607 -5.9758 7.9734 24 6 5.9422 -3.9576 8.6985 25 6 3.5278 -4.1861 9.2993 26 7 3.4019 -2.4929 4.6816 27 6 2.9698 -1.9314 3.5719 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.7089 1.1615 -3.4844 32 1 2.7364 1.2757 4.6725 33 1 3.5473 0.1518 6.7130 34 1 4.2885 -1.9051 7.7185 35 1 5.4105 -6.1768 7.2083 36 1 4.9380 -6.4840 8.8969 37 1 3.6904 -6.3401 7.6359 38 1 5.8852 -2.8840 8.8777 39 1 6.2198 -4.4655 9.6221 40 1 6.6919 -4.1589 7.9333 41 1 2.5574 -4.5502 8.9619 42 1 3.8054 -4.6947 10.2225 43 1 3.4708 -3.1124 9.4785 44 1 2.8117 -2.5366 2.6914 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835161499.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:05 Heat of formation + Delta-G solvation = -87.411169 kcal Electronic energy + Delta-G solvation = -26314.963351 eV Core-core repulsion = 22425.682715 eV Total energy + Delta-G solvation = -3889.280637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.22771 -39.94325 -38.89867 -36.05137 -35.72551 -35.16461 -33.24831 -32.54571 -30.68981 -29.35012 -27.86921 -27.58233 -25.39094 -25.19103 -23.98584 -22.91433 -21.52672 -19.94800 -19.72650 -18.33104 -17.53044 -17.10810 -16.58349 -15.98959 -15.77080 -15.41702 -15.07201 -14.99569 -14.54020 -14.42773 -14.34071 -14.26272 -13.47825 -13.42093 -13.01734 -12.84829 -12.70444 -12.61249 -12.31130 -12.20918 -12.17467 -11.89371 -11.43785 -11.42066 -11.24723 -11.07300 -10.87812 -10.79464 -10.37668 -10.30105 -10.24699 -9.98648 -9.87529 -9.54486 -9.09908 -8.89794 -8.49455 -8.42826 -6.16807 -4.23470 0.63271 1.24229 2.34640 2.50458 3.14760 3.27244 3.32308 3.36026 3.60286 3.95432 3.99405 4.22968 4.35242 4.38925 4.46261 4.71371 4.73659 4.92355 4.95524 5.02378 5.14393 5.16407 5.20564 5.33429 5.44039 5.44851 5.47532 5.50411 5.60472 5.73024 5.88259 5.90469 6.00837 6.23468 6.56553 6.65502 6.85560 6.91023 6.92302 7.14965 7.60490 7.73210 7.75033 7.93010 8.05859 8.14856 8.61152 8.88469 9.41834 10.90683 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022164 B = 0.002480 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.021403 B =11285.667777 C =12109.090268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H 0.048 0.952 4 C -0.520 4.520 5 H 0.070 0.930 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.350 6.350 13 C 0.504 3.496 14 O -0.519 6.519 15 C -0.198 4.198 16 C 0.010 3.990 17 C -0.221 4.221 18 C 0.378 3.622 19 N -0.659 5.659 20 C 0.509 3.491 21 O -0.459 6.459 22 C -0.084 4.084 23 C -0.130 4.130 24 C -0.143 4.143 25 C -0.142 4.142 26 N -0.485 5.485 27 C 0.193 3.807 28 H 0.100 0.900 29 H 0.038 0.962 30 H 0.016 0.984 31 H 0.266 0.734 32 H 0.151 0.849 33 H 0.141 0.859 34 H 0.416 0.584 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.447 -7.161 26.440 28.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.558 4.558 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.266 6.266 13 C 0.348 3.652 14 O -0.411 6.411 15 C -0.202 4.202 16 C -0.016 4.016 17 C -0.244 4.244 18 C 0.146 3.854 19 N -0.306 5.306 20 C 0.294 3.706 21 O -0.325 6.325 22 C -0.088 4.088 23 C -0.187 4.187 24 C -0.200 4.200 25 C -0.200 4.200 26 N -0.200 5.200 27 C 0.034 3.966 28 H 0.118 0.882 29 H 0.057 0.943 30 H 0.035 0.965 31 H 0.076 0.924 32 H 0.169 0.831 33 H 0.159 0.841 34 H 0.253 0.747 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 7.324 -8.177 25.568 27.825 hybrid contribution 0.117 1.051 -0.455 1.152 sum 7.441 -7.126 25.113 27.144 Atomic orbital electron populations 1.22170 0.97472 1.00222 1.01437 1.20677 0.91428 0.93963 0.77501 0.93443 1.21030 1.32489 1.13500 0.88804 0.91187 1.24885 0.94949 0.95088 0.99076 1.69900 1.36130 1.22537 1.24172 0.86263 0.79350 0.79114 0.81358 1.20339 1.21009 1.19582 1.86537 1.75791 1.43196 1.21098 1.20640 0.74944 0.85180 0.84413 1.90770 1.49275 1.16177 1.84832 1.20391 1.09675 0.95878 0.94285 1.21219 0.89638 1.00931 0.89820 1.21089 1.09274 0.93249 1.00767 1.18736 0.91116 0.88500 0.87043 1.43617 1.64916 1.08336 1.13709 1.20927 0.77394 0.81429 0.90876 1.90852 1.43366 1.64304 1.34014 1.20871 0.97512 0.97589 0.92810 1.21689 1.03524 0.91606 1.01900 1.21904 0.94785 1.01140 1.02220 1.21892 0.98204 1.02078 0.97790 1.67852 1.15964 1.37968 0.98196 1.23294 0.87054 0.91314 0.94894 0.88188 0.94332 0.96486 0.92408 0.83142 0.84137 0.74705 0.91642 0.91766 0.91655 0.92206 0.90973 0.91719 0.91779 0.91009 0.92140 0.80381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 9.33 37.16 0.35 -3.64 16 2 C 0.22 5.87 2.56 -27.88 -0.07 5.80 16 3 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 4 C -0.52 -14.72 8.90 -34.44 -0.31 -15.03 16 5 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.42 11.32 55.43 0.63 -24.80 16 8 Si 0.91 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 12 O -0.35 -8.43 9.13 -40.61 -0.37 -8.80 16 13 C 0.50 10.89 7.87 34.49 0.27 11.16 16 14 O -0.52 -12.33 15.67 -19.27 -0.30 -12.63 16 15 C -0.20 -3.37 5.89 -104.83 -0.62 -3.99 16 16 C 0.01 0.13 9.65 -39.27 -0.38 -0.25 16 17 C -0.22 -2.36 9.86 -39.67 -0.39 -2.76 16 18 C 0.38 4.78 7.41 -154.91 -1.15 3.63 16 19 N -0.66 -6.07 5.15 -11.44 -0.06 -6.13 16 20 C 0.51 5.49 6.44 -10.98 -0.07 5.42 16 21 O -0.46 -7.17 14.22 5.56 0.08 -7.09 16 22 C -0.08 -0.57 0.87 -155.66 -0.14 -0.70 16 23 C -0.13 -0.95 7.76 37.16 0.29 -0.66 16 24 C -0.14 -0.67 8.37 37.16 0.31 -0.35 16 25 C -0.14 -0.68 8.38 37.16 0.31 -0.37 16 26 N -0.49 -7.82 7.85 -12.05 -0.09 -7.92 16 27 C 0.19 3.20 10.79 -17.11 -0.18 3.02 16 28 H 0.10 2.73 6.07 -51.93 -0.32 2.41 16 29 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.15 1.88 7.73 -52.48 -0.41 1.48 16 33 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 34 H 0.42 2.07 7.55 -40.82 -0.31 1.76 16 35 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 38 H 0.06 0.19 7.46 -51.93 -0.39 -0.20 16 39 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.06 0.21 7.69 -51.93 -0.40 -0.19 16 44 H 0.18 2.95 7.62 -52.48 -0.40 2.55 16 LS Contribution 372.23 15.07 5.61 5.61 Total: -1.00 -34.88 372.23 -7.76 -42.64 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.36 Total: -0.09 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -1.87 Total: 2.90 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.47 Total: -38.85 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.59 Total: -28.53 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.88 -7.76 -42.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835161499.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.775 kcal (2) G-P(sol) polarization free energy of solvation -34.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds