Wall clock time and date at job start Tue Mar 31 2020 13:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47185 * 2 1 4 4 C 1.50701 * 109.47373 * 240.00408 * 2 1 3 5 5 H 1.08000 * 119.99816 * 239.99934 * 4 2 1 6 6 C 1.37877 * 120.00045 * 59.99659 * 4 2 1 7 7 N 1.31511 * 120.00107 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99868 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47377 * 89.99840 * 8 6 4 10 10 H 1.48497 * 109.47239 * 209.99913 * 8 6 4 11 11 H 1.48504 * 109.47498 * 329.99930 * 8 6 4 12 12 O 1.45192 * 109.47592 * 119.99877 * 2 1 3 13 13 C 1.34743 * 117.00416 * 270.00721 * 12 2 1 14 14 O 1.21507 * 119.99753 * 359.97438 * 13 12 2 15 15 C 1.47470 * 120.00395 * 179.97438 * 13 12 2 16 16 C 1.40332 * 120.49240 * 179.97438 * 15 13 12 17 17 C 1.36928 * 118.47930 * 179.70220 * 16 15 13 18 18 C 1.39272 * 119.38798 * 0.27608 * 17 16 15 19 19 N 1.38950 * 119.52445 * 180.02562 * 18 17 16 20 20 C 1.34783 * 120.00127 * 174.90601 * 19 18 17 21 21 O 1.21272 * 119.99599 * 5.08576 * 20 19 18 22 22 C 1.50698 * 120.00180 * 185.09092 * 20 19 18 23 23 C 1.53000 * 109.46955 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.46677 * 299.99924 * 22 20 19 25 25 C 1.53001 * 109.47048 * 59.99525 * 22 20 19 26 26 N 1.32533 * 120.95160 * 0.02562 * 18 17 16 27 27 C 1.31656 * 121.65770 * 359.97438 * 26 18 17 28 28 H 1.09004 * 109.47061 * 60.00081 * 1 2 3 29 29 H 1.08999 * 109.46874 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47172 * 300.00034 * 1 2 3 31 31 H 0.97005 * 119.99973 * 180.02562 * 7 6 4 32 32 H 1.08003 * 120.76101 * 359.97020 * 16 15 13 33 33 H 1.08000 * 120.30324 * 180.25126 * 17 16 15 34 34 H 0.97002 * 119.99893 * 354.90496 * 19 18 17 35 35 H 1.08990 * 109.47501 * 59.99949 * 23 22 20 36 36 H 1.09000 * 109.46764 * 180.02562 * 23 22 20 37 37 H 1.08997 * 109.46560 * 299.99167 * 23 22 20 38 38 H 1.08999 * 109.47398 * 60.00220 * 24 22 20 39 39 H 1.09000 * 109.47017 * 179.97438 * 24 22 20 40 40 H 1.08998 * 109.47583 * 299.99798 * 24 22 20 41 41 H 1.08997 * 109.46738 * 60.00373 * 25 22 20 42 42 H 1.09005 * 109.46661 * 179.97438 * 25 22 20 43 43 H 1.08999 * 109.47527 * 300.00086 * 25 22 20 44 44 H 1.08004 * 119.74911 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3429 -2.1616 -4.4120 10 1 2.4866 -0.1412 -5.1123 11 1 3.6295 -1.7581 -3.7123 12 8 2.0141 -0.6844 1.1855 13 6 2.2179 0.0669 2.2853 14 8 1.9976 1.2614 2.2544 15 6 2.7084 -0.5606 3.5264 16 6 2.9247 0.2122 4.6777 17 6 3.3747 -0.4138 5.8092 18 6 3.6084 -1.7866 5.7839 19 7 4.0646 -2.4248 6.9307 20 6 4.1959 -3.7661 6.9485 21 8 4.0050 -4.4075 5.9371 22 6 4.5800 -4.4688 8.2251 23 6 4.6607 -5.9758 7.9734 24 6 5.9422 -3.9576 8.6985 25 6 3.5278 -4.1861 9.2993 26 7 3.4019 -2.4929 4.6816 27 6 2.9698 -1.9314 3.5719 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.7089 1.1615 -3.4844 32 1 2.7364 1.2757 4.6725 33 1 3.5473 0.1518 6.7130 34 1 4.2885 -1.9051 7.7185 35 1 5.4105 -6.1768 7.2083 36 1 4.9380 -6.4840 8.8969 37 1 3.6904 -6.3401 7.6359 38 1 5.8852 -2.8840 8.8777 39 1 6.2198 -4.4655 9.6221 40 1 6.6919 -4.1589 7.9333 41 1 2.5574 -4.5502 8.9619 42 1 3.8054 -4.6947 10.2225 43 1 3.4708 -3.1124 9.4785 44 1 2.8117 -2.5366 2.6914 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835161499.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:04 Heat of formation + Delta-G solvation = -108.965577 kcal Electronic energy + Delta-G solvation = -26315.898021 eV Core-core repulsion = 22425.682715 eV Total energy + Delta-G solvation = -3890.215306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.24058 -41.31899 -40.27152 -37.62210 -36.66912 -36.20698 -35.33787 -33.69066 -32.15593 -31.13910 -28.20762 -28.12704 -27.47530 -26.39249 -25.15553 -24.11275 -23.00908 -21.66893 -20.60627 -19.33667 -19.12187 -18.60771 -17.83788 -17.64044 -16.91509 -16.82633 -16.53694 -16.35108 -15.89265 -15.41030 -15.21031 -15.05559 -14.77710 -14.37992 -14.31451 -14.15434 -14.01033 -13.81998 -13.30814 -13.23362 -13.04702 -13.01586 -12.91586 -12.81354 -12.61972 -12.41922 -12.17810 -12.00021 -11.89638 -11.87821 -11.67261 -11.60590 -11.16897 -11.08799 -11.01588 -10.61170 -10.20086 -9.52822 -8.29953 -6.46474 -0.58814 0.16395 1.32471 1.41046 1.43315 1.54182 1.66889 1.75964 1.93610 2.40237 2.75849 3.00682 3.12225 3.53059 3.68794 3.77484 3.80994 3.89216 3.91497 4.02998 4.23460 4.49412 4.51657 4.70694 4.73994 4.74499 4.77405 4.81399 4.83277 4.94793 4.95804 4.96126 5.01575 5.03984 5.16927 5.24813 5.34305 5.35909 5.46788 5.55284 5.60536 5.87442 6.02025 6.06425 6.57252 6.74916 6.89610 7.18190 7.24705 8.77931 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022164 B = 0.002480 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.021403 B =11285.667777 C =12109.090268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.219 3.781 3 H 0.011 0.989 4 C -0.549 4.549 5 H 0.066 0.934 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.983 3.017 9 H -0.267 1.267 10 H -0.276 1.276 11 H -0.267 1.267 12 O -0.358 6.358 13 C 0.502 3.498 14 O -0.548 6.548 15 C -0.219 4.219 16 C 0.011 3.989 17 C -0.189 4.189 18 C 0.377 3.623 19 N -0.640 5.640 20 C 0.503 3.497 21 O -0.515 6.515 22 C -0.076 4.076 23 C -0.131 4.131 24 C -0.141 4.141 25 C -0.140 4.140 26 N -0.516 5.516 27 C 0.188 3.812 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.024 0.976 31 H 0.272 0.728 32 H 0.164 0.836 33 H 0.199 0.801 34 H 0.440 0.560 35 H 0.045 0.955 36 H 0.091 0.909 37 H 0.044 0.956 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.047 0.953 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.646 -7.199 29.606 31.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.166 3.834 3 H 0.029 0.971 4 C -0.586 4.586 5 H 0.084 0.916 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.806 3.194 9 H -0.192 1.192 10 H -0.201 1.201 11 H -0.192 1.192 12 O -0.275 6.275 13 C 0.348 3.652 14 O -0.441 6.441 15 C -0.224 4.224 16 C -0.014 4.014 17 C -0.211 4.211 18 C 0.144 3.856 19 N -0.288 5.288 20 C 0.291 3.709 21 O -0.385 6.385 22 C -0.079 4.079 23 C -0.189 4.189 24 C -0.199 4.199 25 C -0.198 4.198 26 N -0.231 5.231 27 C 0.030 3.970 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.181 0.819 33 H 0.216 0.784 34 H 0.282 0.718 35 H 0.064 0.936 36 H 0.110 0.890 37 H 0.063 0.937 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.536 -8.197 28.808 31.144 hybrid contribution -0.204 1.037 -1.242 1.631 sum 8.332 -7.160 27.566 29.674 Atomic orbital electron populations 1.21992 0.96631 1.00424 1.00962 1.20395 0.92094 0.92189 0.78769 0.97093 1.21285 1.33488 1.13925 0.89943 0.91565 1.25815 0.94726 0.95672 1.02063 1.70010 1.36523 1.23527 1.25267 0.85182 0.78954 0.78138 0.77134 1.19202 1.20057 1.19162 1.86529 1.76260 1.43339 1.21324 1.21416 0.74019 0.84963 0.84791 1.90736 1.50815 1.17274 1.85256 1.20174 1.12539 0.96320 0.93405 1.21450 0.89274 1.01393 0.89298 1.21528 1.05857 0.92258 1.01482 1.19181 0.89949 0.89541 0.86954 1.43613 1.63595 1.08227 1.13414 1.21860 0.75804 0.81616 0.91621 1.90841 1.45810 1.65517 1.36366 1.20918 0.99547 0.96363 0.91118 1.21717 1.01818 0.92766 1.02583 1.21942 0.92578 1.02778 1.02557 1.21929 0.96482 1.03751 0.97599 1.67832 1.17063 1.39126 0.99086 1.23019 0.87815 0.91032 0.95150 0.89829 0.93649 0.95647 0.91910 0.81867 0.78417 0.71839 0.93568 0.88993 0.93673 0.90019 0.88787 0.93240 0.93427 0.88795 0.90046 0.81926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.58 9.33 71.98 0.67 -6.90 16 2 C 0.22 12.44 2.56 29.85 0.08 12.51 16 3 H 0.01 0.71 7.16 -2.39 -0.02 0.69 16 4 C -0.55 -32.13 8.90 25.60 0.23 -31.90 16 5 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 6 C 0.02 0.96 5.30 84.66 0.45 1.41 16 7 N -0.92 -53.38 11.32 21.45 0.24 -53.14 16 8 Si 0.98 44.03 29.54 68.60 2.03 46.05 16 9 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 10 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 O -0.36 -18.22 9.13 -56.53 -0.52 -18.73 16 13 C 0.50 22.66 7.87 70.26 0.55 23.21 16 14 O -0.55 -27.08 15.67 19.81 0.31 -26.77 16 15 C -0.22 -7.63 5.89 -20.00 -0.12 -7.75 16 16 C 0.01 0.28 9.65 22.47 0.22 0.50 16 17 C -0.19 -3.33 9.86 22.21 0.22 -3.11 16 18 C 0.38 8.69 7.41 133.07 0.99 9.67 16 19 N -0.64 -9.85 5.15 -308.50 -1.59 -11.44 16 20 C 0.50 10.18 6.44 87.66 0.56 10.74 16 21 O -0.51 -16.46 14.22 -3.00 -0.04 -16.50 16 22 C -0.08 -0.84 0.87 -52.93 -0.05 -0.89 16 23 C -0.13 -1.81 7.76 71.98 0.56 -1.25 16 24 C -0.14 -0.81 8.37 71.98 0.60 -0.20 16 25 C -0.14 -0.85 8.38 71.98 0.60 -0.25 16 26 N -0.52 -16.74 7.85 -192.04 -1.51 -18.25 16 27 C 0.19 6.52 10.79 85.06 0.92 7.44 16 28 H 0.08 4.72 6.07 -2.38 -0.01 4.70 16 29 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.27 14.74 8.31 -92.70 -0.77 13.97 16 32 H 0.16 3.74 7.73 -2.91 -0.02 3.72 16 33 H 0.20 1.23 8.06 -2.91 -0.02 1.21 16 34 H 0.44 2.19 7.55 -92.71 -0.70 1.49 16 35 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 36 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.04 0.79 8.10 -2.39 -0.02 0.77 16 38 H 0.08 0.12 7.46 -2.39 -0.02 0.10 16 39 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 40 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.09 0.21 8.14 -2.38 -0.02 0.19 16 43 H 0.08 0.16 7.69 -2.39 -0.02 0.14 16 44 H 0.16 5.90 7.62 -2.91 -0.02 5.88 16 Total: -1.00 -81.50 372.23 5.72 -75.77 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 0.32 Total: 9.76 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 6.48 Total: 13.24 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -2.85 Total: -82.82 kcal Atomic # 8 Polarization: -61.75 SS G_CDS: -0.25 Total: -62.00 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -81.50 5.72 -75.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835161499.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.194 kcal (2) G-P(sol) polarization free energy of solvation -81.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds